Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02470 and CA264_02475 overlap by 56 nucleotides CA264_02475 and CA264_02480 are separated by 65 nucleotides
CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404
_02470
CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635
_02475
CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879
_02480
Position (kb) 575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 574.372 kb on - strand, within CA264_02470 at 574.375 kb on + strand, within CA264_02470 at 574.437 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.533 kb on + strand, within CA264_02470 at 574.534 kb on - strand, within CA264_02470 at 574.681 kb on + strand, within CA264_02470 at 574.757 kb on + strand, within CA264_02470 at 574.815 kb on + strand, within CA264_02470 at 574.857 kb on + strand, within CA264_02470 at 574.907 kb on + strand, within CA264_02470 at 575.077 kb on - strand, within CA264_02470 at 575.108 kb on - strand, within CA264_02470 at 575.181 kb on - strand, within CA264_02470 at 575.253 kb on + strand, within CA264_02470 at 575.298 kb on - strand at 575.345 kb on - strand at 575.375 kb on + strand at 575.376 kb on - strand at 575.405 kb on + strand at 575.420 kb on + strand at 575.420 kb on + strand at 575.420 kb on + strand at 575.421 kb on - strand at 575.421 kb on - strand at 575.504 kb on - strand, within CA264_02475 at 575.529 kb on + strand, within CA264_02475 at 575.530 kb on - strand, within CA264_02475 at 575.597 kb on - strand, within CA264_02475 at 575.832 kb on + strand, within CA264_02475 at 575.921 kb on - strand, within CA264_02475 at 576.096 kb on + strand, within CA264_02475 at 576.097 kb on - strand, within CA264_02475 at 576.173 kb on - strand, within CA264_02475 at 576.302 kb on - strand, within CA264_02475 at 576.351 kb on + strand, within CA264_02475 at 576.352 kb on - strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475 at 576.456 kb on + strand, within CA264_02475 at 576.457 kb on - strand, within CA264_02475 at 576.544 kb on + strand at 576.599 kb on + strand at 576.604 kb on + strand at 576.604 kb on + strand at 576.604 kb on + strand at 576.605 kb on - strand at 576.605 kb on - strand at 576.616 kb on + strand at 576.647 kb on + strand at 576.647 kb on + strand at 576.648 kb on - strand at 576.648 kb on - strand at 576.648 kb on - strand at 576.673 kb on + strand at 576.673 kb on + strand at 576.702 kb on + strand at 576.703 kb on - strand at 576.704 kb on + strand at 576.705 kb on - strand at 576.705 kb on - strand at 576.777 kb on - strand at 577.000 kb on - strand, within CA264_02480 at 577.054 kb on - strand, within CA264_02480 at 577.261 kb on + strand, within CA264_02480 at 577.274 kb on + strand, within CA264_02480 at 577.274 kb on + strand, within CA264_02480 at 577.457 kb on + strand, within CA264_02480 at 577.458 kb on - strand, within CA264_02480 at 577.509 kb on - strand, within CA264_02480 at 577.509 kb on - strand, within CA264_02480 at 577.539 kb on + strand, within CA264_02480 at 577.540 kb on - strand, within CA264_02480 at 577.570 kb on + strand, within CA264_02480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 574,372 - CA264_02470 0.26 +0.4 574,375 + CA264_02470 0.27 -3.1 574,437 + CA264_02470 0.31 -0.9 574,533 + CA264_02470 0.38 +0.6 574,533 + CA264_02470 0.38 +0.5 574,534 - CA264_02470 0.38 -1.1 574,681 + CA264_02470 0.48 -0.7 574,757 + CA264_02470 0.54 +0.2 574,815 + CA264_02470 0.58 +1.2 574,857 + CA264_02470 0.61 +0.0 574,907 + CA264_02470 0.65 -0.1 575,077 - CA264_02470 0.77 +0.3 575,108 - CA264_02470 0.79 -0.3 575,181 - CA264_02470 0.84 -0.2 575,253 + CA264_02470 0.89 -0.8 575,298 - +0.2 575,345 - +1.0 575,375 + +0.5 575,376 - -0.5 575,405 + -1.1 575,420 + -0.3 575,420 + +1.2 575,420 + +0.3 575,421 - +0.1 575,421 - +2.1 575,504 - CA264_02475 0.12 +0.1 575,529 + CA264_02475 0.14 -0.3 575,530 - CA264_02475 0.14 -0.3 575,597 - CA264_02475 0.19 +0.3 575,832 + CA264_02475 0.38 +0.3 575,921 - CA264_02475 0.44 -0.3 576,096 + CA264_02475 0.58 -0.5 576,097 - CA264_02475 0.58 +1.3 576,173 - CA264_02475 0.64 -0.8 576,302 - CA264_02475 0.74 +0.4 576,351 + CA264_02475 0.78 -1.2 576,352 - CA264_02475 0.78 -0.5 576,403 + CA264_02475 0.82 +0.5 576,403 + CA264_02475 0.82 +1.2 576,456 + CA264_02475 0.86 +0.1 576,457 - CA264_02475 0.86 +1.9 576,544 + +0.3 576,599 + -3.3 576,604 + -1.1 576,604 + -1.1 576,604 + +1.9 576,605 - +0.2 576,605 - -0.3 576,616 + +0.6 576,647 + -0.5 576,647 + -0.3 576,648 - +0.9 576,648 - +1.2 576,648 - -0.7 576,673 + -0.8 576,673 + +0.5 576,702 + +0.9 576,703 - +0.5 576,704 + -1.2 576,705 - -0.1 576,705 - -1.7 576,777 - -0.2 577,000 - CA264_02480 0.25 -0.5 577,054 - CA264_02480 0.30 -0.9 577,261 + CA264_02480 0.47 -0.1 577,274 + CA264_02480 0.49 +0.6 577,274 + CA264_02480 0.49 -0.6 577,457 + CA264_02480 0.64 -0.1 577,458 - CA264_02480 0.64 +0.5 577,509 - CA264_02480 0.69 -2.1 577,509 - CA264_02480 0.69 -0.9 577,539 + CA264_02480 0.71 -0.1 577,540 - CA264_02480 0.71 -0.4 577,570 + CA264_02480 0.74 -0.2
Or see this region's nucleotide sequence