Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02205

Experiment: m.b. Carbenicillin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02200 and CA264_02205 are separated by 164 nucleotidesCA264_02205 and CA264_02210 are separated by 73 nucleotides CA264_02200: CA264_02200 - DEAD/DEAH box helicase, at 505,805 to 507,160 _02200 CA264_02205: CA264_02205 - EamA family transporter, at 507,325 to 508,236 _02205 CA264_02210: CA264_02210 - AI-2E family transporter, at 508,310 to 509,464 _02210 Position (kb) 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 506.402 kb on - strand, within CA264_02200at 506.433 kb on + strand, within CA264_02200at 506.478 kb on - strand, within CA264_02200at 506.480 kb on + strand, within CA264_02200at 506.480 kb on + strand, within CA264_02200at 506.480 kb on + strand, within CA264_02200at 506.481 kb on - strand, within CA264_02200at 506.484 kb on + strand, within CA264_02200at 506.484 kb on + strand, within CA264_02200at 506.485 kb on - strand, within CA264_02200at 506.485 kb on - strand, within CA264_02200at 506.485 kb on - strand, within CA264_02200at 506.485 kb on - strand, within CA264_02200at 506.485 kb on - strand, within CA264_02200at 506.587 kb on - strand, within CA264_02200at 506.613 kb on + strand, within CA264_02200at 506.635 kb on + strand, within CA264_02200at 506.678 kb on - strand, within CA264_02200at 506.678 kb on - strand, within CA264_02200at 506.762 kb on + strand, within CA264_02200at 506.762 kb on + strand, within CA264_02200at 506.763 kb on - strand, within CA264_02200at 506.789 kb on + strand, within CA264_02200at 506.789 kb on + strand, within CA264_02200at 506.790 kb on - strand, within CA264_02200at 506.833 kb on + strand, within CA264_02200at 506.834 kb on - strand, within CA264_02200at 506.938 kb on + strand, within CA264_02200at 506.974 kb on - strand, within CA264_02200at 507.158 kb on + strandat 507.165 kb on - strandat 507.243 kb on - strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.295 kb on + strandat 507.296 kb on - strandat 507.329 kb on - strandat 507.408 kb on - strandat 507.442 kb on + strand, within CA264_02205at 507.443 kb on - strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.449 kb on - strand, within CA264_02205at 507.449 kb on - strand, within CA264_02205at 507.454 kb on + strand, within CA264_02205at 507.454 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.482 kb on + strand, within CA264_02205at 507.483 kb on - strand, within CA264_02205at 507.488 kb on + strand, within CA264_02205at 507.543 kb on - strand, within CA264_02205at 507.702 kb on - strand, within CA264_02205at 507.702 kb on - strand, within CA264_02205at 507.722 kb on - strand, within CA264_02205at 507.722 kb on - strand, within CA264_02205at 507.734 kb on + strand, within CA264_02205at 507.961 kb on + strand, within CA264_02205at 507.966 kb on + strand, within CA264_02205at 508.022 kb on - strand, within CA264_02205at 508.173 kb on - strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.256 kb on - strandat 508.309 kb on + strandat 508.310 kb on - strandat 508.310 kb on - strandat 508.344 kb on + strandat 508.427 kb on - strand, within CA264_02210at 508.440 kb on + strand, within CA264_02210at 508.488 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.499 kb on - strand, within CA264_02210at 508.499 kb on - strand, within CA264_02210at 508.502 kb on - strand, within CA264_02210at 508.561 kb on - strand, within CA264_02210at 508.748 kb on - strand, within CA264_02210at 508.748 kb on - strand, within CA264_02210at 508.780 kb on + strand, within CA264_02210at 508.781 kb on - strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.798 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.857 kb on - strand, within CA264_02210at 508.937 kb on + strand, within CA264_02210at 508.938 kb on - strand, within CA264_02210at 508.940 kb on - strand, within CA264_02210at 509.033 kb on + strand, within CA264_02210at 509.034 kb on - strand, within CA264_02210at 509.108 kb on - strand, within CA264_02210at 509.172 kb on + strand, within CA264_02210at 509.173 kb on - strand, within CA264_02210at 509.175 kb on + strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.214 kb on + strand, within CA264_02210

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml
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506,402 - CA264_02200 0.44 +0.9
506,433 + CA264_02200 0.46 +0.4
506,478 - CA264_02200 0.50 +1.5
506,480 + CA264_02200 0.50 +0.9
506,480 + CA264_02200 0.50 -1.2
506,480 + CA264_02200 0.50 +0.4
506,481 - CA264_02200 0.50 -0.7
506,484 + CA264_02200 0.50 +0.3
506,484 + CA264_02200 0.50 -0.5
506,485 - CA264_02200 0.50 +0.2
506,485 - CA264_02200 0.50 -1.6
506,485 - CA264_02200 0.50 -0.8
506,485 - CA264_02200 0.50 +0.2
506,485 - CA264_02200 0.50 +0.1
506,587 - CA264_02200 0.58 +0.9
506,613 + CA264_02200 0.60 +1.9
506,635 + CA264_02200 0.61 +0.1
506,678 - CA264_02200 0.64 +0.9
506,678 - CA264_02200 0.64 -0.4
506,762 + CA264_02200 0.71 -0.7
506,762 + CA264_02200 0.71 -1.2
506,763 - CA264_02200 0.71 -1.1
506,789 + CA264_02200 0.73 -0.1
506,789 + CA264_02200 0.73 +0.1
506,790 - CA264_02200 0.73 -0.6
506,833 + CA264_02200 0.76 -0.4
506,834 - CA264_02200 0.76 +0.1
506,938 + CA264_02200 0.84 +0.6
506,974 - CA264_02200 0.86 +0.3
507,158 + +1.4
507,165 - +0.3
507,243 - +0.7
507,295 + +0.3
507,295 + -0.5
507,295 + -0.5
507,295 + +0.1
507,295 + +0.3
507,295 + -0.6
507,295 + -0.2
507,295 + -0.5
507,296 - +2.6
507,329 - -0.3
507,408 - -0.9
507,442 + CA264_02205 0.13 +0.3
507,443 - CA264_02205 0.13 -0.4
507,448 + CA264_02205 0.13 -0.9
507,448 + CA264_02205 0.13 -0.1
507,448 + CA264_02205 0.13 -1.1
507,448 + CA264_02205 0.13 -0.2
507,449 - CA264_02205 0.14 -1.0
507,449 - CA264_02205 0.14 +0.1
507,454 + CA264_02205 0.14 +0.3
507,454 + CA264_02205 0.14 +0.7
507,456 + CA264_02205 0.14 +0.7
507,456 + CA264_02205 0.14 -1.1
507,456 + CA264_02205 0.14 +0.4
507,457 - CA264_02205 0.14 +0.9
507,457 - CA264_02205 0.14 -0.0
507,457 - CA264_02205 0.14 -0.1
507,457 - CA264_02205 0.14 +0.3
507,460 + CA264_02205 0.15 -0.1
507,460 + CA264_02205 0.15 -0.2
507,460 + CA264_02205 0.15 -0.8
507,461 - CA264_02205 0.15 +0.7
507,461 - CA264_02205 0.15 -0.4
507,461 - CA264_02205 0.15 +0.2
507,461 - CA264_02205 0.15 -0.2
507,461 - CA264_02205 0.15 +0.8
507,482 + CA264_02205 0.17 -0.6
507,483 - CA264_02205 0.17 +3.2
507,488 + CA264_02205 0.18 +0.3
507,543 - CA264_02205 0.24 -0.8
507,702 - CA264_02205 0.41 -1.1
507,702 - CA264_02205 0.41 -1.7
507,722 - CA264_02205 0.44 -0.1
507,722 - CA264_02205 0.44 +1.0
507,734 + CA264_02205 0.45 -0.5
507,961 + CA264_02205 0.70 +0.6
507,966 + CA264_02205 0.70 -0.8
508,022 - CA264_02205 0.76 +0.3
508,173 - +0.5
508,222 + -0.5
508,222 + +0.9
508,222 + +1.7
508,222 + -0.4
508,256 - -3.1
508,309 + +0.3
508,310 - +0.2
508,310 - -0.1
508,344 + -0.1
508,427 - CA264_02210 0.10 +1.3
508,440 + CA264_02210 0.11 -1.9
508,488 + CA264_02210 0.15 +1.5
508,498 + CA264_02210 0.16 -0.1
508,498 + CA264_02210 0.16 -0.7
508,498 + CA264_02210 0.16 -1.0
508,499 - CA264_02210 0.16 +0.1
508,499 - CA264_02210 0.16 +0.7
508,502 - CA264_02210 0.17 -0.3
508,561 - CA264_02210 0.22 -0.4
508,748 - CA264_02210 0.38 -0.7
508,748 - CA264_02210 0.38 +1.9
508,780 + CA264_02210 0.41 -1.1
508,781 - CA264_02210 0.41 -1.1
508,784 + CA264_02210 0.41 -1.7
508,784 + CA264_02210 0.41 -1.1
508,798 + CA264_02210 0.42 +1.3
508,856 + CA264_02210 0.47 +0.9
508,856 + CA264_02210 0.47 +0.9
508,857 - CA264_02210 0.47 -0.4
508,937 + CA264_02210 0.54 +0.9
508,938 - CA264_02210 0.54 +1.5
508,940 - CA264_02210 0.55 -1.7
509,033 + CA264_02210 0.63 +0.7
509,034 - CA264_02210 0.63 -0.2
509,108 - CA264_02210 0.69 -0.3
509,172 + CA264_02210 0.75 -0.2
509,173 - CA264_02210 0.75 -1.1
509,175 + CA264_02210 0.75 +0.7
509,176 - CA264_02210 0.75 -0.4
509,176 - CA264_02210 0.75 +0.1
509,176 - CA264_02210 0.75 +0.6
509,214 + CA264_02210 0.78 +2.5

Or see this region's nucleotide sequence