Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09435 and CA264_09440 overlap by 1 nucleotides CA264_09440 and CA264_09445 overlap by 13 nucleotides CA264_09445 and CA264_09450 are separated by 150 nucleotides CA264_09450 and CA264_09455 are separated by 106 nucleotides
CA264_09435: CA264_09435 - 3-isopropylmalate dehydratase large subunit, at 2,205,117 to 2,206,511
_09435
CA264_09440: CA264_09440 - 3-isopropylmalate dehydratase small subunit, at 2,206,511 to 2,207,107
_09440
CA264_09445: CA264_09445 - 3-isopropylmalate dehydrogenase, at 2,207,095 to 2,208,216
_09445
CA264_09450: CA264_09450 - hypothetical protein, at 2,208,367 to 2,208,615
_09450
CA264_09455: CA264_09455 - LysR family transcriptional regulator, at 2,208,722 to 2,209,615
_09455
Position (kb)
2207
2208
2209 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2206.128 kb on + strand, within CA264_09435 at 2206.129 kb on - strand, within CA264_09435 at 2206.129 kb on - strand, within CA264_09435 at 2206.253 kb on - strand, within CA264_09435 at 2206.289 kb on - strand, within CA264_09435 at 2206.289 kb on - strand, within CA264_09435 at 2206.289 kb on - strand, within CA264_09435 at 2206.510 kb on - strand at 2206.571 kb on - strand, within CA264_09440 at 2206.582 kb on + strand, within CA264_09440 at 2206.583 kb on - strand, within CA264_09440 at 2206.583 kb on - strand, within CA264_09440 at 2206.583 kb on - strand, within CA264_09440 at 2206.584 kb on + strand, within CA264_09440 at 2206.584 kb on + strand, within CA264_09440 at 2206.652 kb on + strand, within CA264_09440 at 2206.703 kb on + strand, within CA264_09440 at 2206.870 kb on - strand, within CA264_09440 at 2206.930 kb on + strand, within CA264_09440 at 2206.935 kb on + strand, within CA264_09440 at 2206.935 kb on + strand, within CA264_09440 at 2206.936 kb on - strand, within CA264_09440 at 2207.003 kb on + strand, within CA264_09440 at 2207.003 kb on + strand, within CA264_09440 at 2207.004 kb on - strand, within CA264_09440 at 2207.078 kb on + strand at 2207.106 kb on - strand at 2207.338 kb on + strand, within CA264_09445 at 2207.346 kb on + strand, within CA264_09445 at 2207.437 kb on + strand, within CA264_09445 at 2207.550 kb on - strand, within CA264_09445 at 2207.578 kb on + strand, within CA264_09445 at 2207.578 kb on + strand, within CA264_09445 at 2207.603 kb on + strand, within CA264_09445 at 2207.657 kb on + strand, within CA264_09445 at 2207.735 kb on + strand, within CA264_09445 at 2207.736 kb on - strand, within CA264_09445 at 2207.805 kb on + strand, within CA264_09445 at 2208.067 kb on - strand, within CA264_09445 at 2208.078 kb on - strand, within CA264_09445 at 2208.090 kb on - strand, within CA264_09445 at 2208.090 kb on - strand, within CA264_09445 at 2208.090 kb on - strand, within CA264_09445 at 2208.126 kb on - strand at 2208.135 kb on + strand at 2208.164 kb on + strand at 2208.224 kb on + strand at 2208.322 kb on - strand at 2208.339 kb on - strand at 2208.385 kb on + strand at 2208.400 kb on + strand, within CA264_09450 at 2208.479 kb on - strand, within CA264_09450 at 2208.589 kb on + strand, within CA264_09450 at 2208.589 kb on + strand, within CA264_09450 at 2208.590 kb on - strand, within CA264_09450 at 2208.592 kb on - strand at 2208.592 kb on - strand at 2208.592 kb on - strand at 2208.654 kb on - strand at 2208.683 kb on - strand at 2208.720 kb on - strand at 2208.803 kb on - strand at 2208.960 kb on + strand, within CA264_09455 at 2208.961 kb on - strand, within CA264_09455 at 2208.961 kb on - strand, within CA264_09455 at 2208.976 kb on - strand, within CA264_09455 at 2208.976 kb on - strand, within CA264_09455 at 2208.995 kb on - strand, within CA264_09455 at 2209.021 kb on + strand, within CA264_09455 at 2209.028 kb on + strand, within CA264_09455 at 2209.036 kb on + strand, within CA264_09455 at 2209.036 kb on + strand, within CA264_09455 at 2209.037 kb on - strand, within CA264_09455 at 2209.054 kb on + strand, within CA264_09455 at 2209.057 kb on + strand, within CA264_09455 at 2209.057 kb on + strand, within CA264_09455 at 2209.057 kb on + strand, within CA264_09455 at 2209.057 kb on + strand, within CA264_09455 at 2209.057 kb on + strand, within CA264_09455 at 2209.058 kb on - strand, within CA264_09455 at 2209.058 kb on - strand, within CA264_09455 at 2209.058 kb on - strand, within CA264_09455 at 2209.080 kb on + strand, within CA264_09455 at 2209.081 kb on - strand at 2209.081 kb on - strand, within CA264_09455 at 2209.192 kb on + strand, within CA264_09455 at 2209.202 kb on + strand, within CA264_09455 at 2209.202 kb on + strand, within CA264_09455
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 2,206,128 + CA264_09435 0.72 -0.7 2,206,129 - CA264_09435 0.73 -0.4 2,206,129 - CA264_09435 0.73 +0.8 2,206,253 - CA264_09435 0.81 -0.5 2,206,289 - CA264_09435 0.84 +1.0 2,206,289 - CA264_09435 0.84 +0.9 2,206,289 - CA264_09435 0.84 -0.7 2,206,510 - -0.2 2,206,571 - CA264_09440 0.10 -0.6 2,206,582 + CA264_09440 0.12 -0.5 2,206,583 - CA264_09440 0.12 -0.0 2,206,583 - CA264_09440 0.12 -0.1 2,206,583 - CA264_09440 0.12 +1.8 2,206,584 + CA264_09440 0.12 +0.2 2,206,584 + CA264_09440 0.12 -0.4 2,206,652 + CA264_09440 0.24 +0.8 2,206,703 + CA264_09440 0.32 -0.2 2,206,870 - CA264_09440 0.60 +0.2 2,206,930 + CA264_09440 0.70 -0.1 2,206,935 + CA264_09440 0.71 +0.1 2,206,935 + CA264_09440 0.71 -0.2 2,206,936 - CA264_09440 0.71 -0.5 2,207,003 + CA264_09440 0.82 +0.0 2,207,003 + CA264_09440 0.82 -0.5 2,207,004 - CA264_09440 0.83 +0.2 2,207,078 + +0.3 2,207,106 - +1.0 2,207,338 + CA264_09445 0.22 +0.1 2,207,346 + CA264_09445 0.22 -0.2 2,207,437 + CA264_09445 0.30 -2.2 2,207,550 - CA264_09445 0.41 -0.2 2,207,578 + CA264_09445 0.43 +0.1 2,207,578 + CA264_09445 0.43 +0.2 2,207,603 + CA264_09445 0.45 +0.3 2,207,657 + CA264_09445 0.50 -0.2 2,207,735 + CA264_09445 0.57 -0.2 2,207,736 - CA264_09445 0.57 +0.8 2,207,805 + CA264_09445 0.63 +0.3 2,208,067 - CA264_09445 0.87 -0.5 2,208,078 - CA264_09445 0.88 +0.2 2,208,090 - CA264_09445 0.89 +1.4 2,208,090 - CA264_09445 0.89 -0.3 2,208,090 - CA264_09445 0.89 +0.1 2,208,126 - +0.5 2,208,135 + -0.8 2,208,164 + -1.8 2,208,224 + -0.7 2,208,322 - -0.5 2,208,339 - +0.6 2,208,385 + -0.6 2,208,400 + CA264_09450 0.13 +0.0 2,208,479 - CA264_09450 0.45 -1.4 2,208,589 + CA264_09450 0.89 -0.3 2,208,589 + CA264_09450 0.89 -1.2 2,208,590 - CA264_09450 0.90 +0.0 2,208,592 - +1.4 2,208,592 - +0.6 2,208,592 - -2.2 2,208,654 - -2.1 2,208,683 - -0.4 2,208,720 - -0.6 2,208,803 - -0.4 2,208,960 + CA264_09455 0.27 +0.1 2,208,961 - CA264_09455 0.27 +1.8 2,208,961 - CA264_09455 0.27 -0.2 2,208,976 - CA264_09455 0.28 +1.3 2,208,976 - CA264_09455 0.28 +0.8 2,208,995 - CA264_09455 0.31 +0.4 2,209,021 + CA264_09455 0.33 +0.1 2,209,028 + CA264_09455 0.34 -0.5 2,209,036 + CA264_09455 0.35 -0.1 2,209,036 + CA264_09455 0.35 -0.2 2,209,037 - CA264_09455 0.35 +2.8 2,209,054 + CA264_09455 0.37 +0.1 2,209,057 + CA264_09455 0.37 -0.4 2,209,057 + CA264_09455 0.37 -0.3 2,209,057 + CA264_09455 0.37 -1.2 2,209,057 + CA264_09455 0.37 +0.4 2,209,057 + CA264_09455 0.37 -0.6 2,209,058 - CA264_09455 0.38 +0.1 2,209,058 - CA264_09455 0.38 -0.4 2,209,058 - CA264_09455 0.38 -0.8 2,209,080 + CA264_09455 0.40 +0.0 2,209,081 - -1.2 2,209,081 - CA264_09455 0.40 +0.2 2,209,192 + CA264_09455 0.53 +1.4 2,209,202 + CA264_09455 0.54 -0.1 2,209,202 + CA264_09455 0.54 +0.5
Or see this region's nucleotide sequence