Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09335 and CA264_09340 are separated by 259 nucleotides CA264_09340 and CA264_09345 are separated by 147 nucleotides
CA264_09335: CA264_09335 - serine hydrolase, at 2,181,635 to 2,182,873
_09335
CA264_09340: CA264_09340 - hypothetical protein, at 2,183,133 to 2,183,531
_09340
CA264_09345: CA264_09345 - 4-hydroxyphenylpyruvate dioxygenase, at 2,183,679 to 2,184,773
_09345
Position (kb)
2183
2184 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2182.250 kb on - strand, within CA264_09335 at 2182.260 kb on + strand, within CA264_09335 at 2182.263 kb on + strand, within CA264_09335 at 2182.263 kb on + strand, within CA264_09335 at 2182.263 kb on + strand, within CA264_09335 at 2182.263 kb on + strand, within CA264_09335 at 2182.263 kb on + strand, within CA264_09335 at 2182.264 kb on - strand, within CA264_09335 at 2182.353 kb on + strand, within CA264_09335 at 2182.353 kb on + strand, within CA264_09335 at 2182.359 kb on + strand, within CA264_09335 at 2182.359 kb on + strand, within CA264_09335 at 2182.431 kb on + strand, within CA264_09335 at 2182.432 kb on - strand, within CA264_09335 at 2182.432 kb on - strand, within CA264_09335 at 2182.452 kb on + strand, within CA264_09335 at 2182.453 kb on - strand, within CA264_09335 at 2182.457 kb on - strand, within CA264_09335 at 2182.484 kb on - strand, within CA264_09335 at 2182.590 kb on + strand, within CA264_09335 at 2182.605 kb on + strand, within CA264_09335 at 2182.606 kb on - strand, within CA264_09335 at 2182.613 kb on - strand, within CA264_09335 at 2182.856 kb on + strand at 2182.857 kb on - strand at 2182.862 kb on - strand at 2182.874 kb on - strand at 2182.874 kb on - strand at 2182.885 kb on - strand at 2182.903 kb on + strand at 2182.929 kb on - strand at 2182.933 kb on + strand at 2182.938 kb on + strand at 2183.085 kb on + strand at 2183.308 kb on + strand, within CA264_09340 at 2183.308 kb on + strand, within CA264_09340 at 2183.309 kb on - strand, within CA264_09340 at 2183.309 kb on - strand, within CA264_09340 at 2183.309 kb on - strand, within CA264_09340 at 2183.309 kb on - strand, within CA264_09340 at 2183.309 kb on - strand, within CA264_09340 at 2183.325 kb on + strand, within CA264_09340 at 2183.325 kb on + strand, within CA264_09340 at 2183.325 kb on + strand, within CA264_09340 at 2183.325 kb on + strand, within CA264_09340 at 2183.326 kb on - strand, within CA264_09340 at 2183.326 kb on - strand, within CA264_09340 at 2183.343 kb on + strand, within CA264_09340 at 2183.344 kb on - strand, within CA264_09340 at 2183.390 kb on - strand, within CA264_09340 at 2183.433 kb on + strand, within CA264_09340 at 2183.434 kb on - strand, within CA264_09340 at 2183.444 kb on - strand, within CA264_09340 at 2183.537 kb on - strand at 2183.541 kb on + strand at 2183.595 kb on - strand at 2183.649 kb on + strand at 2183.662 kb on - strand at 2183.670 kb on + strand at 2183.728 kb on - strand at 2183.761 kb on - strand at 2183.929 kb on + strand, within CA264_09345 at 2184.022 kb on + strand, within CA264_09345 at 2184.083 kb on + strand, within CA264_09345 at 2184.134 kb on - strand, within CA264_09345 at 2184.178 kb on - strand, within CA264_09345 at 2184.178 kb on - strand, within CA264_09345 at 2184.178 kb on - strand, within CA264_09345 at 2184.202 kb on + strand, within CA264_09345 at 2184.238 kb on - strand, within CA264_09345 at 2184.343 kb on - strand, within CA264_09345 at 2184.347 kb on + strand, within CA264_09345 at 2184.402 kb on + strand, within CA264_09345 at 2184.472 kb on + strand, within CA264_09345 at 2184.507 kb on + strand, within CA264_09345 at 2184.507 kb on + strand, within CA264_09345 at 2184.522 kb on + strand, within CA264_09345 at 2184.523 kb on - strand, within CA264_09345 at 2184.523 kb on - strand, within CA264_09345 at 2184.525 kb on + strand, within CA264_09345 at 2184.525 kb on + strand, within CA264_09345 at 2184.526 kb on - strand, within CA264_09345 at 2184.526 kb on - strand, within CA264_09345 at 2184.526 kb on - strand, within CA264_09345
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 2,182,250 - CA264_09335 0.50 +0.5 2,182,260 + CA264_09335 0.50 -0.4 2,182,263 + CA264_09335 0.51 +1.1 2,182,263 + CA264_09335 0.51 +0.0 2,182,263 + CA264_09335 0.51 +0.8 2,182,263 + CA264_09335 0.51 -0.4 2,182,263 + CA264_09335 0.51 +0.1 2,182,264 - CA264_09335 0.51 +0.4 2,182,353 + CA264_09335 0.58 -0.1 2,182,353 + CA264_09335 0.58 -0.4 2,182,359 + CA264_09335 0.58 -0.2 2,182,359 + CA264_09335 0.58 +1.1 2,182,431 + CA264_09335 0.64 -0.8 2,182,432 - CA264_09335 0.64 -2.2 2,182,432 - CA264_09335 0.64 +0.6 2,182,452 + CA264_09335 0.66 +0.6 2,182,453 - CA264_09335 0.66 -0.3 2,182,457 - CA264_09335 0.66 -0.8 2,182,484 - CA264_09335 0.69 +0.5 2,182,590 + CA264_09335 0.77 -1.9 2,182,605 + CA264_09335 0.78 +0.3 2,182,606 - CA264_09335 0.78 -0.5 2,182,613 - CA264_09335 0.79 -0.7 2,182,856 + -0.7 2,182,857 - +0.8 2,182,862 - -1.3 2,182,874 - +0.5 2,182,874 - +0.3 2,182,885 - +0.4 2,182,903 + -0.0 2,182,929 - -0.3 2,182,933 + +0.4 2,182,938 + +0.5 2,183,085 + +0.8 2,183,308 + CA264_09340 0.44 +0.2 2,183,308 + CA264_09340 0.44 +0.5 2,183,309 - CA264_09340 0.44 +1.4 2,183,309 - CA264_09340 0.44 -0.1 2,183,309 - CA264_09340 0.44 +0.8 2,183,309 - CA264_09340 0.44 +1.4 2,183,309 - CA264_09340 0.44 -0.4 2,183,325 + CA264_09340 0.48 +0.4 2,183,325 + CA264_09340 0.48 -0.2 2,183,325 + CA264_09340 0.48 -0.0 2,183,325 + CA264_09340 0.48 +0.8 2,183,326 - CA264_09340 0.48 +0.7 2,183,326 - CA264_09340 0.48 +0.2 2,183,343 + CA264_09340 0.53 +1.3 2,183,344 - CA264_09340 0.53 +0.6 2,183,390 - CA264_09340 0.64 -0.3 2,183,433 + CA264_09340 0.75 +0.6 2,183,434 - CA264_09340 0.75 -0.6 2,183,444 - CA264_09340 0.78 +0.7 2,183,537 - +1.5 2,183,541 + -0.7 2,183,595 - +1.3 2,183,649 + -0.7 2,183,662 - -0.0 2,183,670 + -0.2 2,183,728 - +0.7 2,183,761 - +0.6 2,183,929 + CA264_09345 0.23 +0.1 2,184,022 + CA264_09345 0.31 +0.4 2,184,083 + CA264_09345 0.37 -0.3 2,184,134 - CA264_09345 0.42 -0.0 2,184,178 - CA264_09345 0.46 -1.0 2,184,178 - CA264_09345 0.46 +0.2 2,184,178 - CA264_09345 0.46 +0.2 2,184,202 + CA264_09345 0.48 +2.0 2,184,238 - CA264_09345 0.51 +0.6 2,184,343 - CA264_09345 0.61 +0.6 2,184,347 + CA264_09345 0.61 +1.5 2,184,402 + CA264_09345 0.66 -0.3 2,184,472 + CA264_09345 0.72 +0.5 2,184,507 + CA264_09345 0.76 +0.5 2,184,507 + CA264_09345 0.76 -1.4 2,184,522 + CA264_09345 0.77 +0.0 2,184,523 - CA264_09345 0.77 +0.3 2,184,523 - CA264_09345 0.77 -1.0 2,184,525 + CA264_09345 0.77 +0.2 2,184,525 + CA264_09345 0.77 -0.7 2,184,526 - CA264_09345 0.77 +0.3 2,184,526 - CA264_09345 0.77 -0.4 2,184,526 - CA264_09345 0.77 +0.5
Or see this region's nucleotide sequence