Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10760

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10755 and CA264_10760 are separated by 267 nucleotidesCA264_10760 and CA264_10765 overlap by 8 nucleotidesCA264_10765 and CA264_10770 are separated by 70 nucleotides CA264_10755: CA264_10755 - polyprenyl synthetase, at 2,486,097 to 2,487,074 _10755 CA264_10760: CA264_10760 - alpha/beta hydrolase, at 2,487,342 to 2,488,187 _10760 CA264_10765: CA264_10765 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 2,488,180 to 2,488,662 _10765 CA264_10770: CA264_10770 - N-acetyltransferase, at 2,488,733 to 2,489,278 _10770 Position (kb) 2487 2488 2489Strain fitness (log2 ratio) -2 -1 0 1 2at 2487.051 kb on + strandat 2487.093 kb on + strandat 2487.094 kb on - strandat 2487.141 kb on + strandat 2487.164 kb on + strandat 2487.164 kb on + strandat 2487.165 kb on - strandat 2487.181 kb on + strandat 2487.182 kb on - strandat 2487.215 kb on + strandat 2487.216 kb on - strandat 2487.216 kb on - strandat 2487.261 kb on + strandat 2487.363 kb on + strandat 2487.364 kb on - strandat 2487.402 kb on + strandat 2487.541 kb on - strand, within CA264_10760at 2487.802 kb on - strand, within CA264_10760at 2487.807 kb on - strand, within CA264_10760at 2487.858 kb on + strand, within CA264_10760at 2487.859 kb on - strand, within CA264_10760at 2487.859 kb on - strand, within CA264_10760at 2487.882 kb on - strand, within CA264_10760at 2487.897 kb on + strand, within CA264_10760at 2487.918 kb on + strand, within CA264_10760at 2487.918 kb on + strand, within CA264_10760at 2488.110 kb on + strandat 2488.190 kb on + strandat 2488.190 kb on + strandat 2488.190 kb on + strandat 2488.191 kb on - strandat 2488.191 kb on - strandat 2488.712 kb on - strandat 2488.715 kb on - strandat 2488.722 kb on - strandat 2488.769 kb on + strandat 2488.770 kb on - strandat 2488.774 kb on - strandat 2488.774 kb on - strandat 2488.774 kb on - strandat 2488.788 kb on - strand, within CA264_10770at 2488.816 kb on + strand, within CA264_10770at 2488.817 kb on - strand, within CA264_10770at 2488.841 kb on + strand, within CA264_10770at 2488.841 kb on + strand, within CA264_10770at 2488.842 kb on - strand, within CA264_10770at 2488.846 kb on - strand, within CA264_10770at 2488.846 kb on - strand, within CA264_10770at 2488.860 kb on + strand, within CA264_10770at 2488.888 kb on + strand, within CA264_10770at 2488.888 kb on + strand, within CA264_10770at 2488.889 kb on - strand, within CA264_10770at 2488.889 kb on - strand, within CA264_10770at 2488.891 kb on + strand, within CA264_10770at 2488.892 kb on - strand, within CA264_10770at 2488.905 kb on + strand, within CA264_10770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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2,487,051 + +0.1
2,487,093 + -0.4
2,487,094 - +0.1
2,487,141 + -1.1
2,487,164 + +0.2
2,487,164 + +1.8
2,487,165 - -1.1
2,487,181 + -0.3
2,487,182 - -0.5
2,487,215 + -1.0
2,487,216 - +0.3
2,487,216 - -0.1
2,487,261 + -0.2
2,487,363 + +1.4
2,487,364 - +0.4
2,487,402 + -0.2
2,487,541 - CA264_10760 0.24 -0.5
2,487,802 - CA264_10760 0.54 -1.2
2,487,807 - CA264_10760 0.55 -2.3
2,487,858 + CA264_10760 0.61 -1.3
2,487,859 - CA264_10760 0.61 -1.3
2,487,859 - CA264_10760 0.61 +1.8
2,487,882 - CA264_10760 0.64 +0.1
2,487,897 + CA264_10760 0.66 -0.0
2,487,918 + CA264_10760 0.68 -0.8
2,487,918 + CA264_10760 0.68 +0.0
2,488,110 + -0.1
2,488,190 + +0.5
2,488,190 + +0.0
2,488,190 + +0.5
2,488,191 - +1.2
2,488,191 - -0.5
2,488,712 - -1.0
2,488,715 - -0.1
2,488,722 - -0.5
2,488,769 + -0.0
2,488,770 - +0.5
2,488,774 - +0.1
2,488,774 - -0.4
2,488,774 - +0.6
2,488,788 - CA264_10770 0.10 +0.6
2,488,816 + CA264_10770 0.15 -0.5
2,488,817 - CA264_10770 0.15 +0.9
2,488,841 + CA264_10770 0.20 +0.7
2,488,841 + CA264_10770 0.20 -0.5
2,488,842 - CA264_10770 0.20 +1.6
2,488,846 - CA264_10770 0.21 -0.0
2,488,846 - CA264_10770 0.21 +0.5
2,488,860 + CA264_10770 0.23 +0.5
2,488,888 + CA264_10770 0.28 +0.4
2,488,888 + CA264_10770 0.28 +1.0
2,488,889 - CA264_10770 0.29 +0.2
2,488,889 - CA264_10770 0.29 +0.6
2,488,891 + CA264_10770 0.29 -0.2
2,488,892 - CA264_10770 0.29 -0.8
2,488,905 + CA264_10770 0.32 +0.8

Or see this region's nucleotide sequence