Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17815

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17810 and CA264_17815 are separated by 334 nucleotidesCA264_17815 and CA264_17820 are separated by 13 nucleotides CA264_17810: CA264_17810 - hypothetical protein, at 4,139,348 to 4,141,834 _17810 CA264_17815: CA264_17815 - hypothetical protein, at 4,142,169 to 4,143,347 _17815 CA264_17820: CA264_17820 - amino acid dehydrogenase, at 4,143,361 to 4,144,593 _17820 Position (kb) 4142 4143 4144Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4141.267 kb on - strand, within CA264_17810at 4141.360 kb on + strand, within CA264_17810at 4141.360 kb on + strand, within CA264_17810at 4141.459 kb on + strand, within CA264_17810at 4141.460 kb on - strand, within CA264_17810at 4141.462 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.548 kb on - strand, within CA264_17810at 4141.636 kb on + strandat 4141.636 kb on + strandat 4141.636 kb on + strandat 4141.637 kb on - strandat 4141.637 kb on - strandat 4141.637 kb on - strandat 4141.833 kb on - strandat 4141.833 kb on - strandat 4141.879 kb on + strandat 4141.979 kb on + strandat 4141.979 kb on + strandat 4141.979 kb on + strandat 4141.987 kb on + strandat 4142.032 kb on - strandat 4142.080 kb on + strandat 4142.080 kb on + strandat 4142.114 kb on + strandat 4142.120 kb on + strandat 4142.161 kb on - strandat 4142.170 kb on + strandat 4142.222 kb on + strandat 4142.222 kb on + strandat 4142.222 kb on + strandat 4142.223 kb on - strandat 4142.223 kb on - strandat 4142.245 kb on + strandat 4142.245 kb on + strandat 4142.298 kb on + strand, within CA264_17815at 4142.325 kb on - strand, within CA264_17815at 4142.365 kb on + strand, within CA264_17815at 4142.366 kb on - strand, within CA264_17815at 4142.449 kb on - strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.452 kb on + strand, within CA264_17815at 4142.453 kb on - strand, within CA264_17815at 4142.460 kb on + strand, within CA264_17815at 4142.472 kb on - strand, within CA264_17815at 4142.503 kb on + strand, within CA264_17815at 4142.504 kb on - strand, within CA264_17815at 4143.074 kb on - strand, within CA264_17815at 4143.135 kb on + strand, within CA264_17815at 4143.136 kb on - strand, within CA264_17815at 4143.240 kb on - strandat 4143.275 kb on - strandat 4143.348 kb on - strandat 4143.348 kb on - strandat 4143.362 kb on + strandat 4143.468 kb on + strandat 4143.481 kb on - strandat 4143.760 kb on + strand, within CA264_17820at 4143.887 kb on - strand, within CA264_17820at 4143.887 kb on - strand, within CA264_17820at 4143.891 kb on + strand, within CA264_17820at 4143.961 kb on + strand, within CA264_17820at 4144.065 kb on + strand, within CA264_17820at 4144.304 kb on + strand, within CA264_17820

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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4,141,267 - CA264_17810 0.77 +0.3
4,141,360 + CA264_17810 0.81 -1.0
4,141,360 + CA264_17810 0.81 +0.1
4,141,459 + CA264_17810 0.85 -0.6
4,141,460 - CA264_17810 0.85 +0.6
4,141,462 - CA264_17810 0.85 -0.7
4,141,548 - CA264_17810 0.88 -3.0
4,141,548 - CA264_17810 0.88 -0.0
4,141,548 - CA264_17810 0.88 +0.9
4,141,548 - CA264_17810 0.88 -0.8
4,141,636 + -0.2
4,141,636 + +0.3
4,141,636 + +0.6
4,141,637 - +0.5
4,141,637 - -1.0
4,141,637 - +0.0
4,141,833 - +0.0
4,141,833 - -0.6
4,141,879 + -0.3
4,141,979 + -0.1
4,141,979 + +0.3
4,141,979 + -0.2
4,141,987 + +1.2
4,142,032 - +0.6
4,142,080 + -0.7
4,142,080 + +0.1
4,142,114 + +0.7
4,142,120 + -0.2
4,142,161 - -0.0
4,142,170 + -0.1
4,142,222 + +0.4
4,142,222 + +0.2
4,142,222 + +0.0
4,142,223 - +0.7
4,142,223 - -0.3
4,142,245 + -0.4
4,142,245 + -0.5
4,142,298 + CA264_17815 0.11 -0.0
4,142,325 - CA264_17815 0.13 -1.6
4,142,365 + CA264_17815 0.17 +0.6
4,142,366 - CA264_17815 0.17 +0.5
4,142,449 - CA264_17815 0.24 -0.2
4,142,452 + CA264_17815 0.24 -0.7
4,142,452 + CA264_17815 0.24 +1.9
4,142,453 - CA264_17815 0.24 -0.7
4,142,460 + CA264_17815 0.25 +0.1
4,142,472 - CA264_17815 0.26 +0.3
4,142,503 + CA264_17815 0.28 -0.2
4,142,504 - CA264_17815 0.28 -0.2
4,143,074 - CA264_17815 0.77 -0.2
4,143,135 + CA264_17815 0.82 -0.8
4,143,136 - CA264_17815 0.82 +0.4
4,143,240 - -0.5
4,143,275 - -1.0
4,143,348 - -1.5
4,143,348 - -3.9
4,143,362 + -0.0
4,143,468 + +0.3
4,143,481 - +0.1
4,143,760 + CA264_17820 0.32 -1.9
4,143,887 - CA264_17820 0.43 +0.9
4,143,887 - CA264_17820 0.43 -0.3
4,143,891 + CA264_17820 0.43 +0.3
4,143,961 + CA264_17820 0.49 -1.4
4,144,065 + CA264_17820 0.57 -3.5
4,144,304 + CA264_17820 0.76 -2.2

Or see this region's nucleotide sequence