Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03865 and CA264_03870 are separated by 401 nucleotides CA264_03870 and CA264_03875 are separated by 3 nucleotides CA264_03875 and CA264_03880 are separated by 668 nucleotides
CA264_03865: CA264_03865 - phosphoglycerate dehydrogenase, at 901,259 to 902,215
_03865
CA264_03870: CA264_03870 - transcription elongation factor GreA, at 902,617 to 903,090
_03870
CA264_03875: CA264_03875 - HIT family protein, at 903,094 to 903,495
_03875
CA264_03880: CA264_03880 - crossover junction endodeoxyribonuclease RuvC, at 904,164 to 904,736
_03880
Position (kb) 903
904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 902.193 kb on + strand at 902.213 kb on + strand at 902.213 kb on + strand at 902.213 kb on + strand at 902.214 kb on - strand at 902.297 kb on - strand at 902.387 kb on - strand at 902.471 kb on + strand at 902.471 kb on + strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.472 kb on - strand at 902.477 kb on - strand at 902.478 kb on + strand at 902.479 kb on - strand at 902.494 kb on + strand at 902.494 kb on + strand at 902.494 kb on + strand at 902.495 kb on - strand at 902.495 kb on - strand at 902.499 kb on - strand at 902.499 kb on - strand at 902.501 kb on - strand at 902.540 kb on + strand at 902.616 kb on + strand at 902.617 kb on - strand at 902.632 kb on + strand at 902.635 kb on + strand at 902.635 kb on + strand at 902.636 kb on - strand at 902.762 kb on - strand, within CA264_03870 at 902.930 kb on - strand, within CA264_03870 at 902.930 kb on - strand, within CA264_03870 at 902.931 kb on + strand, within CA264_03870 at 903.094 kb on - strand at 903.122 kb on + strand at 903.150 kb on - strand, within CA264_03875 at 903.150 kb on - strand, within CA264_03875 at 903.233 kb on + strand, within CA264_03875 at 903.234 kb on - strand, within CA264_03875 at 903.239 kb on - strand, within CA264_03875 at 903.265 kb on + strand, within CA264_03875 at 903.265 kb on + strand, within CA264_03875 at 903.335 kb on + strand, within CA264_03875 at 903.335 kb on + strand, within CA264_03875 at 903.336 kb on - strand, within CA264_03875 at 903.336 kb on - strand, within CA264_03875 at 903.459 kb on - strand at 903.494 kb on - strand at 903.511 kb on - strand at 903.511 kb on - strand at 903.610 kb on + strand at 903.720 kb on + strand at 903.827 kb on + strand at 903.895 kb on + strand at 903.925 kb on + strand at 903.975 kb on - strand at 903.989 kb on - strand at 904.034 kb on + strand at 904.034 kb on + strand at 904.035 kb on - strand at 904.076 kb on + strand at 904.077 kb on - strand at 904.077 kb on - strand at 904.081 kb on - strand at 904.131 kb on + strand at 904.146 kb on - strand at 904.150 kb on - strand at 904.150 kb on - strand at 904.475 kb on + strand, within CA264_03880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 902,193 + -0.5 902,213 + +0.0 902,213 + -1.3 902,213 + -2.0 902,214 - -0.2 902,297 - -0.1 902,387 - -0.2 902,471 + -0.0 902,471 + -0.4 902,472 - -0.3 902,472 - -1.2 902,472 - -0.6 902,472 - -0.5 902,477 - -0.4 902,478 + -0.7 902,479 - +0.3 902,494 + -0.6 902,494 + -0.2 902,494 + +0.2 902,495 - +0.3 902,495 - -0.7 902,499 - +1.2 902,499 - -0.5 902,501 - +0.5 902,540 + +0.0 902,616 + +1.7 902,617 - +1.0 902,632 + -2.2 902,635 + -1.7 902,635 + +0.3 902,636 - +0.3 902,762 - CA264_03870 0.31 -1.6 902,930 - CA264_03870 0.66 -0.8 902,930 - CA264_03870 0.66 -0.4 902,931 + CA264_03870 0.66 -3.3 903,094 - +1.2 903,122 + +0.8 903,150 - CA264_03875 0.14 -0.3 903,150 - CA264_03875 0.14 -0.3 903,233 + CA264_03875 0.35 -0.9 903,234 - CA264_03875 0.35 +1.4 903,239 - CA264_03875 0.36 +0.4 903,265 + CA264_03875 0.43 +0.4 903,265 + CA264_03875 0.43 -0.0 903,335 + CA264_03875 0.60 +1.8 903,335 + CA264_03875 0.60 -0.2 903,336 - CA264_03875 0.60 +1.4 903,336 - CA264_03875 0.60 -2.9 903,459 - -1.2 903,494 - -0.0 903,511 - -1.8 903,511 - -1.7 903,610 + +0.8 903,720 + -0.9 903,827 + -0.3 903,895 + -2.2 903,925 + -0.3 903,975 - +0.3 903,989 - +0.1 904,034 + -0.1 904,034 + +0.1 904,035 - +0.0 904,076 + +0.1 904,077 - +0.6 904,077 - +0.8 904,081 - -1.5 904,131 + +0.4 904,146 - +0.8 904,150 - +1.2 904,150 - -0.6 904,475 + CA264_03880 0.54 -1.2
Or see this region's nucleotide sequence