Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04220 and CA264_04225 are separated by 4 nucleotides CA264_04225 and CA264_04230 overlap by 4 nucleotides CA264_04230 and CA264_04235 are separated by 4 nucleotides CA264_04235 and CA264_04240 are separated by 231 nucleotides
CA264_04220: CA264_04220 - NADH-quinone oxidoreductase subunit L, at 975,311 to 977,197
_04220
CA264_04225: CA264_04225 - NADH-quinone oxidoreductase subunit K, at 977,202 to 977,510
_04225
CA264_04230: CA264_04230 - NADH:ubiquinone oxidoreductase subunit J, at 977,507 to 978,043
_04230
CA264_04235: CA264_04235 - NADH-quinone oxidoreductase subunit I, at 978,048 to 978,563
_04235
CA264_04240: CA264_04240 - NADH-quinone oxidoreductase subunit H, at 978,795 to 979,757
_04240
Position (kb) 978
979 Strain fitness (log2 ratio) -2
-1
0
1
2 at 977.066 kb on - strand at 977.144 kb on + strand at 977.145 kb on - strand at 977.148 kb on - strand at 977.148 kb on - strand at 977.148 kb on - strand at 977.156 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.214 kb on + strand at 977.215 kb on - strand at 977.215 kb on - strand at 977.255 kb on - strand, within CA264_04225 at 977.280 kb on + strand, within CA264_04225 at 977.354 kb on + strand, within CA264_04225 at 977.355 kb on - strand, within CA264_04225 at 977.408 kb on + strand, within CA264_04225 at 977.414 kb on + strand, within CA264_04225 at 977.414 kb on + strand, within CA264_04225 at 977.415 kb on - strand, within CA264_04225 at 977.415 kb on - strand, within CA264_04225 at 977.493 kb on + strand at 977.493 kb on + strand at 977.494 kb on - strand at 977.494 kb on - strand at 977.597 kb on + strand, within CA264_04230 at 977.624 kb on + strand, within CA264_04230 at 977.624 kb on + strand, within CA264_04230 at 977.626 kb on + strand, within CA264_04230 at 977.631 kb on + strand, within CA264_04230 at 977.642 kb on + strand, within CA264_04230 at 977.718 kb on + strand, within CA264_04230 at 977.771 kb on - strand, within CA264_04230 at 977.771 kb on - strand, within CA264_04230 at 977.780 kb on + strand, within CA264_04230 at 977.780 kb on + strand, within CA264_04230 at 978.050 kb on - strand at 978.057 kb on + strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.058 kb on - strand at 978.139 kb on + strand, within CA264_04235 at 978.139 kb on + strand, within CA264_04235 at 978.140 kb on - strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.142 kb on + strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.143 kb on - strand, within CA264_04235 at 978.148 kb on + strand, within CA264_04235 at 978.196 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.256 kb on + strand, within CA264_04235 at 978.280 kb on + strand, within CA264_04235 at 978.376 kb on - strand, within CA264_04235 at 978.494 kb on - strand, within CA264_04235 at 978.543 kb on - strand at 978.557 kb on + strand at 978.563 kb on + strand at 978.564 kb on - strand at 978.564 kb on - strand at 978.586 kb on + strand at 978.588 kb on + strand at 978.641 kb on + strand at 978.641 kb on + strand at 978.664 kb on + strand at 978.748 kb on - strand at 978.771 kb on + strand at 978.778 kb on - strand at 978.953 kb on + strand, within CA264_04240 at 978.954 kb on - strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.009 kb on + strand, within CA264_04240 at 979.010 kb on - strand, within CA264_04240 at 979.051 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.383 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.385 kb on + strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.386 kb on - strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.393 kb on + strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.394 kb on - strand, within CA264_04240 at 979.499 kb on + strand, within CA264_04240
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 977,066 - -0.5 977,144 + +0.2 977,145 - -1.2 977,148 - -0.0 977,148 - -0.0 977,148 - +0.5 977,156 + -0.6 977,214 + -0.9 977,214 + +0.0 977,214 + +0.0 977,214 + +0.3 977,214 + -0.2 977,215 - -2.0 977,215 - +0.3 977,255 - CA264_04225 0.17 -0.4 977,280 + CA264_04225 0.25 +0.3 977,354 + CA264_04225 0.49 +0.6 977,355 - CA264_04225 0.50 +1.8 977,408 + CA264_04225 0.67 +0.9 977,414 + CA264_04225 0.69 -0.3 977,414 + CA264_04225 0.69 -0.4 977,415 - CA264_04225 0.69 -0.3 977,415 - CA264_04225 0.69 +0.2 977,493 + +0.5 977,493 + -0.0 977,494 - -0.2 977,494 - +0.8 977,597 + CA264_04230 0.17 +0.2 977,624 + CA264_04230 0.22 +1.2 977,624 + CA264_04230 0.22 -0.7 977,626 + CA264_04230 0.22 -0.5 977,631 + CA264_04230 0.23 -0.7 977,642 + CA264_04230 0.25 -0.2 977,718 + CA264_04230 0.39 +0.0 977,771 - CA264_04230 0.49 +0.4 977,771 - CA264_04230 0.49 +0.0 977,780 + CA264_04230 0.51 -1.8 977,780 + CA264_04230 0.51 -0.4 978,050 - -2.0 978,057 + +0.5 978,058 - -0.3 978,058 - -0.9 978,058 - -0.2 978,058 - -0.1 978,139 + CA264_04235 0.18 +0.8 978,139 + CA264_04235 0.18 +0.7 978,140 - CA264_04235 0.18 +0.8 978,142 + CA264_04235 0.18 -0.1 978,142 + CA264_04235 0.18 -0.0 978,143 - CA264_04235 0.18 -0.0 978,143 - CA264_04235 0.18 -0.9 978,148 + CA264_04235 0.19 +0.2 978,196 + CA264_04235 0.29 -1.2 978,256 + CA264_04235 0.40 +0.4 978,256 + CA264_04235 0.40 -0.6 978,280 + CA264_04235 0.45 -1.3 978,376 - CA264_04235 0.64 +0.6 978,494 - CA264_04235 0.86 +0.6 978,543 - -0.9 978,557 + +0.3 978,563 + -0.2 978,564 - -0.2 978,564 - +0.1 978,586 + -0.7 978,588 + +1.8 978,641 + -0.3 978,641 + +0.6 978,664 + +0.8 978,748 - +0.6 978,771 + +0.2 978,778 - -0.1 978,953 + CA264_04240 0.16 -0.5 978,954 - CA264_04240 0.17 -0.4 979,009 + CA264_04240 0.22 +1.8 979,009 + CA264_04240 0.22 -0.8 979,010 - CA264_04240 0.22 -0.2 979,051 + CA264_04240 0.27 -0.6 979,383 + CA264_04240 0.61 -0.6 979,383 + CA264_04240 0.61 +1.4 979,385 + CA264_04240 0.61 +0.2 979,385 + CA264_04240 0.61 +0.0 979,385 + CA264_04240 0.61 -0.0 979,385 + CA264_04240 0.61 +0.4 979,386 - CA264_04240 0.61 +0.7 979,386 - CA264_04240 0.61 -0.8 979,393 + CA264_04240 0.62 -0.1 979,393 + CA264_04240 0.62 +0.3 979,394 - CA264_04240 0.62 +0.4 979,394 - CA264_04240 0.62 +1.3 979,499 + CA264_04240 0.73 +0.3
Or see this region's nucleotide sequence