Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12140

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12135 and CA264_12140 are separated by 60 nucleotidesCA264_12140 and CA264_12145 are separated by 37 nucleotides CA264_12135: CA264_12135 - L-iditol 2-dehydrogenase, at 2,829,763 to 2,830,716 _12135 CA264_12140: CA264_12140 - NAD-dependent dehydratase, at 2,830,777 to 2,832,837 _12140 CA264_12145: CA264_12145 - nucleoside-diphosphate-sugar epimerase, at 2,832,875 to 2,833,993 _12145 Position (kb) 2830 2831 2832 2833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2829.858 kb on - strandat 2829.910 kb on + strand, within CA264_12135at 2829.919 kb on - strand, within CA264_12135at 2829.919 kb on - strand, within CA264_12135at 2830.300 kb on + strand, within CA264_12135at 2830.455 kb on - strand, within CA264_12135at 2830.773 kb on + strandat 2830.797 kb on + strandat 2830.958 kb on + strandat 2830.959 kb on - strandat 2830.962 kb on - strandat 2831.313 kb on - strand, within CA264_12140at 2831.336 kb on + strand, within CA264_12140at 2831.408 kb on + strand, within CA264_12140at 2831.409 kb on - strand, within CA264_12140at 2831.483 kb on + strand, within CA264_12140at 2831.701 kb on + strand, within CA264_12140at 2831.881 kb on + strand, within CA264_12140at 2831.897 kb on + strand, within CA264_12140at 2832.282 kb on - strand, within CA264_12140at 2832.440 kb on + strand, within CA264_12140at 2832.579 kb on + strand, within CA264_12140at 2832.579 kb on + strand, within CA264_12140at 2832.596 kb on - strand, within CA264_12140at 2832.617 kb on - strand, within CA264_12140at 2832.781 kb on + strandat 2833.140 kb on + strand, within CA264_12145at 2833.140 kb on + strand, within CA264_12145at 2833.323 kb on + strand, within CA264_12145at 2833.446 kb on + strand, within CA264_12145at 2833.596 kb on + strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145at 2833.768 kb on - strand, within CA264_12145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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2,829,858 - -2.2
2,829,910 + CA264_12135 0.15 -1.2
2,829,919 - CA264_12135 0.16 -2.8
2,829,919 - CA264_12135 0.16 -2.6
2,830,300 + CA264_12135 0.56 -2.0
2,830,455 - CA264_12135 0.73 -2.6
2,830,773 + +1.0
2,830,797 + -2.3
2,830,958 + -4.7
2,830,959 - -3.5
2,830,962 - -2.1
2,831,313 - CA264_12140 0.26 -3.3
2,831,336 + CA264_12140 0.27 -2.4
2,831,408 + CA264_12140 0.31 -0.7
2,831,409 - CA264_12140 0.31 -3.4
2,831,483 + CA264_12140 0.34 -2.5
2,831,701 + CA264_12140 0.45 -1.8
2,831,881 + CA264_12140 0.54 -1.8
2,831,897 + CA264_12140 0.54 -1.4
2,832,282 - CA264_12140 0.73 -2.0
2,832,440 + CA264_12140 0.81 -0.4
2,832,579 + CA264_12140 0.87 -1.4
2,832,579 + CA264_12140 0.87 -0.1
2,832,596 - CA264_12140 0.88 -2.0
2,832,617 - CA264_12140 0.89 -1.8
2,832,781 + -2.7
2,833,140 + CA264_12145 0.24 -4.2
2,833,140 + CA264_12145 0.24 -3.6
2,833,323 + CA264_12145 0.40 -2.1
2,833,446 + CA264_12145 0.51 -0.0
2,833,596 + CA264_12145 0.64 -1.0
2,833,768 - CA264_12145 0.80 -3.0
2,833,768 - CA264_12145 0.80 -1.6

Or see this region's nucleotide sequence