Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11125

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11120 and CA264_11125 are separated by 266 nucleotidesCA264_11125 and CA264_11130 are separated by 257 nucleotides CA264_11120: CA264_11120 - universal stress protein UspA, at 2,566,991 to 2,567,845 _11120 CA264_11125: CA264_11125 - bifunctional alpha,alpha-trehalose-phosphate synthase (UDP-forming)/trehalose-phosphatase, at 2,568,112 to 2,570,328 _11125 CA264_11130: CA264_11130 - mechanosensitive ion channel protein MscS, at 2,570,586 to 2,571,674 _11130 Position (kb) 2568 2569 2570 2571Strain fitness (log2 ratio) -2 -1 0 1 2at 2567.124 kb on - strand, within CA264_11120at 2567.144 kb on + strand, within CA264_11120at 2567.352 kb on + strand, within CA264_11120at 2567.353 kb on - strand, within CA264_11120at 2567.353 kb on - strand, within CA264_11120at 2567.517 kb on + strand, within CA264_11120at 2567.571 kb on - strand, within CA264_11120at 2567.571 kb on - strand, within CA264_11120at 2567.578 kb on - strand, within CA264_11120at 2567.633 kb on - strand, within CA264_11120at 2567.778 kb on + strandat 2567.778 kb on + strandat 2567.778 kb on + strandat 2567.779 kb on - strandat 2567.787 kb on + strandat 2567.788 kb on - strandat 2567.832 kb on - strandat 2567.885 kb on + strandat 2567.886 kb on - strandat 2567.887 kb on + strandat 2567.898 kb on + strandat 2567.899 kb on - strandat 2567.901 kb on + strandat 2567.902 kb on - strandat 2567.905 kb on + strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.906 kb on - strandat 2567.918 kb on - strandat 2568.045 kb on + strandat 2568.054 kb on + strandat 2568.098 kb on + strandat 2568.100 kb on + strandat 2568.203 kb on - strandat 2568.209 kb on + strandat 2568.241 kb on + strandat 2568.246 kb on + strandat 2568.249 kb on - strandat 2568.271 kb on - strandat 2568.403 kb on + strand, within CA264_11125at 2568.404 kb on - strand, within CA264_11125at 2568.404 kb on - strand, within CA264_11125at 2568.423 kb on + strand, within CA264_11125at 2568.424 kb on - strand, within CA264_11125at 2568.532 kb on - strand, within CA264_11125at 2568.532 kb on - strand, within CA264_11125at 2568.742 kb on - strand, within CA264_11125at 2568.897 kb on + strand, within CA264_11125at 2568.897 kb on + strand, within CA264_11125at 2568.897 kb on + strand, within CA264_11125at 2568.985 kb on + strand, within CA264_11125at 2568.985 kb on + strand, within CA264_11125at 2568.986 kb on - strand, within CA264_11125at 2569.065 kb on - strand, within CA264_11125at 2569.153 kb on + strand, within CA264_11125at 2569.153 kb on + strand, within CA264_11125at 2569.154 kb on - strand, within CA264_11125at 2569.240 kb on + strand, within CA264_11125at 2569.283 kb on + strand, within CA264_11125at 2569.298 kb on + strand, within CA264_11125at 2569.332 kb on + strand, within CA264_11125at 2569.430 kb on - strand, within CA264_11125at 2569.608 kb on - strand, within CA264_11125at 2569.616 kb on + strand, within CA264_11125at 2569.739 kb on + strand, within CA264_11125at 2569.739 kb on + strand, within CA264_11125at 2569.754 kb on - strand, within CA264_11125at 2569.820 kb on + strand, within CA264_11125at 2569.820 kb on + strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.031 kb on - strand, within CA264_11125at 2570.083 kb on + strand, within CA264_11125at 2570.084 kb on - strand, within CA264_11125at 2570.195 kb on - strandat 2570.214 kb on - strandat 2570.256 kb on + strandat 2570.256 kb on + strandat 2570.257 kb on - strandat 2570.258 kb on + strandat 2570.296 kb on + strandat 2570.297 kb on - strandat 2570.449 kb on - strandat 2570.453 kb on - strandat 2570.453 kb on - strandat 2570.476 kb on - strandat 2570.476 kb on - strandat 2570.491 kb on - strandat 2570.599 kb on + strandat 2570.665 kb on + strandat 2570.675 kb on - strandat 2570.679 kb on - strandat 2570.679 kb on - strandat 2570.801 kb on + strand, within CA264_11130at 2570.824 kb on - strand, within CA264_11130at 2570.877 kb on - strand, within CA264_11130at 2570.877 kb on - strand, within CA264_11130at 2570.936 kb on + strand, within CA264_11130at 2570.936 kb on + strand, within CA264_11130at 2570.937 kb on - strand, within CA264_11130at 2570.952 kb on - strand, within CA264_11130at 2570.965 kb on + strand, within CA264_11130at 2570.965 kb on + strand, within CA264_11130at 2570.966 kb on - strand, within CA264_11130at 2570.966 kb on - strand, within CA264_11130at 2571.012 kb on - strand, within CA264_11130at 2571.021 kb on - strand, within CA264_11130at 2571.021 kb on - strand, within CA264_11130at 2571.033 kb on - strand, within CA264_11130at 2571.121 kb on + strand, within CA264_11130at 2571.124 kb on + strand, within CA264_11130at 2571.258 kb on + strand, within CA264_11130at 2571.258 kb on + strand, within CA264_11130at 2571.259 kb on - strand, within CA264_11130at 2571.309 kb on + strand, within CA264_11130at 2571.310 kb on - strand, within CA264_11130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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2,567,124 - CA264_11120 0.16 -0.0
2,567,144 + CA264_11120 0.18 +0.4
2,567,352 + CA264_11120 0.42 +0.2
2,567,353 - CA264_11120 0.42 +0.6
2,567,353 - CA264_11120 0.42 +0.6
2,567,517 + CA264_11120 0.62 +0.7
2,567,571 - CA264_11120 0.68 -2.7
2,567,571 - CA264_11120 0.68 -0.2
2,567,578 - CA264_11120 0.69 -0.2
2,567,633 - CA264_11120 0.75 +0.1
2,567,778 + +1.7
2,567,778 + -0.4
2,567,778 + +1.3
2,567,779 - +0.1
2,567,787 + -0.1
2,567,788 - -0.4
2,567,832 - -0.3
2,567,885 + +0.3
2,567,886 - +0.4
2,567,887 + +0.2
2,567,898 + +0.0
2,567,899 - -2.2
2,567,901 + +0.5
2,567,902 - +0.6
2,567,905 + +0.4
2,567,906 - -0.2
2,567,906 - +0.3
2,567,906 - +1.8
2,567,906 - +0.3
2,567,918 - +1.7
2,568,045 + -0.4
2,568,054 + -0.2
2,568,098 + +1.2
2,568,100 + -0.2
2,568,203 - +0.4
2,568,209 + +0.2
2,568,241 + +0.2
2,568,246 + -0.7
2,568,249 - +0.5
2,568,271 - -0.4
2,568,403 + CA264_11125 0.13 +0.1
2,568,404 - CA264_11125 0.13 +0.3
2,568,404 - CA264_11125 0.13 -0.4
2,568,423 + CA264_11125 0.14 -0.5
2,568,424 - CA264_11125 0.14 -1.2
2,568,532 - CA264_11125 0.19 +1.8
2,568,532 - CA264_11125 0.19 +0.5
2,568,742 - CA264_11125 0.28 +1.1
2,568,897 + CA264_11125 0.35 -0.7
2,568,897 + CA264_11125 0.35 +0.4
2,568,897 + CA264_11125 0.35 +0.8
2,568,985 + CA264_11125 0.39 +0.6
2,568,985 + CA264_11125 0.39 +0.6
2,568,986 - CA264_11125 0.39 +0.3
2,569,065 - CA264_11125 0.43 +0.4
2,569,153 + CA264_11125 0.47 -0.6
2,569,153 + CA264_11125 0.47 +0.6
2,569,154 - CA264_11125 0.47 -0.2
2,569,240 + CA264_11125 0.51 -0.2
2,569,283 + CA264_11125 0.53 -0.1
2,569,298 + CA264_11125 0.53 +0.5
2,569,332 + CA264_11125 0.55 -0.8
2,569,430 - CA264_11125 0.59 -0.0
2,569,608 - CA264_11125 0.67 -0.9
2,569,616 + CA264_11125 0.68 -1.2
2,569,739 + CA264_11125 0.73 +0.3
2,569,739 + CA264_11125 0.73 +0.3
2,569,754 - CA264_11125 0.74 +0.0
2,569,820 + CA264_11125 0.77 -0.3
2,569,820 + CA264_11125 0.77 +1.0
2,570,031 - CA264_11125 0.87 -0.5
2,570,031 - CA264_11125 0.87 +0.3
2,570,031 - CA264_11125 0.87 +0.1
2,570,083 + CA264_11125 0.89 +1.3
2,570,084 - CA264_11125 0.89 +0.5
2,570,195 - +0.3
2,570,214 - +0.8
2,570,256 + +0.0
2,570,256 + +0.3
2,570,257 - +0.7
2,570,258 + -2.4
2,570,296 + -0.4
2,570,297 - +0.2
2,570,449 - -0.3
2,570,453 - +0.5
2,570,453 - +1.4
2,570,476 - -0.2
2,570,476 - +0.1
2,570,491 - +1.4
2,570,599 + -0.7
2,570,665 + -0.5
2,570,675 - -1.3
2,570,679 - +0.6
2,570,679 - -0.6
2,570,801 + CA264_11130 0.20 -1.6
2,570,824 - CA264_11130 0.22 +0.5
2,570,877 - CA264_11130 0.27 +2.4
2,570,877 - CA264_11130 0.27 -0.8
2,570,936 + CA264_11130 0.32 -0.4
2,570,936 + CA264_11130 0.32 -1.7
2,570,937 - CA264_11130 0.32 -0.7
2,570,952 - CA264_11130 0.34 -0.4
2,570,965 + CA264_11130 0.35 -0.7
2,570,965 + CA264_11130 0.35 -0.4
2,570,966 - CA264_11130 0.35 +1.3
2,570,966 - CA264_11130 0.35 -0.9
2,571,012 - CA264_11130 0.39 -0.6
2,571,021 - CA264_11130 0.40 +0.3
2,571,021 - CA264_11130 0.40 -1.9
2,571,033 - CA264_11130 0.41 -0.7
2,571,121 + CA264_11130 0.49 -1.2
2,571,124 + CA264_11130 0.49 -2.0
2,571,258 + CA264_11130 0.62 -0.4
2,571,258 + CA264_11130 0.62 +0.1
2,571,259 - CA264_11130 0.62 -0.7
2,571,309 + CA264_11130 0.66 +0.6
2,571,310 - CA264_11130 0.66 +0.6

Or see this region's nucleotide sequence