Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13090

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13085 and CA264_13090 are separated by 92 nucleotidesCA264_13090 and CA264_13095 are separated by 171 nucleotides CA264_13085: CA264_13085 - methylmalonyl-CoA carboxyltransferase, at 3,050,953 to 3,052,512 _13085 CA264_13090: CA264_13090 - peptidase M42, at 3,052,605 to 3,053,675 _13090 CA264_13095: CA264_13095 - cobalamin-binding protein, at 3,053,847 to 3,054,620 _13095 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -2 -1 0 1 2at 3051.677 kb on - strand, within CA264_13085at 3051.698 kb on - strand, within CA264_13085at 3051.809 kb on - strand, within CA264_13085at 3051.928 kb on - strand, within CA264_13085at 3051.932 kb on + strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3051.933 kb on - strand, within CA264_13085at 3052.020 kb on + strand, within CA264_13085at 3052.020 kb on + strand, within CA264_13085at 3052.171 kb on + strand, within CA264_13085at 3052.287 kb on + strand, within CA264_13085at 3052.372 kb on + strandat 3052.449 kb on + strandat 3052.450 kb on - strandat 3052.486 kb on - strandat 3052.516 kb on + strandat 3052.520 kb on + strandat 3052.520 kb on + strandat 3052.521 kb on - strandat 3052.521 kb on - strandat 3052.527 kb on + strandat 3052.571 kb on - strandat 3052.571 kb on - strandat 3052.698 kb on + strandat 3052.710 kb on + strandat 3052.737 kb on + strand, within CA264_13090at 3052.776 kb on + strand, within CA264_13090at 3052.778 kb on + strand, within CA264_13090at 3052.778 kb on + strand, within CA264_13090at 3052.779 kb on - strand, within CA264_13090at 3052.783 kb on + strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.784 kb on - strand, within CA264_13090at 3052.828 kb on - strand, within CA264_13090at 3052.828 kb on - strand, within CA264_13090at 3052.845 kb on + strand, within CA264_13090at 3052.846 kb on - strand, within CA264_13090at 3053.042 kb on - strand, within CA264_13090at 3053.042 kb on - strand, within CA264_13090at 3053.071 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.112 kb on + strand, within CA264_13090at 3053.115 kb on + strand, within CA264_13090at 3053.115 kb on + strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.116 kb on - strand, within CA264_13090at 3053.214 kb on + strand, within CA264_13090at 3053.215 kb on - strand, within CA264_13090at 3053.215 kb on - strand, within CA264_13090at 3053.222 kb on - strand, within CA264_13090at 3053.308 kb on + strand, within CA264_13090at 3053.560 kb on - strand, within CA264_13090at 3053.699 kb on + strandat 3053.700 kb on - strandat 3053.805 kb on - strandat 3053.805 kb on - strandat 3053.805 kb on - strandat 3053.812 kb on - strandat 3053.827 kb on + strandat 3053.828 kb on - strandat 3053.828 kb on - strandat 3053.836 kb on - strandat 3053.896 kb on + strandat 3054.088 kb on - strand, within CA264_13095at 3054.088 kb on - strand, within CA264_13095at 3054.140 kb on + strand, within CA264_13095at 3054.144 kb on + strand, within CA264_13095at 3054.144 kb on + strand, within CA264_13095at 3054.146 kb on + strand, within CA264_13095at 3054.146 kb on + strand, within CA264_13095at 3054.147 kb on - strand, within CA264_13095at 3054.147 kb on - strand, within CA264_13095at 3054.230 kb on + strand, within CA264_13095at 3054.230 kb on + strand, within CA264_13095at 3054.230 kb on + strand, within CA264_13095at 3054.231 kb on - strand, within CA264_13095at 3054.232 kb on + strand, within CA264_13095at 3054.233 kb on - strand, within CA264_13095at 3054.233 kb on - strand, within CA264_13095at 3054.274 kb on + strand, within CA264_13095at 3054.285 kb on + strand, within CA264_13095at 3054.285 kb on + strand, within CA264_13095at 3054.307 kb on - strand, within CA264_13095at 3054.307 kb on - strand, within CA264_13095at 3054.307 kb on - strand, within CA264_13095at 3054.307 kb on - strand, within CA264_13095at 3054.341 kb on + strand, within CA264_13095at 3054.343 kb on + strand, within CA264_13095at 3054.343 kb on + strand, within CA264_13095at 3054.343 kb on + strand, within CA264_13095at 3054.343 kb on + strand, within CA264_13095at 3054.344 kb on - strand, within CA264_13095at 3054.344 kb on - strand, within CA264_13095at 3054.344 kb on - strand, within CA264_13095at 3054.344 kb on - strand, within CA264_13095at 3054.344 kb on - strand, within CA264_13095at 3054.459 kb on + strand, within CA264_13095at 3054.566 kb on - strandat 3054.618 kb on + strandat 3054.618 kb on + strandat 3054.618 kb on + strandat 3054.638 kb on + strandat 3054.638 kb on + strandat 3054.638 kb on + strandat 3054.639 kb on - strandat 3054.639 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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3,051,677 - CA264_13085 0.46 +0.9
3,051,698 - CA264_13085 0.48 +0.0
3,051,809 - CA264_13085 0.55 +0.1
3,051,928 - CA264_13085 0.62 +0.5
3,051,932 + CA264_13085 0.63 -0.6
3,051,933 - CA264_13085 0.63 +2.3
3,051,933 - CA264_13085 0.63 +0.2
3,051,933 - CA264_13085 0.63 -1.6
3,052,020 + CA264_13085 0.68 +0.0
3,052,020 + CA264_13085 0.68 -0.1
3,052,171 + CA264_13085 0.78 +1.0
3,052,287 + CA264_13085 0.86 +0.5
3,052,372 + +1.2
3,052,449 + +0.0
3,052,450 - +1.0
3,052,486 - +1.1
3,052,516 + +0.2
3,052,520 + +0.1
3,052,520 + -0.2
3,052,521 - +2.1
3,052,521 - +1.0
3,052,527 + -0.1
3,052,571 - +0.7
3,052,571 - -0.3
3,052,698 + -0.5
3,052,710 + +0.4
3,052,737 + CA264_13090 0.12 +0.7
3,052,776 + CA264_13090 0.16 -1.6
3,052,778 + CA264_13090 0.16 -1.6
3,052,778 + CA264_13090 0.16 +0.5
3,052,779 - CA264_13090 0.16 +0.1
3,052,783 + CA264_13090 0.17 +0.3
3,052,784 - CA264_13090 0.17 +0.5
3,052,784 - CA264_13090 0.17 +0.1
3,052,784 - CA264_13090 0.17 -0.6
3,052,828 - CA264_13090 0.21 -0.8
3,052,828 - CA264_13090 0.21 +1.6
3,052,845 + CA264_13090 0.22 -0.1
3,052,846 - CA264_13090 0.23 -0.3
3,053,042 - CA264_13090 0.41 -0.2
3,053,042 - CA264_13090 0.41 -0.0
3,053,071 + CA264_13090 0.44 -0.4
3,053,112 + CA264_13090 0.47 +2.4
3,053,112 + CA264_13090 0.47 -1.2
3,053,112 + CA264_13090 0.47 +0.0
3,053,115 + CA264_13090 0.48 -1.0
3,053,115 + CA264_13090 0.48 -0.5
3,053,116 - CA264_13090 0.48 +0.8
3,053,116 - CA264_13090 0.48 +0.1
3,053,116 - CA264_13090 0.48 -2.0
3,053,116 - CA264_13090 0.48 +0.2
3,053,214 + CA264_13090 0.57 -0.0
3,053,215 - CA264_13090 0.57 +1.0
3,053,215 - CA264_13090 0.57 +0.6
3,053,222 - CA264_13090 0.58 -0.3
3,053,308 + CA264_13090 0.66 -0.5
3,053,560 - CA264_13090 0.89 +0.0
3,053,699 + +1.0
3,053,700 - +0.3
3,053,805 - +0.0
3,053,805 - +0.1
3,053,805 - -0.6
3,053,812 - +0.8
3,053,827 + +1.0
3,053,828 - -0.5
3,053,828 - -0.3
3,053,836 - -1.0
3,053,896 + -1.3
3,054,088 - CA264_13095 0.31 -0.2
3,054,088 - CA264_13095 0.31 -0.2
3,054,140 + CA264_13095 0.38 +0.8
3,054,144 + CA264_13095 0.38 +0.0
3,054,144 + CA264_13095 0.38 +0.8
3,054,146 + CA264_13095 0.39 +0.5
3,054,146 + CA264_13095 0.39 -0.5
3,054,147 - CA264_13095 0.39 +0.4
3,054,147 - CA264_13095 0.39 -0.7
3,054,230 + CA264_13095 0.49 -0.2
3,054,230 + CA264_13095 0.49 +0.2
3,054,230 + CA264_13095 0.49 +1.0
3,054,231 - CA264_13095 0.50 +0.6
3,054,232 + CA264_13095 0.50 +0.2
3,054,233 - CA264_13095 0.50 +1.0
3,054,233 - CA264_13095 0.50 +1.0
3,054,274 + CA264_13095 0.55 +1.4
3,054,285 + CA264_13095 0.57 -0.6
3,054,285 + CA264_13095 0.57 +1.4
3,054,307 - CA264_13095 0.59 -0.9
3,054,307 - CA264_13095 0.59 +0.5
3,054,307 - CA264_13095 0.59 +0.1
3,054,307 - CA264_13095 0.59 -0.2
3,054,341 + CA264_13095 0.64 +0.0
3,054,343 + CA264_13095 0.64 +0.2
3,054,343 + CA264_13095 0.64 -0.1
3,054,343 + CA264_13095 0.64 +0.2
3,054,343 + CA264_13095 0.64 -0.5
3,054,344 - CA264_13095 0.64 +0.7
3,054,344 - CA264_13095 0.64 -0.0
3,054,344 - CA264_13095 0.64 -0.5
3,054,344 - CA264_13095 0.64 +0.0
3,054,344 - CA264_13095 0.64 -0.2
3,054,459 + CA264_13095 0.79 -1.0
3,054,566 - +0.8
3,054,618 + +0.2
3,054,618 + +0.6
3,054,618 + +0.4
3,054,638 + -0.3
3,054,638 + +0.2
3,054,638 + +1.0
3,054,639 - -0.8
3,054,639 - +0.5

Or see this region's nucleotide sequence