Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13125

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13115 and CA264_13120 are separated by 163 nucleotidesCA264_13120 and CA264_13125 are separated by 100 nucleotidesCA264_13125 and CA264_13130 are separated by 44 nucleotides CA264_13115: CA264_13115 - proline dehydrogenase, at 3,059,334 to 3,060,521 _13115 CA264_13120: CA264_13120 - hypothetical protein, at 3,060,685 to 3,060,924 _13120 CA264_13125: CA264_13125 - RNA polymerase subunit sigma-70, at 3,061,025 to 3,061,597 _13125 CA264_13130: CA264_13130 - peptidase S1, at 3,061,642 to 3,062,730 _13130 Position (kb) 3061 3062Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3060.051 kb on + strand, within CA264_13115at 3060.051 kb on + strand, within CA264_13115at 3060.081 kb on + strand, within CA264_13115at 3060.081 kb on + strand, within CA264_13115at 3060.121 kb on - strand, within CA264_13115at 3060.199 kb on + strand, within CA264_13115at 3060.200 kb on - strand, within CA264_13115at 3060.247 kb on - strand, within CA264_13115at 3060.304 kb on - strand, within CA264_13115at 3060.304 kb on - strand, within CA264_13115at 3060.342 kb on + strand, within CA264_13115at 3060.342 kb on + strand, within CA264_13115at 3060.343 kb on - strand, within CA264_13115at 3060.364 kb on - strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.378 kb on + strand, within CA264_13115at 3060.379 kb on - strand, within CA264_13115at 3060.654 kb on + strandat 3060.661 kb on + strandat 3060.677 kb on - strandat 3060.681 kb on - strandat 3060.851 kb on - strand, within CA264_13120at 3060.940 kb on - strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.128 kb on + strand, within CA264_13125at 3061.139 kb on - strand, within CA264_13125at 3061.182 kb on - strand, within CA264_13125at 3061.216 kb on - strand, within CA264_13125at 3061.256 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.340 kb on - strand, within CA264_13125at 3061.347 kb on + strand, within CA264_13125at 3061.458 kb on - strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.465 kb on - strand, within CA264_13125at 3061.506 kb on - strand, within CA264_13125at 3061.538 kb on + strand, within CA264_13125at 3061.593 kb on + strandat 3061.596 kb on - strandat 3061.596 kb on - strandat 3061.596 kb on - strandat 3061.605 kb on - strandat 3061.609 kb on + strandat 3061.651 kb on + strandat 3061.651 kb on + strandat 3061.660 kb on + strandat 3061.670 kb on + strandat 3061.678 kb on + strandat 3061.818 kb on - strand, within CA264_13130at 3061.985 kb on + strand, within CA264_13130at 3062.017 kb on + strand, within CA264_13130at 3062.018 kb on - strand, within CA264_13130at 3062.082 kb on + strand, within CA264_13130at 3062.163 kb on - strand, within CA264_13130at 3062.245 kb on + strand, within CA264_13130at 3062.320 kb on + strand, within CA264_13130at 3062.320 kb on + strand, within CA264_13130at 3062.321 kb on - strand, within CA264_13130at 3062.321 kb on - strand, within CA264_13130at 3062.597 kb on + strand, within CA264_13130at 3062.597 kb on + strand, within CA264_13130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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3,060,051 + CA264_13115 0.60 +0.4
3,060,051 + CA264_13115 0.60 +0.0
3,060,081 + CA264_13115 0.63 -0.0
3,060,081 + CA264_13115 0.63 -0.0
3,060,121 - CA264_13115 0.66 +0.4
3,060,199 + CA264_13115 0.73 -1.6
3,060,200 - CA264_13115 0.73 -0.8
3,060,247 - CA264_13115 0.77 +0.1
3,060,304 - CA264_13115 0.82 -0.4
3,060,304 - CA264_13115 0.82 -0.5
3,060,342 + CA264_13115 0.85 +0.8
3,060,342 + CA264_13115 0.85 -0.6
3,060,343 - CA264_13115 0.85 -1.9
3,060,364 - CA264_13115 0.87 +0.5
3,060,378 + CA264_13115 0.88 +1.0
3,060,378 + CA264_13115 0.88 +1.0
3,060,378 + CA264_13115 0.88 +0.6
3,060,379 - CA264_13115 0.88 -0.5
3,060,654 + -0.4
3,060,661 + -0.7
3,060,677 - +0.8
3,060,681 - +0.1
3,060,851 - CA264_13120 0.69 +1.0
3,060,940 - -1.6
3,061,062 + -3.1
3,061,062 + -1.0
3,061,062 + -2.8
3,061,128 + CA264_13125 0.18 -1.6
3,061,139 - CA264_13125 0.20 -0.7
3,061,182 - CA264_13125 0.27 +0.8
3,061,216 - CA264_13125 0.33 -1.5
3,061,256 + CA264_13125 0.40 -2.2
3,061,262 + CA264_13125 0.41 -1.6
3,061,262 + CA264_13125 0.41 -0.0
3,061,340 - CA264_13125 0.55 -0.6
3,061,347 + CA264_13125 0.56 -1.3
3,061,458 - CA264_13125 0.76 -0.0
3,061,460 + CA264_13125 0.76 -2.0
3,061,460 + CA264_13125 0.76 +1.0
3,061,464 + CA264_13125 0.77 -2.0
3,061,464 + CA264_13125 0.77 -1.3
3,061,465 - CA264_13125 0.77 +1.0
3,061,506 - CA264_13125 0.84 -3.1
3,061,538 + CA264_13125 0.90 -1.5
3,061,593 + -0.0
3,061,596 - -0.3
3,061,596 - +0.4
3,061,596 - +0.7
3,061,605 - -0.5
3,061,609 + -0.6
3,061,651 + -1.2
3,061,651 + +0.9
3,061,660 + -0.0
3,061,670 + +0.4
3,061,678 + -0.7
3,061,818 - CA264_13130 0.16 -0.6
3,061,985 + CA264_13130 0.31 -0.3
3,062,017 + CA264_13130 0.34 +0.8
3,062,018 - CA264_13130 0.35 +0.4
3,062,082 + CA264_13130 0.40 +0.3
3,062,163 - CA264_13130 0.48 +0.7
3,062,245 + CA264_13130 0.55 +0.6
3,062,320 + CA264_13130 0.62 +0.4
3,062,320 + CA264_13130 0.62 +2.0
3,062,321 - CA264_13130 0.62 +2.6
3,062,321 - CA264_13130 0.62 -0.7
3,062,597 + CA264_13130 0.88 +0.2
3,062,597 + CA264_13130 0.88 +0.9

Or see this region's nucleotide sequence