Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02395

Experiment: m.b. Carbenicillin 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_02390 and CA264_02395 overlap by 8 nucleotidesCA264_02395 and CA264_02400 are separated by 153 nucleotides CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625 _02390 CA264_02395: CA264_02395 - aspartate kinase, at 553,618 to 554,949 _02395 CA264_02400: CA264_02400 - T9SS C-terminal target domain-containing protein, at 555,103 to 559,530 _02400 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 552.688 kb on - strand, within CA264_02390at 552.720 kb on + strand, within CA264_02390at 552.781 kb on + strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 552.932 kb on - strand, within CA264_02390at 553.014 kb on + strand, within CA264_02390at 553.022 kb on + strand, within CA264_02390at 553.035 kb on - strand, within CA264_02390at 553.102 kb on - strand, within CA264_02390at 553.183 kb on + strand, within CA264_02390at 553.184 kb on - strand, within CA264_02390at 553.184 kb on - strand, within CA264_02390at 553.187 kb on + strand, within CA264_02390at 553.188 kb on - strand, within CA264_02390at 553.287 kb on - strand, within CA264_02390at 553.333 kb on - strand, within CA264_02390at 553.495 kb on + strand, within CA264_02390at 553.571 kb on - strandat 553.586 kb on + strandat 553.620 kb on - strandat 553.693 kb on - strandat 553.696 kb on + strandat 553.697 kb on - strandat 553.801 kb on - strand, within CA264_02395at 553.821 kb on + strand, within CA264_02395at 553.821 kb on + strand, within CA264_02395at 553.822 kb on - strand, within CA264_02395at 553.840 kb on + strand, within CA264_02395at 553.847 kb on - strand, within CA264_02395at 553.874 kb on - strand, within CA264_02395at 553.893 kb on + strand, within CA264_02395at 553.894 kb on - strand, within CA264_02395at 554.056 kb on + strand, within CA264_02395at 554.057 kb on - strand, within CA264_02395at 554.206 kb on + strand, within CA264_02395at 554.258 kb on - strand, within CA264_02395at 554.352 kb on - strand, within CA264_02395at 554.408 kb on + strand, within CA264_02395at 554.409 kb on - strand, within CA264_02395at 554.409 kb on - strand, within CA264_02395at 554.477 kb on + strand, within CA264_02395at 554.477 kb on + strand, within CA264_02395at 554.478 kb on - strand, within CA264_02395at 554.565 kb on - strand, within CA264_02395at 554.626 kb on + strand, within CA264_02395at 554.717 kb on + strand, within CA264_02395at 554.718 kb on - strand, within CA264_02395at 554.739 kb on + strand, within CA264_02395at 554.740 kb on - strand, within CA264_02395at 554.741 kb on + strand, within CA264_02395at 554.741 kb on + strand, within CA264_02395at 554.741 kb on + strand, within CA264_02395at 554.741 kb on + strand, within CA264_02395at 554.741 kb on + strand, within CA264_02395at 554.742 kb on - strand, within CA264_02395at 554.795 kb on + strand, within CA264_02395at 554.795 kb on + strand, within CA264_02395at 554.816 kb on - strandat 554.854 kb on + strandat 554.952 kb on - strandat 554.955 kb on + strandat 554.975 kb on + strandat 554.975 kb on + strandat 554.975 kb on + strandat 554.976 kb on - strandat 555.162 kb on - strandat 555.195 kb on + strandat 555.196 kb on - strandat 555.218 kb on - strandat 555.239 kb on - strandat 555.255 kb on + strandat 555.310 kb on - strandat 555.417 kb on - strandat 555.440 kb on + strandat 555.480 kb on - strandat 555.563 kb on - strand, within CA264_02400at 555.564 kb on + strand, within CA264_02400at 555.611 kb on - strand, within CA264_02400at 555.641 kb on + strand, within CA264_02400at 555.686 kb on + strand, within CA264_02400at 555.687 kb on - strand, within CA264_02400at 555.687 kb on - strand, within CA264_02400at 555.687 kb on - strand, within CA264_02400at 555.709 kb on - strand, within CA264_02400at 555.733 kb on + strand, within CA264_02400at 555.734 kb on - strand, within CA264_02400at 555.747 kb on + strand, within CA264_02400at 555.747 kb on + strand, within CA264_02400at 555.756 kb on - strand, within CA264_02400at 555.854 kb on + strand, within CA264_02400at 555.854 kb on + strand, within CA264_02400at 555.855 kb on - strand, within CA264_02400at 555.868 kb on + strand, within CA264_02400at 555.868 kb on + strand, within CA264_02400at 555.869 kb on - strand, within CA264_02400at 555.904 kb on - strand, within CA264_02400at 555.918 kb on - strand, within CA264_02400at 555.949 kb on - strand, within CA264_02400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
remove
552,688 - CA264_02390 0.18 -0.1
552,720 + CA264_02390 0.21 +0.2
552,781 + CA264_02390 0.26 +0.3
552,932 - CA264_02390 0.39 +0.9
552,932 - CA264_02390 0.39 +0.4
552,932 - CA264_02390 0.39 +0.1
553,014 + CA264_02390 0.46 +0.5
553,022 + CA264_02390 0.47 -0.1
553,035 - CA264_02390 0.48 -0.4
553,102 - CA264_02390 0.54 +0.1
553,183 + CA264_02390 0.61 -0.5
553,184 - CA264_02390 0.61 -1.0
553,184 - CA264_02390 0.61 -0.7
553,187 + CA264_02390 0.62 -2.4
553,188 - CA264_02390 0.62 +0.1
553,287 - CA264_02390 0.70 +0.2
553,333 - CA264_02390 0.74 -0.0
553,495 + CA264_02390 0.89 +1.9
553,571 - +2.9
553,586 + -0.1
553,620 - +0.6
553,693 - -0.1
553,696 + -0.7
553,697 - +0.5
553,801 - CA264_02395 0.14 +0.5
553,821 + CA264_02395 0.15 -0.2
553,821 + CA264_02395 0.15 +1.3
553,822 - CA264_02395 0.15 -1.4
553,840 + CA264_02395 0.17 +0.2
553,847 - CA264_02395 0.17 -1.9
553,874 - CA264_02395 0.19 -1.0
553,893 + CA264_02395 0.21 +0.1
553,894 - CA264_02395 0.21 -0.7
554,056 + CA264_02395 0.33 -0.0
554,057 - CA264_02395 0.33 -0.1
554,206 + CA264_02395 0.44 -0.4
554,258 - CA264_02395 0.48 +0.1
554,352 - CA264_02395 0.55 -0.1
554,408 + CA264_02395 0.59 -1.1
554,409 - CA264_02395 0.59 -0.7
554,409 - CA264_02395 0.59 -0.7
554,477 + CA264_02395 0.64 -1.2
554,477 + CA264_02395 0.64 +0.7
554,478 - CA264_02395 0.65 -1.0
554,565 - CA264_02395 0.71 -0.6
554,626 + CA264_02395 0.76 -0.7
554,717 + CA264_02395 0.83 -2.1
554,718 - CA264_02395 0.83 +0.9
554,739 + CA264_02395 0.84 -0.5
554,740 - CA264_02395 0.84 -0.4
554,741 + CA264_02395 0.84 +0.1
554,741 + CA264_02395 0.84 -0.1
554,741 + CA264_02395 0.84 -0.3
554,741 + CA264_02395 0.84 +0.2
554,741 + CA264_02395 0.84 -0.3
554,742 - CA264_02395 0.84 -0.8
554,795 + CA264_02395 0.88 -0.7
554,795 + CA264_02395 0.88 -0.8
554,816 - -2.1
554,854 + -0.3
554,952 - -1.0
554,955 + -3.0
554,975 + +0.3
554,975 + +0.0
554,975 + -0.0
554,976 - +0.3
555,162 - -1.1
555,195 + -0.1
555,196 - +0.1
555,218 - +1.0
555,239 - +0.2
555,255 + -0.4
555,310 - -0.1
555,417 - -0.1
555,440 + +0.3
555,480 - +2.5
555,563 - CA264_02400 0.10 +1.6
555,564 + CA264_02400 0.10 +0.1
555,611 - CA264_02400 0.11 -0.2
555,641 + CA264_02400 0.12 -1.1
555,686 + CA264_02400 0.13 -0.3
555,687 - CA264_02400 0.13 +1.7
555,687 - CA264_02400 0.13 -1.0
555,687 - CA264_02400 0.13 -1.9
555,709 - CA264_02400 0.14 +0.1
555,733 + CA264_02400 0.14 +0.0
555,734 - CA264_02400 0.14 +0.2
555,747 + CA264_02400 0.15 +1.6
555,747 + CA264_02400 0.15 +0.9
555,756 - CA264_02400 0.15 +0.3
555,854 + CA264_02400 0.17 -1.0
555,854 + CA264_02400 0.17 -0.7
555,855 - CA264_02400 0.17 -0.1
555,868 + CA264_02400 0.17 -0.1
555,868 + CA264_02400 0.17 -0.5
555,869 - CA264_02400 0.17 -0.0
555,904 - CA264_02400 0.18 +0.1
555,918 - CA264_02400 0.18 -0.1
555,949 - CA264_02400 0.19 +0.9

Or see this region's nucleotide sequence