Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19445 and CA264_19450 are separated by 3 nucleotides CA264_19450 and CA264_19455 are separated by 0 nucleotides CA264_19455 and CA264_19460 are separated by 4 nucleotides CA264_19460 and CA264_19465 are separated by 9 nucleotides CA264_19465 and CA264_19470 are separated by 10 nucleotides
CA264_19445: CA264_19445 - preprotein translocase subunit SecY, at 4,497,376 to 4,498,692
_19445
CA264_19450: CA264_19450 - type I methionyl aminopeptidase, at 4,498,696 to 4,499,469
_19450
CA264_19455: CA264_19455 - translation initiation factor IF-1, at 4,499,470 to 4,499,688
_19455
CA264_19460: CA264_19460 - 50S ribosomal protein L36, at 4,499,693 to 4,499,809
_19460
CA264_19465: CA264_19465 - 30S ribosomal protein S13, at 4,499,819 to 4,500,196
_19465
CA264_19470: CA264_19470 - 30S ribosomal protein S11, at 4,500,207 to 4,500,599
_19470
Position (kb)
4498
4499
4500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4498.656 kb on - strand at 4498.690 kb on + strand at 4498.691 kb on - strand at 4498.700 kb on + strand at 4498.919 kb on + strand, within CA264_19450 at 4498.938 kb on + strand, within CA264_19450 at 4498.943 kb on - strand, within CA264_19450 at 4499.030 kb on + strand, within CA264_19450 at 4499.086 kb on + strand, within CA264_19450 at 4499.132 kb on + strand, within CA264_19450 at 4499.132 kb on + strand, within CA264_19450 at 4499.133 kb on - strand, within CA264_19450 at 4499.172 kb on + strand, within CA264_19450 at 4499.172 kb on + strand, within CA264_19450 at 4499.242 kb on + strand, within CA264_19450 at 4499.306 kb on + strand, within CA264_19450 at 4499.325 kb on + strand, within CA264_19450 at 4499.325 kb on + strand, within CA264_19450 at 4499.406 kb on - strand at 4499.447 kb on + strand at 4499.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 4,498,656 - -0.8 4,498,690 + -0.0 4,498,691 - +3.5 4,498,700 + -1.2 4,498,919 + CA264_19450 0.29 -0.9 4,498,938 + CA264_19450 0.31 +0.4 4,498,943 - CA264_19450 0.32 -2.8 4,499,030 + CA264_19450 0.43 -1.4 4,499,086 + CA264_19450 0.50 -3.4 4,499,132 + CA264_19450 0.56 -0.6 4,499,132 + CA264_19450 0.56 -0.8 4,499,133 - CA264_19450 0.56 -2.2 4,499,172 + CA264_19450 0.61 +1.2 4,499,172 + CA264_19450 0.61 -2.0 4,499,242 + CA264_19450 0.71 +0.2 4,499,306 + CA264_19450 0.79 -0.8 4,499,325 + CA264_19450 0.81 -2.2 4,499,325 + CA264_19450 0.81 -0.8 4,499,406 - -0.8 4,499,447 + -0.2 4,499,448 - -1.2
Or see this region's nucleotide sequence