Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_18665 and CA264_18670 are separated by 107 nucleotides CA264_18670 and CA264_18675 are separated by 122 nucleotides CA264_18675 and CA264_18680 are separated by 128 nucleotides
CA264_18665: CA264_18665 - prenyltransferase, at 4,337,779 to 4,338,621
_18665
CA264_18670: CA264_18670 - cold-shock protein, at 4,338,729 to 4,338,923
_18670
CA264_18675: CA264_18675 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 4,339,046 to 4,339,543
_18675
CA264_18680: CA264_18680 - Fe-S assembly protein IscX, at 4,339,672 to 4,339,908
_18680
Position (kb) 4338
4339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4337.733 kb on - strand at 4337.780 kb on + strand at 4337.817 kb on + strand at 4337.921 kb on + strand, within CA264_18665 at 4337.922 kb on - strand, within CA264_18665 at 4337.922 kb on - strand, within CA264_18665 at 4338.037 kb on - strand, within CA264_18665 at 4338.112 kb on + strand, within CA264_18665 at 4338.113 kb on - strand, within CA264_18665 at 4338.127 kb on + strand, within CA264_18665 at 4338.145 kb on - strand, within CA264_18665 at 4338.214 kb on + strand, within CA264_18665 at 4338.376 kb on + strand, within CA264_18665 at 4338.435 kb on - strand, within CA264_18665 at 4338.448 kb on - strand, within CA264_18665 at 4338.452 kb on + strand, within CA264_18665 at 4338.598 kb on + strand at 4338.599 kb on - strand at 4338.612 kb on + strand at 4338.613 kb on - strand at 4338.614 kb on + strand at 4338.648 kb on + strand at 4338.648 kb on + strand at 4338.721 kb on - strand at 4338.721 kb on - strand at 4338.747 kb on + strand at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.774 kb on + strand, within CA264_18670 at 4338.775 kb on - strand, within CA264_18670 at 4338.887 kb on + strand, within CA264_18670 at 4338.928 kb on - strand at 4338.983 kb on + strand at 4338.983 kb on + strand at 4339.071 kb on - strand at 4339.224 kb on + strand, within CA264_18675 at 4339.224 kb on + strand, within CA264_18675 at 4339.224 kb on + strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.225 kb on - strand, within CA264_18675 at 4339.230 kb on - strand, within CA264_18675 at 4339.244 kb on + strand, within CA264_18675 at 4339.258 kb on - strand, within CA264_18675 at 4339.258 kb on - strand, within CA264_18675 at 4339.264 kb on - strand, within CA264_18675 at 4339.313 kb on + strand, within CA264_18675 at 4339.481 kb on + strand, within CA264_18675 at 4339.569 kb on + strand at 4339.574 kb on + strand at 4339.575 kb on - strand at 4339.634 kb on - strand at 4339.908 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 4,337,733 - +0.2 4,337,780 + -0.2 4,337,817 + -1.2 4,337,921 + CA264_18665 0.17 +0.6 4,337,922 - CA264_18665 0.17 +0.5 4,337,922 - CA264_18665 0.17 +0.7 4,338,037 - CA264_18665 0.31 +0.0 4,338,112 + CA264_18665 0.40 +1.1 4,338,113 - CA264_18665 0.40 -0.1 4,338,127 + CA264_18665 0.41 +0.4 4,338,145 - CA264_18665 0.43 +0.5 4,338,214 + CA264_18665 0.52 +0.0 4,338,376 + CA264_18665 0.71 +0.2 4,338,435 - CA264_18665 0.78 -0.2 4,338,448 - CA264_18665 0.79 +0.1 4,338,452 + CA264_18665 0.80 +1.3 4,338,598 + +0.2 4,338,599 - +0.1 4,338,612 + +0.6 4,338,613 - +0.6 4,338,614 + +0.2 4,338,648 + -0.7 4,338,648 + -0.9 4,338,721 - -0.4 4,338,721 - -0.1 4,338,747 + -2.2 4,338,774 + CA264_18670 0.23 -0.2 4,338,774 + CA264_18670 0.23 -0.7 4,338,774 + CA264_18670 0.23 -1.6 4,338,774 + CA264_18670 0.23 -0.5 4,338,774 + CA264_18670 0.23 +2.0 4,338,775 - CA264_18670 0.24 +0.5 4,338,887 + CA264_18670 0.81 -0.7 4,338,928 - -1.6 4,338,983 + +0.7 4,338,983 + +1.6 4,339,071 - -0.8 4,339,224 + CA264_18675 0.36 -2.0 4,339,224 + CA264_18675 0.36 +0.2 4,339,224 + CA264_18675 0.36 +0.1 4,339,225 - CA264_18675 0.36 -1.6 4,339,225 - CA264_18675 0.36 +0.6 4,339,225 - CA264_18675 0.36 -3.6 4,339,225 - CA264_18675 0.36 -1.3 4,339,230 - CA264_18675 0.37 +0.6 4,339,244 + CA264_18675 0.40 +0.2 4,339,258 - CA264_18675 0.43 -2.4 4,339,258 - CA264_18675 0.43 +1.2 4,339,264 - CA264_18675 0.44 -1.8 4,339,313 + CA264_18675 0.54 -2.5 4,339,481 + CA264_18675 0.87 -1.0 4,339,569 + +0.2 4,339,574 + +1.5 4,339,575 - +0.3 4,339,634 - +0.4 4,339,908 + -1.2
Or see this region's nucleotide sequence