Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04205

Experiment: m.b. Carbenicillin 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_04200 and CA264_04205 are separated by 379 nucleotidesCA264_04205 and CA264_04210 are separated by 157 nucleotides CA264_04200: CA264_04200 - cation-efflux pump, at 970,197 to 971,090 _04200 CA264_04205: CA264_04205 - hypothetical protein, at 971,470 to 972,045 _04205 CA264_04210: CA264_04210 - NADH-quinone oxidoreductase subunit N, at 972,203 to 973,663 _04210 Position (kb) 971 972 973Strain fitness (log2 ratio) -1 0 1 2 3 4at 970.492 kb on + strand, within CA264_04200at 970.508 kb on + strand, within CA264_04200at 970.521 kb on + strand, within CA264_04200at 970.522 kb on - strand, within CA264_04200at 970.588 kb on - strand, within CA264_04200at 970.739 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.777 kb on - strand, within CA264_04200at 970.778 kb on + strand, within CA264_04200at 970.794 kb on + strand, within CA264_04200at 970.794 kb on + strand, within CA264_04200at 970.795 kb on - strand, within CA264_04200at 970.795 kb on - strand, within CA264_04200at 970.798 kb on - strand, within CA264_04200at 970.922 kb on + strand, within CA264_04200at 970.923 kb on - strand, within CA264_04200at 970.928 kb on + strand, within CA264_04200at 970.928 kb on + strand, within CA264_04200at 970.944 kb on - strand, within CA264_04200at 971.040 kb on - strandat 971.107 kb on + strandat 971.142 kb on - strandat 971.143 kb on + strandat 971.144 kb on - strandat 971.235 kb on + strandat 971.291 kb on + strandat 971.291 kb on + strandat 971.324 kb on + strandat 971.325 kb on - strandat 971.425 kb on - strandat 971.431 kb on + strandat 971.432 kb on - strandat 971.478 kb on + strandat 971.561 kb on + strand, within CA264_04205at 971.561 kb on + strand, within CA264_04205at 971.561 kb on + strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.562 kb on - strand, within CA264_04205at 971.574 kb on + strand, within CA264_04205at 971.590 kb on + strand, within CA264_04205at 971.592 kb on + strand, within CA264_04205at 971.615 kb on + strand, within CA264_04205at 971.658 kb on - strand, within CA264_04205at 971.698 kb on + strand, within CA264_04205at 971.699 kb on - strand, within CA264_04205at 971.712 kb on + strand, within CA264_04205at 971.713 kb on - strand, within CA264_04205at 971.859 kb on + strand, within CA264_04205at 971.860 kb on - strand, within CA264_04205at 971.921 kb on + strand, within CA264_04205at 971.922 kb on - strand, within CA264_04205at 972.050 kb on + strandat 972.050 kb on + strandat 972.161 kb on + strandat 972.170 kb on - strandat 972.172 kb on + strandat 972.177 kb on - strandat 972.177 kb on - strandat 972.193 kb on - strandat 972.245 kb on + strandat 972.245 kb on + strandat 972.246 kb on - strandat 972.246 kb on - strandat 972.309 kb on - strandat 972.409 kb on - strand, within CA264_04210at 972.412 kb on - strand, within CA264_04210at 972.412 kb on - strand, within CA264_04210at 972.473 kb on + strand, within CA264_04210at 972.474 kb on - strand, within CA264_04210at 972.649 kb on + strand, within CA264_04210at 972.670 kb on + strand, within CA264_04210at 972.673 kb on + strand, within CA264_04210at 972.673 kb on + strand, within CA264_04210at 972.673 kb on + strand, within CA264_04210at 972.673 kb on + strand, within CA264_04210at 972.678 kb on + strand, within CA264_04210at 972.678 kb on + strand, within CA264_04210at 972.829 kb on + strand, within CA264_04210at 972.830 kb on - strand, within CA264_04210at 972.997 kb on + strand, within CA264_04210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
remove
970,492 + CA264_04200 0.33 +0.2
970,508 + CA264_04200 0.35 +0.6
970,521 + CA264_04200 0.36 +0.2
970,522 - CA264_04200 0.36 -0.0
970,588 - CA264_04200 0.44 +0.5
970,739 - CA264_04200 0.61 -1.5
970,777 - CA264_04200 0.65 +0.2
970,777 - CA264_04200 0.65 -0.8
970,777 - CA264_04200 0.65 -0.5
970,778 + CA264_04200 0.65 +2.2
970,794 + CA264_04200 0.67 -0.4
970,794 + CA264_04200 0.67 -0.2
970,795 - CA264_04200 0.67 +0.3
970,795 - CA264_04200 0.67 +0.1
970,798 - CA264_04200 0.67 +0.2
970,922 + CA264_04200 0.81 +1.0
970,923 - CA264_04200 0.81 +0.5
970,928 + CA264_04200 0.82 +0.8
970,928 + CA264_04200 0.82 -0.4
970,944 - CA264_04200 0.84 +0.8
971,040 - -0.4
971,107 + -1.1
971,142 - +0.5
971,143 + +0.1
971,144 - -0.1
971,235 + -0.1
971,291 + -0.3
971,291 + +0.8
971,324 + +1.2
971,325 - -0.0
971,425 - -0.5
971,431 + -0.7
971,432 - -0.4
971,478 + -0.2
971,561 + CA264_04205 0.16 -0.0
971,561 + CA264_04205 0.16 -0.4
971,561 + CA264_04205 0.16 +1.4
971,562 - CA264_04205 0.16 +0.8
971,562 - CA264_04205 0.16 -0.3
971,562 - CA264_04205 0.16 +0.8
971,562 - CA264_04205 0.16 +0.2
971,574 + CA264_04205 0.18 -1.2
971,590 + CA264_04205 0.21 +1.1
971,592 + CA264_04205 0.21 +1.1
971,615 + CA264_04205 0.25 +0.1
971,658 - CA264_04205 0.33 +0.2
971,698 + CA264_04205 0.40 -0.8
971,699 - CA264_04205 0.40 +0.2
971,712 + CA264_04205 0.42 +4.1
971,713 - CA264_04205 0.42 +1.8
971,859 + CA264_04205 0.68 +0.1
971,860 - CA264_04205 0.68 +1.4
971,921 + CA264_04205 0.78 +0.0
971,922 - CA264_04205 0.78 +0.3
972,050 + +1.4
972,050 + +0.3
972,161 + +0.0
972,170 - -1.2
972,172 + -0.1
972,177 - +1.2
972,177 - +0.5
972,193 - +0.0
972,245 + +0.5
972,245 + -0.2
972,246 - -0.8
972,246 - -0.4
972,309 - -0.5
972,409 - CA264_04210 0.14 +0.1
972,412 - CA264_04210 0.14 -0.3
972,412 - CA264_04210 0.14 +0.2
972,473 + CA264_04210 0.18 +0.4
972,474 - CA264_04210 0.19 -0.2
972,649 + CA264_04210 0.31 +0.1
972,670 + CA264_04210 0.32 -0.5
972,673 + CA264_04210 0.32 +0.0
972,673 + CA264_04210 0.32 +0.9
972,673 + CA264_04210 0.32 +0.7
972,673 + CA264_04210 0.32 -0.8
972,678 + CA264_04210 0.33 +2.4
972,678 + CA264_04210 0.33 +1.3
972,829 + CA264_04210 0.43 -0.2
972,830 - CA264_04210 0.43 -1.2
972,997 + CA264_04210 0.54 -0.8

Or see this region's nucleotide sequence