Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12135
Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. Carbenicillin 0.0004 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,829,000 | + | CA264_12130 | 0.28 | +1.0 | |
2,829,001 | - | CA264_12130 | 0.28 | -0.5 | |
2,829,046 | + | CA264_12130 | 0.32 | +1.0 | |
2,829,071 | + | CA264_12130 | 0.34 | -1.8 | |
2,829,075 | - | CA264_12130 | 0.35 | -1.8 | |
2,829,262 | + | CA264_12130 | 0.53 | -2.6 | |
2,829,262 | + | CA264_12130 | 0.53 | -0.0 | |
2,829,298 | + | CA264_12130 | 0.56 | -0.9 | |
2,829,299 | - | CA264_12130 | 0.56 | -4.0 | |
2,829,607 | + | CA264_12130 | 0.85 | -2.0 | |
2,829,669 | + | -2.0 | |||
2,829,772 | + | -1.4 | |||
2,829,858 | - | -2.2 | |||
2,829,910 | + | CA264_12135 | 0.15 | -1.2 | |
2,829,919 | - | CA264_12135 | 0.16 | -2.8 | |
2,829,919 | - | CA264_12135 | 0.16 | -2.6 | |
2,830,300 | + | CA264_12135 | 0.56 | -2.0 | |
2,830,455 | - | CA264_12135 | 0.73 | -2.6 | |
2,830,773 | + | +1.0 | |||
2,830,797 | + | -2.3 | |||
2,830,958 | + | -4.7 | |||
2,830,959 | - | -3.5 | |||
2,830,962 | - | -2.1 | |||
2,831,313 | - | CA264_12140 | 0.26 | -3.3 | |
2,831,336 | + | CA264_12140 | 0.27 | -2.4 | |
2,831,408 | + | CA264_12140 | 0.31 | -0.7 | |
2,831,409 | - | CA264_12140 | 0.31 | -3.4 | |
2,831,483 | + | CA264_12140 | 0.34 | -2.5 | |
2,831,701 | + | CA264_12140 | 0.45 | -1.8 |
Or see this region's nucleotide sequence