Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10755 and CA264_10760 are separated by 267 nucleotides CA264_10760 and CA264_10765 overlap by 8 nucleotides CA264_10765 and CA264_10770 are separated by 70 nucleotides
CA264_10755: CA264_10755 - polyprenyl synthetase, at 2,486,097 to 2,487,074
_10755
CA264_10760: CA264_10760 - alpha/beta hydrolase, at 2,487,342 to 2,488,187
_10760
CA264_10765: CA264_10765 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 2,488,180 to 2,488,662
_10765
CA264_10770: CA264_10770 - N-acetyltransferase, at 2,488,733 to 2,489,278
_10770
Position (kb)
2487
2488
2489 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2487.051 kb on + strand at 2487.093 kb on + strand at 2487.094 kb on - strand at 2487.141 kb on + strand at 2487.164 kb on + strand at 2487.164 kb on + strand at 2487.165 kb on - strand at 2487.181 kb on + strand at 2487.182 kb on - strand at 2487.215 kb on + strand at 2487.216 kb on - strand at 2487.216 kb on - strand at 2487.261 kb on + strand at 2487.363 kb on + strand at 2487.364 kb on - strand at 2487.402 kb on + strand at 2487.541 kb on - strand, within CA264_10760 at 2487.802 kb on - strand, within CA264_10760 at 2487.807 kb on - strand, within CA264_10760 at 2487.858 kb on + strand, within CA264_10760 at 2487.859 kb on - strand, within CA264_10760 at 2487.859 kb on - strand, within CA264_10760 at 2487.882 kb on - strand, within CA264_10760 at 2487.897 kb on + strand, within CA264_10760 at 2487.918 kb on + strand, within CA264_10760 at 2487.918 kb on + strand, within CA264_10760 at 2488.110 kb on + strand at 2488.190 kb on + strand at 2488.190 kb on + strand at 2488.190 kb on + strand at 2488.191 kb on - strand at 2488.191 kb on - strand at 2488.712 kb on - strand at 2488.715 kb on - strand at 2488.722 kb on - strand at 2488.769 kb on + strand at 2488.770 kb on - strand at 2488.774 kb on - strand at 2488.774 kb on - strand at 2488.774 kb on - strand at 2488.788 kb on - strand, within CA264_10770 at 2488.816 kb on + strand, within CA264_10770 at 2488.817 kb on - strand, within CA264_10770 at 2488.841 kb on + strand, within CA264_10770 at 2488.841 kb on + strand, within CA264_10770 at 2488.842 kb on - strand, within CA264_10770 at 2488.846 kb on - strand, within CA264_10770 at 2488.846 kb on - strand, within CA264_10770 at 2488.860 kb on + strand, within CA264_10770 at 2488.888 kb on + strand, within CA264_10770 at 2488.888 kb on + strand, within CA264_10770 at 2488.889 kb on - strand, within CA264_10770 at 2488.889 kb on - strand, within CA264_10770 at 2488.891 kb on + strand, within CA264_10770 at 2488.892 kb on - strand, within CA264_10770 at 2488.905 kb on + strand, within CA264_10770
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 2,487,051 + +0.1 2,487,093 + -0.4 2,487,094 - +0.1 2,487,141 + -1.1 2,487,164 + +0.2 2,487,164 + +1.8 2,487,165 - -1.1 2,487,181 + -0.3 2,487,182 - -0.5 2,487,215 + -1.0 2,487,216 - +0.3 2,487,216 - -0.1 2,487,261 + -0.2 2,487,363 + +1.4 2,487,364 - +0.4 2,487,402 + -0.2 2,487,541 - CA264_10760 0.24 -0.5 2,487,802 - CA264_10760 0.54 -1.2 2,487,807 - CA264_10760 0.55 -2.3 2,487,858 + CA264_10760 0.61 -1.3 2,487,859 - CA264_10760 0.61 -1.3 2,487,859 - CA264_10760 0.61 +1.8 2,487,882 - CA264_10760 0.64 +0.1 2,487,897 + CA264_10760 0.66 -0.0 2,487,918 + CA264_10760 0.68 -0.8 2,487,918 + CA264_10760 0.68 +0.0 2,488,110 + -0.1 2,488,190 + +0.5 2,488,190 + +0.0 2,488,190 + +0.5 2,488,191 - +1.2 2,488,191 - -0.5 2,488,712 - -1.0 2,488,715 - -0.1 2,488,722 - -0.5 2,488,769 + -0.0 2,488,770 - +0.5 2,488,774 - +0.1 2,488,774 - -0.4 2,488,774 - +0.6 2,488,788 - CA264_10770 0.10 +0.6 2,488,816 + CA264_10770 0.15 -0.5 2,488,817 - CA264_10770 0.15 +0.9 2,488,841 + CA264_10770 0.20 +0.7 2,488,841 + CA264_10770 0.20 -0.5 2,488,842 - CA264_10770 0.20 +1.6 2,488,846 - CA264_10770 0.21 -0.0 2,488,846 - CA264_10770 0.21 +0.5 2,488,860 + CA264_10770 0.23 +0.5 2,488,888 + CA264_10770 0.28 +0.4 2,488,888 + CA264_10770 0.28 +1.0 2,488,889 - CA264_10770 0.29 +0.2 2,488,889 - CA264_10770 0.29 +0.6 2,488,891 + CA264_10770 0.29 -0.2 2,488,892 - CA264_10770 0.29 -0.8 2,488,905 + CA264_10770 0.32 +0.8
Or see this region's nucleotide sequence