Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19450

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19445 and CA264_19450 are separated by 3 nucleotidesCA264_19450 and CA264_19455 are separated by 0 nucleotidesCA264_19455 and CA264_19460 are separated by 4 nucleotidesCA264_19460 and CA264_19465 are separated by 9 nucleotidesCA264_19465 and CA264_19470 are separated by 10 nucleotides CA264_19445: CA264_19445 - preprotein translocase subunit SecY, at 4,497,376 to 4,498,692 _19445 CA264_19450: CA264_19450 - type I methionyl aminopeptidase, at 4,498,696 to 4,499,469 _19450 CA264_19455: CA264_19455 - translation initiation factor IF-1, at 4,499,470 to 4,499,688 _19455 CA264_19460: CA264_19460 - 50S ribosomal protein L36, at 4,499,693 to 4,499,809 _19460 CA264_19465: CA264_19465 - 30S ribosomal protein S13, at 4,499,819 to 4,500,196 _19465 CA264_19470: CA264_19470 - 30S ribosomal protein S11, at 4,500,207 to 4,500,599 _19470 Position (kb) 4498 4499 4500Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4498.656 kb on - strandat 4498.690 kb on + strandat 4498.691 kb on - strandat 4498.700 kb on + strandat 4498.919 kb on + strand, within CA264_19450at 4498.938 kb on + strand, within CA264_19450at 4498.943 kb on - strand, within CA264_19450at 4499.030 kb on + strand, within CA264_19450at 4499.086 kb on + strand, within CA264_19450at 4499.132 kb on + strand, within CA264_19450at 4499.132 kb on + strand, within CA264_19450at 4499.133 kb on - strand, within CA264_19450at 4499.172 kb on + strand, within CA264_19450at 4499.172 kb on + strand, within CA264_19450at 4499.242 kb on + strand, within CA264_19450at 4499.306 kb on + strand, within CA264_19450at 4499.325 kb on + strand, within CA264_19450at 4499.325 kb on + strand, within CA264_19450at 4499.406 kb on - strandat 4499.447 kb on + strandat 4499.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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4,498,656 - -0.8
4,498,690 + -0.0
4,498,691 - +3.5
4,498,700 + -1.2
4,498,919 + CA264_19450 0.29 -0.9
4,498,938 + CA264_19450 0.31 +0.4
4,498,943 - CA264_19450 0.32 -2.8
4,499,030 + CA264_19450 0.43 -1.4
4,499,086 + CA264_19450 0.50 -3.4
4,499,132 + CA264_19450 0.56 -0.6
4,499,132 + CA264_19450 0.56 -0.8
4,499,133 - CA264_19450 0.56 -2.2
4,499,172 + CA264_19450 0.61 +1.2
4,499,172 + CA264_19450 0.61 -2.0
4,499,242 + CA264_19450 0.71 +0.2
4,499,306 + CA264_19450 0.79 -0.8
4,499,325 + CA264_19450 0.81 -2.2
4,499,325 + CA264_19450 0.81 -0.8
4,499,406 - -0.8
4,499,447 + -0.2
4,499,448 - -1.2

Or see this region's nucleotide sequence