Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03305

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03295 and CA264_03300 are separated by 415 nucleotidesCA264_03300 and CA264_03305 are separated by 110 nucleotidesCA264_03305 and CA264_03310 are separated by 128 nucleotides CA264_03295: CA264_03295 - hypothetical protein, at 773,178 to 773,873 _03295 CA264_03300: CA264_03300 - hypothetical protein, at 774,289 to 774,489 _03300 CA264_03305: CA264_03305 - hypothetical protein, at 774,600 to 775,832 _03305 CA264_03310: CA264_03310 - peptidase M14, at 775,961 to 777,403 _03310 Position (kb) 774 775 776Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 773.664 kb on + strand, within CA264_03295at 773.665 kb on - strand, within CA264_03295at 773.952 kb on + strandat 773.952 kb on + strandat 773.953 kb on - strandat 773.962 kb on + strandat 773.962 kb on + strandat 773.963 kb on - strandat 773.965 kb on + strandat 773.965 kb on + strandat 773.965 kb on + strandat 773.966 kb on - strandat 773.968 kb on - strandat 773.968 kb on - strandat 773.971 kb on - strandat 774.108 kb on - strandat 774.113 kb on - strandat 774.185 kb on - strandat 774.221 kb on - strandat 774.259 kb on + strandat 774.259 kb on + strandat 774.260 kb on - strandat 774.260 kb on - strandat 774.265 kb on - strandat 774.268 kb on - strandat 774.269 kb on + strandat 774.269 kb on + strandat 774.270 kb on - strandat 774.270 kb on - strandat 774.353 kb on + strand, within CA264_03300at 774.420 kb on + strand, within CA264_03300at 774.443 kb on + strand, within CA264_03300at 774.466 kb on + strand, within CA264_03300at 774.471 kb on - strandat 774.512 kb on - strandat 774.512 kb on - strandat 774.514 kb on - strandat 774.573 kb on + strandat 774.602 kb on - strandat 774.616 kb on + strandat 774.617 kb on - strandat 774.659 kb on + strandat 774.672 kb on - strandat 774.690 kb on - strandat 774.728 kb on - strand, within CA264_03305at 775.038 kb on - strand, within CA264_03305at 775.108 kb on - strand, within CA264_03305at 775.108 kb on - strand, within CA264_03305at 775.108 kb on - strand, within CA264_03305at 775.139 kb on + strand, within CA264_03305at 775.139 kb on + strand, within CA264_03305at 775.210 kb on + strand, within CA264_03305at 775.215 kb on + strand, within CA264_03305at 775.215 kb on + strand, within CA264_03305at 775.239 kb on - strand, within CA264_03305at 775.409 kb on + strand, within CA264_03305at 775.409 kb on + strand, within CA264_03305at 775.611 kb on + strand, within CA264_03305at 775.612 kb on - strand, within CA264_03305at 775.612 kb on - strand, within CA264_03305at 775.612 kb on - strand, within CA264_03305at 775.614 kb on - strand, within CA264_03305at 775.743 kb on + strandat 775.743 kb on + strandat 775.744 kb on - strandat 775.745 kb on + strandat 775.745 kb on + strandat 775.745 kb on + strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.746 kb on - strandat 775.824 kb on + strandat 775.837 kb on + strandat 775.838 kb on - strandat 775.838 kb on - strandat 775.854 kb on + strandat 775.854 kb on + strandat 775.855 kb on - strandat 775.855 kb on - strandat 775.860 kb on - strandat 775.873 kb on + strandat 776.065 kb on + strandat 776.091 kb on - strandat 776.188 kb on - strand, within CA264_03310at 776.256 kb on + strand, within CA264_03310at 776.311 kb on - strand, within CA264_03310at 776.355 kb on + strand, within CA264_03310at 776.356 kb on - strand, within CA264_03310at 776.463 kb on + strand, within CA264_03310at 776.464 kb on - strand, within CA264_03310at 776.464 kb on - strand, within CA264_03310at 776.496 kb on + strand, within CA264_03310at 776.496 kb on + strand, within CA264_03310at 776.700 kb on - strand, within CA264_03310at 776.756 kb on - strand, within CA264_03310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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773,664 + CA264_03295 0.70 -2.9
773,665 - CA264_03295 0.70 +0.3
773,952 + +0.1
773,952 + -1.3
773,953 - -1.7
773,962 + -0.1
773,962 + +2.9
773,963 - -0.7
773,965 + +1.7
773,965 + +0.4
773,965 + -0.1
773,966 - -0.5
773,968 - +1.3
773,968 - -1.1
773,971 - +0.7
774,108 - -0.1
774,113 - -0.9
774,185 - -0.7
774,221 - -0.3
774,259 + -0.6
774,259 + -0.3
774,260 - +0.1
774,260 - -0.6
774,265 - -0.3
774,268 - -1.3
774,269 + -0.2
774,269 + -0.5
774,270 - -0.2
774,270 - +0.9
774,353 + CA264_03300 0.32 -0.7
774,420 + CA264_03300 0.65 -0.2
774,443 + CA264_03300 0.77 -1.0
774,466 + CA264_03300 0.88 -0.4
774,471 - -1.6
774,512 - +0.5
774,512 - +2.1
774,514 - +0.3
774,573 + -0.4
774,602 - -0.2
774,616 + -0.4
774,617 - -0.1
774,659 + +0.4
774,672 - -1.7
774,690 - +0.9
774,728 - CA264_03305 0.10 -0.7
775,038 - CA264_03305 0.36 +1.9
775,108 - CA264_03305 0.41 -1.1
775,108 - CA264_03305 0.41 -0.7
775,108 - CA264_03305 0.41 -1.7
775,139 + CA264_03305 0.44 +0.1
775,139 + CA264_03305 0.44 -0.1
775,210 + CA264_03305 0.49 +0.3
775,215 + CA264_03305 0.50 -1.5
775,215 + CA264_03305 0.50 -0.1
775,239 - CA264_03305 0.52 -0.4
775,409 + CA264_03305 0.66 -1.6
775,409 + CA264_03305 0.66 -2.5
775,611 + CA264_03305 0.82 -1.0
775,612 - CA264_03305 0.82 -0.1
775,612 - CA264_03305 0.82 -1.5
775,612 - CA264_03305 0.82 -2.0
775,614 - CA264_03305 0.82 -1.9
775,743 + +1.2
775,743 + -0.4
775,744 - +0.9
775,745 + -0.4
775,745 + -1.7
775,745 + -0.5
775,746 - -0.8
775,746 - -2.0
775,746 - -0.6
775,746 - -1.3
775,746 - -0.5
775,746 - -0.1
775,746 - -2.1
775,824 + +0.1
775,837 + -1.6
775,838 - -0.7
775,838 - -0.4
775,854 + +0.2
775,854 + +1.3
775,855 - +0.9
775,855 - -0.0
775,860 - -0.5
775,873 + +0.2
776,065 + +2.5
776,091 - -0.1
776,188 - CA264_03310 0.16 +0.7
776,256 + CA264_03310 0.20 +0.1
776,311 - CA264_03310 0.24 -0.3
776,355 + CA264_03310 0.27 +1.5
776,356 - CA264_03310 0.27 +1.3
776,463 + CA264_03310 0.35 -0.7
776,464 - CA264_03310 0.35 +0.2
776,464 - CA264_03310 0.35 +1.4
776,496 + CA264_03310 0.37 +0.1
776,496 + CA264_03310 0.37 +0.4
776,700 - CA264_03310 0.51 -0.6
776,756 - CA264_03310 0.55 +1.5

Or see this region's nucleotide sequence