Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15695

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15685 and CA264_15690 are separated by 100 nucleotidesCA264_15690 and CA264_15695 overlap by 1 nucleotidesCA264_15695 and CA264_15700 are separated by 171 nucleotides CA264_15685: CA264_15685 - 30S ribosomal protein S12 methylthiotransferase RimO, at 3,661,171 to 3,662,484 _15685 CA264_15690: CA264_15690 - hypothetical protein, at 3,662,585 to 3,662,968 _15690 CA264_15695: CA264_15695 - T9SS C-terminal target domain-containing protein, at 3,662,968 to 3,665,214 _15695 CA264_15700: CA264_15700 - UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase, at 3,665,386 to 3,666,675 _15700 Position (kb) 3662 3663 3664 3665 3666Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3662.052 kb on - strand, within CA264_15685at 3662.063 kb on + strand, within CA264_15685at 3662.063 kb on + strand, within CA264_15685at 3662.064 kb on - strand, within CA264_15685at 3662.111 kb on - strand, within CA264_15685at 3662.111 kb on - strand, within CA264_15685at 3662.154 kb on + strand, within CA264_15685at 3662.154 kb on + strand, within CA264_15685at 3662.155 kb on - strand, within CA264_15685at 3662.155 kb on - strand, within CA264_15685at 3662.185 kb on + strand, within CA264_15685at 3662.186 kb on - strand, within CA264_15685at 3662.193 kb on - strand, within CA264_15685at 3662.307 kb on - strand, within CA264_15685at 3662.307 kb on - strand, within CA264_15685at 3662.346 kb on + strand, within CA264_15685at 3662.353 kb on + strandat 3662.353 kb on + strandat 3662.382 kb on - strandat 3662.382 kb on - strandat 3662.405 kb on - strandat 3662.440 kb on - strandat 3662.475 kb on - strandat 3662.477 kb on + strandat 3662.477 kb on + strandat 3662.478 kb on - strandat 3662.483 kb on - strandat 3662.495 kb on + strandat 3662.502 kb on - strandat 3662.506 kb on + strandat 3662.507 kb on - strandat 3662.511 kb on - strandat 3662.534 kb on + strandat 3662.534 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.536 kb on + strandat 3662.537 kb on - strandat 3662.537 kb on - strandat 3662.537 kb on - strandat 3662.657 kb on + strand, within CA264_15690at 3662.702 kb on + strand, within CA264_15690at 3662.786 kb on - strand, within CA264_15690at 3662.841 kb on - strand, within CA264_15690at 3662.873 kb on + strand, within CA264_15690at 3662.874 kb on - strand, within CA264_15690at 3662.874 kb on - strand, within CA264_15690at 3662.874 kb on - strand, within CA264_15690at 3663.029 kb on + strandat 3663.029 kb on + strandat 3663.029 kb on + strandat 3663.029 kb on + strandat 3663.030 kb on - strandat 3663.030 kb on - strandat 3663.030 kb on - strandat 3663.030 kb on - strandat 3663.058 kb on + strandat 3663.059 kb on - strandat 3663.059 kb on - strandat 3663.059 kb on - strandat 3663.064 kb on - strandat 3663.077 kb on + strandat 3663.095 kb on + strandat 3663.119 kb on + strandat 3663.120 kb on - strandat 3663.151 kb on + strandat 3663.151 kb on + strandat 3663.151 kb on + strandat 3663.183 kb on - strandat 3663.194 kb on + strand, within CA264_15695at 3663.195 kb on - strand, within CA264_15695at 3663.196 kb on + strand, within CA264_15695at 3663.196 kb on + strand, within CA264_15695at 3663.264 kb on - strand, within CA264_15695at 3663.410 kb on + strand, within CA264_15695at 3663.411 kb on - strand, within CA264_15695at 3663.451 kb on + strand, within CA264_15695at 3663.509 kb on + strand, within CA264_15695at 3663.528 kb on - strand, within CA264_15695at 3663.580 kb on - strand, within CA264_15695at 3663.580 kb on - strand, within CA264_15695at 3663.719 kb on - strand, within CA264_15695at 3663.719 kb on - strand, within CA264_15695at 3663.722 kb on - strand, within CA264_15695at 3663.722 kb on - strand, within CA264_15695at 3663.735 kb on - strand, within CA264_15695at 3663.746 kb on + strand, within CA264_15695at 3663.802 kb on - strand, within CA264_15695at 3663.822 kb on + strand, within CA264_15695at 3663.880 kb on + strand, within CA264_15695at 3663.887 kb on + strand, within CA264_15695at 3663.935 kb on + strand, within CA264_15695at 3663.935 kb on + strand, within CA264_15695at 3663.936 kb on - strand, within CA264_15695at 3663.936 kb on - strand, within CA264_15695at 3663.936 kb on - strand, within CA264_15695at 3663.989 kb on + strand, within CA264_15695at 3663.989 kb on + strand, within CA264_15695at 3663.989 kb on + strand, within CA264_15695at 3663.989 kb on + strand, within CA264_15695at 3663.989 kb on + strand, within CA264_15695at 3663.990 kb on - strand, within CA264_15695at 3664.053 kb on + strand, within CA264_15695at 3664.174 kb on - strand, within CA264_15695at 3664.262 kb on + strand, within CA264_15695at 3664.263 kb on - strand, within CA264_15695at 3664.265 kb on + strand, within CA264_15695at 3664.278 kb on - strand, within CA264_15695at 3664.470 kb on + strand, within CA264_15695at 3664.482 kb on + strand, within CA264_15695at 3664.522 kb on - strand, within CA264_15695at 3664.551 kb on + strand, within CA264_15695at 3664.552 kb on - strand, within CA264_15695at 3664.694 kb on - strand, within CA264_15695at 3664.694 kb on - strand, within CA264_15695at 3664.734 kb on + strand, within CA264_15695at 3664.735 kb on - strand, within CA264_15695at 3664.735 kb on - strand, within CA264_15695at 3664.735 kb on - strand, within CA264_15695at 3664.875 kb on - strand, within CA264_15695at 3664.937 kb on + strand, within CA264_15695at 3664.937 kb on + strand, within CA264_15695at 3664.938 kb on - strand, within CA264_15695at 3664.938 kb on - strand, within CA264_15695at 3664.980 kb on + strand, within CA264_15695at 3664.981 kb on - strand, within CA264_15695at 3665.119 kb on + strandat 3665.177 kb on - strandat 3665.180 kb on - strandat 3665.185 kb on + strandat 3665.186 kb on - strandat 3665.186 kb on - strandat 3665.253 kb on - strandat 3665.253 kb on - strandat 3665.291 kb on + strandat 3665.326 kb on - strandat 3665.341 kb on + strandat 3665.376 kb on + strandat 3665.376 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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3,662,052 - CA264_15685 0.67 -0.8
3,662,063 + CA264_15685 0.68 -0.4
3,662,063 + CA264_15685 0.68 +0.4
3,662,064 - CA264_15685 0.68 -1.0
3,662,111 - CA264_15685 0.72 +0.1
3,662,111 - CA264_15685 0.72 -0.0
3,662,154 + CA264_15685 0.75 +0.0
3,662,154 + CA264_15685 0.75 +0.1
3,662,155 - CA264_15685 0.75 +1.2
3,662,155 - CA264_15685 0.75 -1.4
3,662,185 + CA264_15685 0.77 -0.8
3,662,186 - CA264_15685 0.77 -0.2
3,662,193 - CA264_15685 0.78 -0.3
3,662,307 - CA264_15685 0.86 +0.2
3,662,307 - CA264_15685 0.86 -0.8
3,662,346 + CA264_15685 0.89 +0.2
3,662,353 + +0.7
3,662,353 + +0.0
3,662,382 - -1.3
3,662,382 - +0.1
3,662,405 - +0.0
3,662,440 - -1.1
3,662,475 - +0.6
3,662,477 + -0.7
3,662,477 + -0.0
3,662,478 - +0.3
3,662,483 - +1.0
3,662,495 + +0.6
3,662,502 - +0.7
3,662,506 + -0.7
3,662,507 - +0.4
3,662,511 - +0.2
3,662,534 + +0.4
3,662,534 + +0.5
3,662,536 + -0.8
3,662,536 + -1.4
3,662,536 + -0.2
3,662,536 + +2.2
3,662,536 + -0.0
3,662,536 + -0.6
3,662,536 + +1.9
3,662,537 - -0.6
3,662,537 - -0.3
3,662,537 - -0.0
3,662,657 + CA264_15690 0.19 -0.6
3,662,702 + CA264_15690 0.30 -0.9
3,662,786 - CA264_15690 0.52 -1.6
3,662,841 - CA264_15690 0.67 +0.2
3,662,873 + CA264_15690 0.75 -0.9
3,662,874 - CA264_15690 0.75 -0.8
3,662,874 - CA264_15690 0.75 +0.3
3,662,874 - CA264_15690 0.75 -0.8
3,663,029 + +0.6
3,663,029 + -0.0
3,663,029 + -0.5
3,663,029 + -0.5
3,663,030 - -0.2
3,663,030 - -0.5
3,663,030 - +0.1
3,663,030 - -1.0
3,663,058 + -0.2
3,663,059 - -0.4
3,663,059 - -0.5
3,663,059 - +0.6
3,663,064 - -0.2
3,663,077 + -1.1
3,663,095 + -0.6
3,663,119 + +0.2
3,663,120 - +0.2
3,663,151 + -0.9
3,663,151 + +0.1
3,663,151 + -0.2
3,663,183 - -0.2
3,663,194 + CA264_15695 0.10 +0.1
3,663,195 - CA264_15695 0.10 -1.1
3,663,196 + CA264_15695 0.10 +0.0
3,663,196 + CA264_15695 0.10 +1.6
3,663,264 - CA264_15695 0.13 +1.2
3,663,410 + CA264_15695 0.20 -1.4
3,663,411 - CA264_15695 0.20 +0.3
3,663,451 + CA264_15695 0.21 -0.4
3,663,509 + CA264_15695 0.24 -0.1
3,663,528 - CA264_15695 0.25 -0.2
3,663,580 - CA264_15695 0.27 +0.0
3,663,580 - CA264_15695 0.27 +0.6
3,663,719 - CA264_15695 0.33 -0.7
3,663,719 - CA264_15695 0.33 +0.9
3,663,722 - CA264_15695 0.34 +1.2
3,663,722 - CA264_15695 0.34 -0.2
3,663,735 - CA264_15695 0.34 +0.2
3,663,746 + CA264_15695 0.35 -0.6
3,663,802 - CA264_15695 0.37 -2.6
3,663,822 + CA264_15695 0.38 -1.5
3,663,880 + CA264_15695 0.41 -1.1
3,663,887 + CA264_15695 0.41 -0.5
3,663,935 + CA264_15695 0.43 +0.2
3,663,935 + CA264_15695 0.43 -1.4
3,663,936 - CA264_15695 0.43 +0.2
3,663,936 - CA264_15695 0.43 -0.2
3,663,936 - CA264_15695 0.43 -0.4
3,663,989 + CA264_15695 0.45 -1.9
3,663,989 + CA264_15695 0.45 -0.2
3,663,989 + CA264_15695 0.45 +0.2
3,663,989 + CA264_15695 0.45 -1.4
3,663,989 + CA264_15695 0.45 -0.3
3,663,990 - CA264_15695 0.45 +0.2
3,664,053 + CA264_15695 0.48 -3.0
3,664,174 - CA264_15695 0.54 -0.2
3,664,262 + CA264_15695 0.58 -2.7
3,664,263 - CA264_15695 0.58 +0.2
3,664,265 + CA264_15695 0.58 -0.6
3,664,278 - CA264_15695 0.58 -1.0
3,664,470 + CA264_15695 0.67 -1.5
3,664,482 + CA264_15695 0.67 -2.2
3,664,522 - CA264_15695 0.69 -0.7
3,664,551 + CA264_15695 0.70 -3.6
3,664,552 - CA264_15695 0.70 -0.7
3,664,694 - CA264_15695 0.77 -1.6
3,664,694 - CA264_15695 0.77 -0.4
3,664,734 + CA264_15695 0.79 -2.4
3,664,735 - CA264_15695 0.79 -1.0
3,664,735 - CA264_15695 0.79 -1.3
3,664,735 - CA264_15695 0.79 -1.2
3,664,875 - CA264_15695 0.85 -3.0
3,664,937 + CA264_15695 0.88 -2.7
3,664,937 + CA264_15695 0.88 -3.3
3,664,938 - CA264_15695 0.88 +0.2
3,664,938 - CA264_15695 0.88 -2.4
3,664,980 + CA264_15695 0.90 -2.1
3,664,981 - CA264_15695 0.90 -3.0
3,665,119 + -2.5
3,665,177 - -1.8
3,665,180 - -1.1
3,665,185 + -3.1
3,665,186 - -3.4
3,665,186 - -3.0
3,665,253 - -2.7
3,665,253 - -4.3
3,665,291 + -2.3
3,665,326 - +0.5
3,665,341 + -0.8
3,665,376 + +0.6
3,665,376 + +1.0

Or see this region's nucleotide sequence