Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19670 and CA264_19675 are separated by 93 nucleotides CA264_19675 and CA264_19680 are separated by 185 nucleotides CA264_19680 and CA264_19685 are separated by 3 nucleotides CA264_19685 and CA264_19690 are separated by 247 nucleotides
CA264_19670: CA264_19670 - NADPH:quinone oxidoreductase, at 4,541,588 to 4,542,568
_19670
CA264_19675: CA264_19675 - RNA pseudouridine synthase, at 4,542,662 to 4,543,372
_19675
CA264_19680: CA264_19680 - two-component sensor histidine kinase, at 4,543,558 to 4,544,598
_19680
CA264_19685: CA264_19685 - DNA-binding response regulator, at 4,544,602 to 4,545,291
_19685
CA264_19690: CA264_19690 - ATP-dependent exodnase (exonuclease V) alpha subunit - helicase superfamily I member, at 4,545,539 to 4,546,348
_19690
Position (kb)
4543
4544
4545 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4542.820 kb on + strand, within CA264_19675 at 4542.821 kb on - strand, within CA264_19675 at 4542.847 kb on - strand, within CA264_19675 at 4542.865 kb on - strand, within CA264_19675 at 4542.865 kb on - strand, within CA264_19675 at 4542.872 kb on - strand, within CA264_19675 at 4542.879 kb on - strand, within CA264_19675 at 4542.887 kb on - strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4542.985 kb on + strand, within CA264_19675 at 4543.107 kb on + strand, within CA264_19675 at 4543.248 kb on - strand, within CA264_19675 at 4543.292 kb on - strand, within CA264_19675 at 4543.323 kb on + strand at 4543.341 kb on - strand at 4543.365 kb on + strand at 4543.365 kb on + strand at 4543.380 kb on + strand at 4543.381 kb on - strand at 4543.387 kb on + strand at 4543.430 kb on + strand at 4543.532 kb on + strand at 4543.560 kb on - strand at 4543.560 kb on - strand at 4543.940 kb on - strand, within CA264_19680 at 4544.247 kb on + strand, within CA264_19680 at 4544.248 kb on - strand, within CA264_19680 at 4544.367 kb on + strand, within CA264_19680 at 4544.402 kb on + strand, within CA264_19680 at 4544.403 kb on - strand, within CA264_19680 at 4544.404 kb on + strand, within CA264_19680 at 4544.449 kb on + strand, within CA264_19680 at 4544.580 kb on + strand at 4544.581 kb on - strand at 4544.600 kb on + strand at 4544.601 kb on - strand at 4544.601 kb on - strand at 4544.621 kb on + strand at 4544.884 kb on + strand, within CA264_19685 at 4545.200 kb on + strand, within CA264_19685 at 4545.227 kb on - strand at 4545.259 kb on + strand at 4545.273 kb on - strand at 4545.326 kb on + strand at 4545.359 kb on + strand at 4545.384 kb on + strand at 4545.392 kb on - strand at 4545.421 kb on + strand at 4545.424 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.426 kb on + strand at 4545.427 kb on - strand at 4545.427 kb on - strand at 4545.431 kb on + strand at 4545.477 kb on + strand at 4545.478 kb on - strand at 4545.577 kb on + strand at 4545.578 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 4,542,820 + CA264_19675 0.22 +0.3 4,542,821 - CA264_19675 0.22 -1.4 4,542,847 - CA264_19675 0.26 +0.1 4,542,865 - CA264_19675 0.29 -0.1 4,542,865 - CA264_19675 0.29 +1.1 4,542,872 - CA264_19675 0.30 -0.4 4,542,879 - CA264_19675 0.31 -0.4 4,542,887 - CA264_19675 0.32 +0.3 4,542,985 + CA264_19675 0.45 -1.4 4,542,985 + CA264_19675 0.45 -0.1 4,542,985 + CA264_19675 0.45 +0.5 4,543,107 + CA264_19675 0.63 +0.6 4,543,248 - CA264_19675 0.82 -0.0 4,543,292 - CA264_19675 0.89 +0.9 4,543,323 + +1.1 4,543,341 - -0.2 4,543,365 + -0.1 4,543,365 + +0.1 4,543,380 + +0.1 4,543,381 - -0.2 4,543,387 + -1.9 4,543,430 + +0.5 4,543,532 + +0.1 4,543,560 - +0.7 4,543,560 - +0.1 4,543,940 - CA264_19680 0.37 -1.7 4,544,247 + CA264_19680 0.66 +0.1 4,544,248 - CA264_19680 0.66 -1.2 4,544,367 + CA264_19680 0.78 -1.9 4,544,402 + CA264_19680 0.81 +0.4 4,544,403 - CA264_19680 0.81 +0.7 4,544,404 + CA264_19680 0.81 +1.1 4,544,449 + CA264_19680 0.86 -1.2 4,544,580 + +0.6 4,544,581 - -0.9 4,544,600 + +0.5 4,544,601 - -0.7 4,544,601 - -0.3 4,544,621 + -1.2 4,544,884 + CA264_19685 0.41 +1.1 4,545,200 + CA264_19685 0.87 +0.1 4,545,227 - -1.7 4,545,259 + +0.3 4,545,273 - -0.9 4,545,326 + +0.1 4,545,359 + +0.5 4,545,384 + +0.4 4,545,392 - -0.0 4,545,421 + -1.2 4,545,424 + -1.2 4,545,426 + +0.9 4,545,426 + -0.3 4,545,426 + -0.1 4,545,426 + +0.3 4,545,427 - -1.2 4,545,427 - -0.7 4,545,431 + +1.0 4,545,477 + -0.2 4,545,478 - +0.1 4,545,577 + +0.7 4,545,578 - +1.9
Or see this region's nucleotide sequence