Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18680

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18670 and CA264_18675 are separated by 122 nucleotidesCA264_18675 and CA264_18680 are separated by 128 nucleotidesCA264_18680 and CA264_18685 are separated by 78 nucleotidesCA264_18685 and CA264_18690 are separated by 116 nucleotides CA264_18670: CA264_18670 - cold-shock protein, at 4,338,729 to 4,338,923 _18670 CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543 _18675 CA264_18680: CA264_18680 - Fe-S assembly protein IscX, at 4,339,672 to 4,339,908 _18680 CA264_18685: CA264_18685 - ferredoxin, at 4,339,987 to 4,340,301 _18685 CA264_18690: CA264_18690 - hypothetical protein, at 4,340,418 to 4,341,197 _18690 Position (kb) 4339 4340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4338.721 kb on - strandat 4338.721 kb on - strandat 4338.747 kb on + strandat 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.774 kb on + strand, within CA264_18670at 4338.775 kb on - strand, within CA264_18670at 4338.887 kb on + strand, within CA264_18670at 4338.928 kb on - strandat 4338.983 kb on + strandat 4338.983 kb on + strandat 4339.071 kb on - strandat 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.224 kb on + strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.225 kb on - strand, within CA264_18675at 4339.230 kb on - strand, within CA264_18675at 4339.244 kb on + strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.258 kb on - strand, within CA264_18675at 4339.264 kb on - strand, within CA264_18675at 4339.313 kb on + strand, within CA264_18675at 4339.481 kb on + strand, within CA264_18675at 4339.569 kb on + strandat 4339.574 kb on + strandat 4339.575 kb on - strandat 4339.634 kb on - strandat 4339.908 kb on + strandat 4339.930 kb on - strandat 4339.943 kb on + strandat 4339.981 kb on - strandat 4340.334 kb on - strandat 4340.334 kb on - strandat 4340.347 kb on - strandat 4340.443 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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4,338,721 - -0.4
4,338,721 - -0.1
4,338,747 + -2.2
4,338,774 + CA264_18670 0.23 -0.2
4,338,774 + CA264_18670 0.23 -0.7
4,338,774 + CA264_18670 0.23 -1.6
4,338,774 + CA264_18670 0.23 -0.5
4,338,774 + CA264_18670 0.23 +2.0
4,338,775 - CA264_18670 0.24 +0.5
4,338,887 + CA264_18670 0.81 -0.7
4,338,928 - -1.6
4,338,983 + +0.7
4,338,983 + +1.6
4,339,071 - -0.8
4,339,224 + CA264_18675 0.36 -2.0
4,339,224 + CA264_18675 0.36 +0.2
4,339,224 + CA264_18675 0.36 +0.1
4,339,225 - CA264_18675 0.36 -1.6
4,339,225 - CA264_18675 0.36 +0.6
4,339,225 - CA264_18675 0.36 -3.6
4,339,225 - CA264_18675 0.36 -1.3
4,339,230 - CA264_18675 0.37 +0.6
4,339,244 + CA264_18675 0.40 +0.2
4,339,258 - CA264_18675 0.43 -2.4
4,339,258 - CA264_18675 0.43 +1.2
4,339,264 - CA264_18675 0.44 -1.8
4,339,313 + CA264_18675 0.54 -2.5
4,339,481 + CA264_18675 0.87 -1.0
4,339,569 + +0.2
4,339,574 + +1.5
4,339,575 - +0.3
4,339,634 - +0.4
4,339,908 + -1.2
4,339,930 - +1.0
4,339,943 + -0.4
4,339,981 - -0.0
4,340,334 - -0.1
4,340,334 - -0.5
4,340,347 - +2.2
4,340,443 - -1.7

Or see this region's nucleotide sequence