Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20750

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20745 and CA264_20750 are separated by 1 nucleotidesCA264_20750 and CA264_20755 are separated by 103 nucleotides CA264_20745: CA264_20745 - metal transporter, at 7,936 to 9,882 _20745 CA264_20750: CA264_20750 - metal transporter, at 9,884 to 11,164 _20750 CA264_20755: CA264_20755 - hypothetical protein, at 11,268 to 12,029 _20755 Position (kb) 9 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 8.949 kb on - strand, within CA264_20745at 8.995 kb on + strand, within CA264_20745at 8.996 kb on - strand, within CA264_20745at 8.996 kb on - strand, within CA264_20745at 8.996 kb on - strand, within CA264_20745at 8.996 kb on - strand, within CA264_20745at 9.004 kb on + strand, within CA264_20745at 9.004 kb on + strand, within CA264_20745at 9.005 kb on - strand, within CA264_20745at 9.030 kb on + strand, within CA264_20745at 9.031 kb on - strand, within CA264_20745at 9.035 kb on + strand, within CA264_20745at 9.035 kb on + strand, within CA264_20745at 9.035 kb on + strand, within CA264_20745at 9.035 kb on + strand, within CA264_20745at 9.036 kb on - strand, within CA264_20745at 9.037 kb on + strand, within CA264_20745at 9.037 kb on + strand, within CA264_20745at 9.037 kb on + strand, within CA264_20745at 9.038 kb on - strand, within CA264_20745at 9.038 kb on - strand, within CA264_20745at 9.038 kb on - strand, within CA264_20745at 9.039 kb on + strand, within CA264_20745at 9.039 kb on + strand, within CA264_20745at 9.040 kb on - strand, within CA264_20745at 9.040 kb on - strand, within CA264_20745at 9.040 kb on - strand, within CA264_20745at 9.062 kb on - strand, within CA264_20745at 9.093 kb on + strand, within CA264_20745at 9.136 kb on + strand, within CA264_20745at 9.136 kb on + strand, within CA264_20745at 9.235 kb on - strand, within CA264_20745at 9.279 kb on - strand, within CA264_20745at 9.311 kb on - strand, within CA264_20745at 9.311 kb on - strand, within CA264_20745at 9.451 kb on + strand, within CA264_20745at 9.452 kb on - strand, within CA264_20745at 9.634 kb on - strand, within CA264_20745at 9.643 kb on + strand, within CA264_20745at 9.644 kb on - strand, within CA264_20745at 9.644 kb on - strand, within CA264_20745at 9.644 kb on - strand, within CA264_20745at 9.675 kb on + strand, within CA264_20745at 9.676 kb on - strand, within CA264_20745at 9.725 kb on - strandat 9.741 kb on + strandat 9.779 kb on - strandat 9.801 kb on + strandat 9.805 kb on - strandat 9.882 kb on + strandat 9.883 kb on - strandat 9.905 kb on + strandat 10.040 kb on - strand, within CA264_20750at 10.070 kb on + strand, within CA264_20750at 10.070 kb on + strand, within CA264_20750at 10.071 kb on - strand, within CA264_20750at 10.071 kb on - strand, within CA264_20750at 10.127 kb on + strand, within CA264_20750at 10.127 kb on + strand, within CA264_20750at 10.200 kb on + strand, within CA264_20750at 10.217 kb on + strand, within CA264_20750at 10.241 kb on + strand, within CA264_20750at 10.283 kb on - strand, within CA264_20750at 10.351 kb on + strand, within CA264_20750at 10.417 kb on + strand, within CA264_20750at 10.419 kb on + strand, within CA264_20750at 10.419 kb on + strand, within CA264_20750at 10.419 kb on + strand, within CA264_20750at 10.419 kb on + strand, within CA264_20750at 10.443 kb on - strand, within CA264_20750at 10.443 kb on - strand, within CA264_20750at 10.443 kb on - strand, within CA264_20750at 10.444 kb on + strand, within CA264_20750at 10.485 kb on + strand, within CA264_20750at 10.486 kb on - strand, within CA264_20750at 10.575 kb on + strand, within CA264_20750at 10.575 kb on + strand, within CA264_20750at 10.575 kb on + strand, within CA264_20750at 10.575 kb on + strand, within CA264_20750at 10.576 kb on - strand, within CA264_20750at 10.576 kb on - strand, within CA264_20750at 10.578 kb on + strand, within CA264_20750at 10.612 kb on - strand, within CA264_20750at 10.720 kb on - strand, within CA264_20750at 10.741 kb on - strand, within CA264_20750at 10.779 kb on - strand, within CA264_20750at 10.818 kb on + strand, within CA264_20750at 10.854 kb on + strand, within CA264_20750at 10.854 kb on + strand, within CA264_20750at 10.906 kb on + strand, within CA264_20750at 10.966 kb on - strand, within CA264_20750at 11.007 kb on + strand, within CA264_20750at 11.007 kb on + strand, within CA264_20750at 11.007 kb on + strand, within CA264_20750at 11.008 kb on - strand, within CA264_20750at 11.057 kb on + strandat 11.079 kb on + strandat 11.102 kb on + strandat 11.102 kb on + strandat 11.103 kb on - strandat 11.103 kb on - strandat 11.103 kb on - strandat 11.104 kb on + strandat 11.104 kb on + strandat 11.105 kb on - strandat 11.105 kb on - strandat 11.164 kb on + strandat 11.165 kb on - strandat 11.180 kb on + strandat 11.181 kb on - strandat 11.182 kb on + strandat 11.182 kb on + strandat 11.279 kb on + strandat 11.280 kb on - strandat 11.332 kb on - strandat 11.332 kb on - strandat 11.333 kb on + strandat 11.333 kb on + strandat 11.334 kb on - strandat 11.385 kb on - strand, within CA264_20755at 11.385 kb on - strand, within CA264_20755at 11.388 kb on + strand, within CA264_20755at 11.394 kb on + strand, within CA264_20755at 11.394 kb on + strand, within CA264_20755at 11.411 kb on + strand, within CA264_20755at 11.418 kb on - strand, within CA264_20755at 11.420 kb on + strand, within CA264_20755at 11.420 kb on + strand, within CA264_20755at 11.421 kb on - strand, within CA264_20755at 11.463 kb on + strand, within CA264_20755at 11.464 kb on - strand, within CA264_20755at 11.464 kb on - strand, within CA264_20755at 11.489 kb on + strand, within CA264_20755at 11.489 kb on + strand, within CA264_20755at 11.489 kb on + strand, within CA264_20755at 11.490 kb on - strand, within CA264_20755at 11.492 kb on - strand, within CA264_20755at 11.533 kb on + strand, within CA264_20755at 11.555 kb on + strand, within CA264_20755at 11.584 kb on - strand, within CA264_20755at 11.607 kb on - strand, within CA264_20755at 11.661 kb on + strand, within CA264_20755at 11.698 kb on - strand, within CA264_20755at 11.699 kb on + strand, within CA264_20755at 11.700 kb on - strand, within CA264_20755at 11.745 kb on - strand, within CA264_20755at 11.751 kb on - strand, within CA264_20755at 11.788 kb on + strand, within CA264_20755at 11.808 kb on - strand, within CA264_20755at 11.917 kb on + strand, within CA264_20755at 11.918 kb on - strand, within CA264_20755at 11.922 kb on + strand, within CA264_20755at 11.928 kb on + strand, within CA264_20755at 11.934 kb on + strand, within CA264_20755at 11.996 kb on + strandat 11.996 kb on + strandat 11.996 kb on + strandat 12.009 kb on + strandat 12.009 kb on + strandat 12.010 kb on - strandat 12.115 kb on + strandat 12.120 kb on - strandat 12.120 kb on - strandat 12.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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8,949 - CA264_20745 0.52 +0.1
8,995 + CA264_20745 0.54 +0.2
8,996 - CA264_20745 0.54 +0.2
8,996 - CA264_20745 0.54 +1.1
8,996 - CA264_20745 0.54 +0.8
8,996 - CA264_20745 0.54 +0.2
9,004 + CA264_20745 0.55 -0.0
9,004 + CA264_20745 0.55 +0.2
9,005 - CA264_20745 0.55 +0.4
9,030 + CA264_20745 0.56 +0.0
9,031 - CA264_20745 0.56 +0.3
9,035 + CA264_20745 0.56 -0.0
9,035 + CA264_20745 0.56 +0.7
9,035 + CA264_20745 0.56 -0.7
9,035 + CA264_20745 0.56 -0.1
9,036 - CA264_20745 0.56 +0.9
9,037 + CA264_20745 0.57 +0.1
9,037 + CA264_20745 0.57 -0.6
9,037 + CA264_20745 0.57 +1.4
9,038 - CA264_20745 0.57 -0.5
9,038 - CA264_20745 0.57 -0.2
9,038 - CA264_20745 0.57 +0.2
9,039 + CA264_20745 0.57 +0.7
9,039 + CA264_20745 0.57 -0.1
9,040 - CA264_20745 0.57 -0.1
9,040 - CA264_20745 0.57 +0.4
9,040 - CA264_20745 0.57 -0.3
9,062 - CA264_20745 0.58 +1.1
9,093 + CA264_20745 0.59 +0.2
9,136 + CA264_20745 0.62 -2.0
9,136 + CA264_20745 0.62 -0.6
9,235 - CA264_20745 0.67 +1.1
9,279 - CA264_20745 0.69 +0.4
9,311 - CA264_20745 0.71 -0.7
9,311 - CA264_20745 0.71 -0.1
9,451 + CA264_20745 0.78 +0.9
9,452 - CA264_20745 0.78 +2.1
9,634 - CA264_20745 0.87 +0.8
9,643 + CA264_20745 0.88 -0.1
9,644 - CA264_20745 0.88 +0.4
9,644 - CA264_20745 0.88 -0.6
9,644 - CA264_20745 0.88 +0.4
9,675 + CA264_20745 0.89 -0.1
9,676 - CA264_20745 0.89 -0.2
9,725 - +0.7
9,741 + +0.0
9,779 - +1.1
9,801 + +0.3
9,805 - +0.4
9,882 + -0.6
9,883 - +0.3
9,905 + -0.4
10,040 - CA264_20750 0.12 +1.1
10,070 + CA264_20750 0.15 +0.2
10,070 + CA264_20750 0.15 +0.2
10,071 - CA264_20750 0.15 -0.4
10,071 - CA264_20750 0.15 -0.3
10,127 + CA264_20750 0.19 -0.2
10,127 + CA264_20750 0.19 -0.6
10,200 + CA264_20750 0.25 +0.2
10,217 + CA264_20750 0.26 +0.3
10,241 + CA264_20750 0.28 -0.4
10,283 - CA264_20750 0.31 +0.6
10,351 + CA264_20750 0.36 +0.3
10,417 + CA264_20750 0.42 +1.0
10,419 + CA264_20750 0.42 -0.6
10,419 + CA264_20750 0.42 +1.0
10,419 + CA264_20750 0.42 -0.8
10,419 + CA264_20750 0.42 +1.0
10,443 - CA264_20750 0.44 -0.8
10,443 - CA264_20750 0.44 -0.3
10,443 - CA264_20750 0.44 -1.2
10,444 + CA264_20750 0.44 +0.1
10,485 + CA264_20750 0.47 -0.9
10,486 - CA264_20750 0.47 +0.1
10,575 + CA264_20750 0.54 -0.0
10,575 + CA264_20750 0.54 +0.3
10,575 + CA264_20750 0.54 +0.5
10,575 + CA264_20750 0.54 -0.2
10,576 - CA264_20750 0.54 +0.5
10,576 - CA264_20750 0.54 -1.1
10,578 + CA264_20750 0.54 +0.2
10,612 - CA264_20750 0.57 +1.1
10,720 - CA264_20750 0.65 +0.0
10,741 - CA264_20750 0.67 -0.9
10,779 - CA264_20750 0.70 +0.5
10,818 + CA264_20750 0.73 +1.3
10,854 + CA264_20750 0.76 +0.0
10,854 + CA264_20750 0.76 +0.7
10,906 + CA264_20750 0.80 -0.2
10,966 - CA264_20750 0.84 +0.2
11,007 + CA264_20750 0.88 +0.5
11,007 + CA264_20750 0.88 +0.3
11,007 + CA264_20750 0.88 +0.3
11,008 - CA264_20750 0.88 +0.2
11,057 + +0.8
11,079 + +0.5
11,102 + -1.0
11,102 + -0.9
11,103 - +0.2
11,103 - +0.2
11,103 - +0.4
11,104 + +0.1
11,104 + +0.3
11,105 - +1.3
11,105 - +0.2
11,164 + -0.1
11,165 - +0.5
11,180 + -0.3
11,181 - -0.1
11,182 + +0.0
11,182 + -1.2
11,279 + -0.1
11,280 - +0.4
11,332 - +0.0
11,332 - +0.1
11,333 + -1.3
11,333 + +2.7
11,334 - -0.5
11,385 - CA264_20755 0.15 -0.2
11,385 - CA264_20755 0.15 -0.6
11,388 + CA264_20755 0.16 +1.1
11,394 + CA264_20755 0.17 +0.5
11,394 + CA264_20755 0.17 +0.9
11,411 + CA264_20755 0.19 +0.3
11,418 - CA264_20755 0.20 -0.5
11,420 + CA264_20755 0.20 +1.4
11,420 + CA264_20755 0.20 -1.1
11,421 - CA264_20755 0.20 -0.1
11,463 + CA264_20755 0.26 +0.5
11,464 - CA264_20755 0.26 -0.2
11,464 - CA264_20755 0.26 -1.0
11,489 + CA264_20755 0.29 +0.2
11,489 + CA264_20755 0.29 -0.1
11,489 + CA264_20755 0.29 -0.4
11,490 - CA264_20755 0.29 +0.3
11,492 - CA264_20755 0.29 +0.1
11,533 + CA264_20755 0.35 +0.4
11,555 + CA264_20755 0.38 -0.7
11,584 - CA264_20755 0.41 +0.5
11,607 - CA264_20755 0.44 -0.3
11,661 + CA264_20755 0.52 +0.1
11,698 - CA264_20755 0.56 -0.6
11,699 + CA264_20755 0.57 -0.7
11,700 - CA264_20755 0.57 -1.2
11,745 - CA264_20755 0.63 -0.1
11,751 - CA264_20755 0.63 -0.2
11,788 + CA264_20755 0.68 +0.2
11,808 - CA264_20755 0.71 -0.8
11,917 + CA264_20755 0.85 -1.4
11,918 - CA264_20755 0.85 -0.7
11,922 + CA264_20755 0.86 -0.9
11,928 + CA264_20755 0.87 +0.3
11,934 + CA264_20755 0.87 +2.1
11,996 + +0.2
11,996 + -0.6
11,996 + -1.8
12,009 + -0.6
12,009 + +0.2
12,010 - +0.1
12,115 + +1.1
12,120 - -0.5
12,120 - -1.0
12,146 - +0.9

Or see this region's nucleotide sequence