Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12605

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12600 and CA264_12605 are separated by 163 nucleotidesCA264_12605 and CA264_12610 are separated by 328 nucleotides CA264_12600: CA264_12600 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 2,940,155 to 2,941,285 _12600 CA264_12605: CA264_12605 - stress protection protein MarC, at 2,941,449 to 2,942,069 _12605 CA264_12610: CA264_12610 - hypothetical protein, at 2,942,398 to 2,943,756 _12610 Position (kb) 2941 2942 2943Strain fitness (log2 ratio) -2 -1 0 1 2at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.451 kb on + strand, within CA264_12600at 2940.452 kb on - strand, within CA264_12600at 2940.454 kb on - strand, within CA264_12600at 2940.484 kb on + strand, within CA264_12600at 2940.509 kb on + strand, within CA264_12600at 2940.589 kb on + strand, within CA264_12600at 2940.599 kb on + strand, within CA264_12600at 2940.621 kb on + strand, within CA264_12600at 2940.687 kb on - strand, within CA264_12600at 2940.896 kb on + strand, within CA264_12600at 2940.897 kb on - strand, within CA264_12600at 2940.897 kb on - strand, within CA264_12600at 2940.955 kb on - strand, within CA264_12600at 2941.107 kb on + strand, within CA264_12600at 2941.108 kb on - strand, within CA264_12600at 2941.141 kb on - strand, within CA264_12600at 2941.271 kb on + strandat 2941.271 kb on + strandat 2941.359 kb on + strandat 2941.360 kb on - strandat 2941.360 kb on - strandat 2941.362 kb on + strandat 2941.410 kb on - strandat 2941.414 kb on - strandat 2941.440 kb on + strandat 2941.458 kb on - strandat 2941.458 kb on - strandat 2941.582 kb on + strand, within CA264_12605at 2941.582 kb on + strand, within CA264_12605at 2941.584 kb on + strand, within CA264_12605at 2941.585 kb on - strand, within CA264_12605at 2941.585 kb on - strand, within CA264_12605at 2941.626 kb on + strand, within CA264_12605at 2941.627 kb on - strand, within CA264_12605at 2941.838 kb on + strand, within CA264_12605at 2941.840 kb on + strand, within CA264_12605at 2941.841 kb on - strand, within CA264_12605at 2941.900 kb on + strand, within CA264_12605at 2941.900 kb on + strand, within CA264_12605at 2941.901 kb on - strand, within CA264_12605at 2941.920 kb on + strand, within CA264_12605at 2941.949 kb on + strand, within CA264_12605at 2942.003 kb on + strand, within CA264_12605at 2942.129 kb on + strandat 2942.130 kb on - strandat 2942.132 kb on + strandat 2942.132 kb on + strandat 2942.133 kb on - strandat 2942.133 kb on - strandat 2942.144 kb on + strandat 2942.144 kb on + strandat 2942.149 kb on + strandat 2942.150 kb on - strandat 2942.152 kb on + strandat 2942.262 kb on + strandat 2942.289 kb on + strandat 2942.344 kb on + strandat 2942.344 kb on + strandat 2942.344 kb on + strandat 2942.344 kb on + strandat 2942.345 kb on - strandat 2942.346 kb on + strandat 2942.352 kb on + strandat 2942.352 kb on + strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.353 kb on - strandat 2942.354 kb on + strandat 2942.354 kb on + strandat 2942.354 kb on + strandat 2942.354 kb on + strandat 2942.354 kb on + strandat 2942.355 kb on - strandat 2942.355 kb on - strandat 2942.355 kb on - strandat 2942.355 kb on - strandat 2942.372 kb on - strandat 2942.386 kb on - strandat 2942.411 kb on + strandat 2942.548 kb on + strand, within CA264_12610at 2942.549 kb on - strand, within CA264_12610at 2942.549 kb on - strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.575 kb on + strand, within CA264_12610at 2942.576 kb on - strand, within CA264_12610at 2942.577 kb on + strand, within CA264_12610at 2942.582 kb on + strand, within CA264_12610at 2942.675 kb on - strand, within CA264_12610at 2942.914 kb on + strand, within CA264_12610at 2942.953 kb on + strand, within CA264_12610at 2942.954 kb on - strand, within CA264_12610at 2943.007 kb on + strand, within CA264_12610at 2943.041 kb on - strand, within CA264_12610at 2943.052 kb on + strand, within CA264_12610

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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2,940,451 + CA264_12600 0.26 -2.3
2,940,451 + CA264_12600 0.26 +2.0
2,940,451 + CA264_12600 0.26 -0.3
2,940,451 + CA264_12600 0.26 -0.3
2,940,452 - CA264_12600 0.26 -0.4
2,940,454 - CA264_12600 0.26 +0.6
2,940,484 + CA264_12600 0.29 -0.8
2,940,509 + CA264_12600 0.31 -1.3
2,940,589 + CA264_12600 0.38 -0.6
2,940,599 + CA264_12600 0.39 -2.2
2,940,621 + CA264_12600 0.41 -0.1
2,940,687 - CA264_12600 0.47 -0.6
2,940,896 + CA264_12600 0.66 -0.6
2,940,897 - CA264_12600 0.66 +1.0
2,940,897 - CA264_12600 0.66 +0.2
2,940,955 - CA264_12600 0.71 -0.6
2,941,107 + CA264_12600 0.84 -0.7
2,941,108 - CA264_12600 0.84 +0.8
2,941,141 - CA264_12600 0.87 -0.3
2,941,271 + -0.2
2,941,271 + -0.1
2,941,359 + +0.6
2,941,360 - +0.4
2,941,360 - +0.9
2,941,362 + -0.6
2,941,410 - +0.5
2,941,414 - +0.8
2,941,440 + -0.5
2,941,458 - -0.3
2,941,458 - -1.0
2,941,582 + CA264_12605 0.21 -0.4
2,941,582 + CA264_12605 0.21 -0.1
2,941,584 + CA264_12605 0.22 -0.1
2,941,585 - CA264_12605 0.22 -0.0
2,941,585 - CA264_12605 0.22 -2.5
2,941,626 + CA264_12605 0.29 +0.5
2,941,627 - CA264_12605 0.29 +0.9
2,941,838 + CA264_12605 0.63 -0.6
2,941,840 + CA264_12605 0.63 -0.0
2,941,841 - CA264_12605 0.63 +0.6
2,941,900 + CA264_12605 0.73 -0.3
2,941,900 + CA264_12605 0.73 -1.0
2,941,901 - CA264_12605 0.73 +0.4
2,941,920 + CA264_12605 0.76 +0.4
2,941,949 + CA264_12605 0.81 +0.1
2,942,003 + CA264_12605 0.89 -0.0
2,942,129 + +2.3
2,942,130 - -0.7
2,942,132 + -0.0
2,942,132 + -1.3
2,942,133 - -0.3
2,942,133 - +0.3
2,942,144 + -0.4
2,942,144 + +0.4
2,942,149 + +0.1
2,942,150 - +0.0
2,942,152 + -0.5
2,942,262 + -0.4
2,942,289 + -1.3
2,942,344 + -0.4
2,942,344 + +0.1
2,942,344 + -1.2
2,942,344 + -1.0
2,942,345 - -0.8
2,942,346 + +0.8
2,942,352 + +2.0
2,942,352 + -1.3
2,942,353 - +0.3
2,942,353 - +0.4
2,942,353 - -1.6
2,942,353 - +0.2
2,942,353 - -0.3
2,942,353 - -0.2
2,942,353 - -0.6
2,942,354 + +2.0
2,942,354 + -0.2
2,942,354 + +0.1
2,942,354 + -0.2
2,942,354 + +0.3
2,942,355 - -0.0
2,942,355 - +0.4
2,942,355 - +1.0
2,942,355 - -1.1
2,942,372 - -0.3
2,942,386 - -0.4
2,942,411 + +0.3
2,942,548 + CA264_12610 0.11 -0.1
2,942,549 - CA264_12610 0.11 -0.3
2,942,549 - CA264_12610 0.11 +1.7
2,942,575 + CA264_12610 0.13 -1.6
2,942,575 + CA264_12610 0.13 -0.2
2,942,575 + CA264_12610 0.13 -0.3
2,942,575 + CA264_12610 0.13 +0.3
2,942,575 + CA264_12610 0.13 +0.1
2,942,575 + CA264_12610 0.13 -0.0
2,942,576 - CA264_12610 0.13 +0.3
2,942,577 + CA264_12610 0.13 -0.5
2,942,582 + CA264_12610 0.14 -0.1
2,942,675 - CA264_12610 0.20 +0.0
2,942,914 + CA264_12610 0.38 +0.3
2,942,953 + CA264_12610 0.41 +0.8
2,942,954 - CA264_12610 0.41 -0.3
2,943,007 + CA264_12610 0.45 +1.4
2,943,041 - CA264_12610 0.47 -0.7
2,943,052 + CA264_12610 0.48 +0.0

Or see this region's nucleotide sequence