Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20585 and CA264_20590 are separated by 11 nucleotides CA264_20590 and CA264_20595 are separated by 171 nucleotides CA264_20595 and CA264_20600 are separated by 165 nucleotides CA264_20600 and CA264_20605 are separated by 107 nucleotides
CA264_20585: CA264_20585 - 16S rRNA processing protein RimM, at 4,740,065 to 4,740,649
_20585
CA264_20590: CA264_20590 - 30S ribosomal protein S16, at 4,740,661 to 4,741,206
_20590
CA264_20595: CA264_20595 - acyl-CoA desaturase, at 4,741,378 to 4,742,148
_20595
CA264_20600: CA264_20600 - RNA pseudouridine synthase, at 4,742,314 to 4,742,991
_20600
CA264_20605: CA264_20605 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,743,099 to 4,743,917
_20605
Position (kb)
4741
4742
4743 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4741.286 kb on + strand at 4741.286 kb on + strand at 4741.306 kb on + strand at 4741.307 kb on - strand at 4741.307 kb on - strand at 4741.312 kb on - strand at 4741.619 kb on + strand, within CA264_20595 at 4741.626 kb on - strand, within CA264_20595 at 4741.626 kb on - strand, within CA264_20595 at 4741.626 kb on - strand, within CA264_20595 at 4741.661 kb on - strand, within CA264_20595 at 4741.728 kb on - strand, within CA264_20595 at 4741.739 kb on + strand, within CA264_20595 at 4741.769 kb on + strand, within CA264_20595 at 4741.770 kb on - strand, within CA264_20595 at 4741.770 kb on - strand, within CA264_20595 at 4741.770 kb on - strand, within CA264_20595 at 4741.770 kb on - strand, within CA264_20595 at 4741.863 kb on - strand, within CA264_20595 at 4741.902 kb on + strand, within CA264_20595 at 4741.903 kb on - strand, within CA264_20595 at 4742.012 kb on + strand, within CA264_20595 at 4742.012 kb on + strand, within CA264_20595 at 4742.013 kb on - strand, within CA264_20595 at 4742.013 kb on - strand, within CA264_20595 at 4742.024 kb on + strand, within CA264_20595 at 4742.087 kb on + strand at 4742.201 kb on + strand at 4742.201 kb on + strand at 4742.202 kb on - strand at 4742.229 kb on + strand at 4742.229 kb on + strand at 4742.229 kb on + strand at 4742.368 kb on + strand at 4742.369 kb on - strand at 4742.391 kb on + strand, within CA264_20600 at 4742.392 kb on - strand, within CA264_20600 at 4742.392 kb on - strand, within CA264_20600 at 4742.462 kb on + strand, within CA264_20600 at 4742.463 kb on - strand, within CA264_20600 at 4742.493 kb on + strand, within CA264_20600 at 4742.513 kb on - strand, within CA264_20600 at 4742.586 kb on - strand, within CA264_20600 at 4742.707 kb on + strand, within CA264_20600 at 4742.708 kb on - strand, within CA264_20600 at 4742.749 kb on + strand, within CA264_20600 at 4742.861 kb on + strand, within CA264_20600 at 4742.861 kb on + strand, within CA264_20600 at 4742.862 kb on - strand, within CA264_20600 at 4742.876 kb on + strand, within CA264_20600 at 4742.876 kb on + strand, within CA264_20600 at 4742.877 kb on - strand, within CA264_20600 at 4742.999 kb on + strand at 4743.000 kb on - strand at 4743.002 kb on - strand at 4743.004 kb on + strand at 4743.004 kb on + strand at 4743.018 kb on + strand at 4743.070 kb on + strand at 4743.077 kb on + strand at 4743.096 kb on + strand at 4743.100 kb on + strand at 4743.100 kb on + strand at 4743.100 kb on + strand at 4743.101 kb on - strand at 4743.101 kb on - strand at 4743.101 kb on - strand at 4743.104 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 4,741,286 + +0.4 4,741,286 + -2.3 4,741,306 + -0.9 4,741,307 - -0.0 4,741,307 - +1.1 4,741,312 - -0.3 4,741,619 + CA264_20595 0.31 +0.1 4,741,626 - CA264_20595 0.32 -0.8 4,741,626 - CA264_20595 0.32 -0.3 4,741,626 - CA264_20595 0.32 -0.3 4,741,661 - CA264_20595 0.37 +0.5 4,741,728 - CA264_20595 0.45 -0.5 4,741,739 + CA264_20595 0.47 +0.2 4,741,769 + CA264_20595 0.51 -0.5 4,741,770 - CA264_20595 0.51 +0.6 4,741,770 - CA264_20595 0.51 +0.7 4,741,770 - CA264_20595 0.51 -3.0 4,741,770 - CA264_20595 0.51 +0.3 4,741,863 - CA264_20595 0.63 +1.4 4,741,902 + CA264_20595 0.68 -0.1 4,741,903 - CA264_20595 0.68 -0.2 4,742,012 + CA264_20595 0.82 -1.3 4,742,012 + CA264_20595 0.82 +1.1 4,742,013 - CA264_20595 0.82 +0.7 4,742,013 - CA264_20595 0.82 +0.2 4,742,024 + CA264_20595 0.84 -1.0 4,742,087 + +1.5 4,742,201 + -0.0 4,742,201 + +0.3 4,742,202 - +0.3 4,742,229 + +0.2 4,742,229 + -0.2 4,742,229 + +1.5 4,742,368 + -0.2 4,742,369 - +0.1 4,742,391 + CA264_20600 0.11 -0.2 4,742,392 - CA264_20600 0.12 -0.5 4,742,392 - CA264_20600 0.12 -0.9 4,742,462 + CA264_20600 0.22 +0.7 4,742,463 - CA264_20600 0.22 -0.1 4,742,493 + CA264_20600 0.26 -1.0 4,742,513 - CA264_20600 0.29 +0.2 4,742,586 - CA264_20600 0.40 -0.5 4,742,707 + CA264_20600 0.58 +0.1 4,742,708 - CA264_20600 0.58 -1.2 4,742,749 + CA264_20600 0.64 -0.3 4,742,861 + CA264_20600 0.81 -0.1 4,742,861 + CA264_20600 0.81 +0.4 4,742,862 - CA264_20600 0.81 -0.6 4,742,876 + CA264_20600 0.83 +1.7 4,742,876 + CA264_20600 0.83 -0.9 4,742,877 - CA264_20600 0.83 -0.3 4,742,999 + -0.3 4,743,000 - +0.0 4,743,002 - -0.2 4,743,004 + -1.3 4,743,004 + +1.0 4,743,018 + +0.6 4,743,070 + -0.8 4,743,077 + -0.5 4,743,096 + -0.7 4,743,100 + -0.5 4,743,100 + +1.6 4,743,100 + +0.1 4,743,101 - -0.9 4,743,101 - -0.5 4,743,101 - +2.1 4,743,104 - +0.3
Or see this region's nucleotide sequence