Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01975 and CA264_01980 are separated by 146 nucleotides CA264_01980 and CA264_01985 are separated by 212 nucleotides CA264_01985 and CA264_01990 are separated by 134 nucleotides CA264_01990 and CA264_01995 are separated by 73 nucleotides
CA264_01975: CA264_01975 - hypothetical protein, at 457,035 to 458,396
_01975
CA264_01980: CA264_01980 - hypothetical protein, at 458,543 to 459,172
_01980
CA264_01985: CA264_01985 - tRNA-Lys, at 459,385 to 459,460
_01985
CA264_01990: CA264_01990 - tRNA-Lys, at 459,595 to 459,670
_01990
CA264_01995: CA264_01995 - SH3 domain-containing protein, at 459,744 to 460,481
_01995
Position (kb) 459
460 Strain fitness (log2 ratio) -2
-1
0
1
2 at 458.426 kb on + strand at 458.426 kb on + strand at 458.475 kb on - strand at 458.506 kb on - strand at 458.516 kb on + strand at 458.516 kb on + strand at 458.630 kb on + strand, within CA264_01980 at 458.631 kb on - strand, within CA264_01980 at 458.631 kb on - strand, within CA264_01980 at 458.650 kb on + strand, within CA264_01980 at 458.651 kb on - strand, within CA264_01980 at 458.687 kb on + strand, within CA264_01980 at 458.727 kb on - strand, within CA264_01980 at 458.727 kb on - strand, within CA264_01980 at 458.772 kb on - strand, within CA264_01980 at 458.772 kb on - strand, within CA264_01980 at 458.774 kb on - strand, within CA264_01980 at 458.799 kb on + strand, within CA264_01980 at 458.838 kb on + strand, within CA264_01980 at 458.907 kb on + strand, within CA264_01980 at 458.990 kb on + strand, within CA264_01980 at 458.991 kb on - strand, within CA264_01980 at 459.083 kb on - strand, within CA264_01980 at 459.085 kb on - strand, within CA264_01980 at 459.159 kb on - strand at 459.160 kb on + strand at 459.185 kb on - strand at 459.277 kb on + strand at 459.420 kb on - strand, within CA264_01985 at 459.425 kb on - strand, within CA264_01985 at 459.635 kb on - strand, within CA264_01990 at 459.643 kb on - strand, within CA264_01990 at 459.683 kb on - strand at 459.842 kb on + strand, within CA264_01995 at 459.894 kb on + strand, within CA264_01995 at 459.895 kb on - strand, within CA264_01995 at 459.954 kb on + strand, within CA264_01995 at 459.993 kb on + strand, within CA264_01995 at 459.993 kb on + strand, within CA264_01995 at 459.996 kb on + strand, within CA264_01995 at 460.011 kb on + strand, within CA264_01995 at 460.012 kb on - strand, within CA264_01995 at 460.012 kb on - strand, within CA264_01995 at 460.075 kb on + strand, within CA264_01995 at 460.075 kb on + strand, within CA264_01995 at 460.089 kb on + strand, within CA264_01995 at 460.090 kb on - strand, within CA264_01995 at 460.131 kb on + strand, within CA264_01995 at 460.131 kb on + strand, within CA264_01995 at 460.131 kb on + strand, within CA264_01995 at 460.131 kb on + strand, within CA264_01995 at 460.132 kb on - strand, within CA264_01995 at 460.132 kb on - strand, within CA264_01995 at 460.132 kb on - strand, within CA264_01995 at 460.184 kb on + strand, within CA264_01995 at 460.184 kb on + strand, within CA264_01995 at 460.191 kb on - strand, within CA264_01995 at 460.242 kb on - strand, within CA264_01995 at 460.283 kb on - strand, within CA264_01995 at 460.446 kb on + strand at 460.447 kb on - strand at 460.447 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 458,426 + -0.0 458,426 + -0.5 458,475 - -0.6 458,506 - -0.2 458,516 + +0.7 458,516 + +0.1 458,630 + CA264_01980 0.14 -0.2 458,631 - CA264_01980 0.14 -0.1 458,631 - CA264_01980 0.14 +0.4 458,650 + CA264_01980 0.17 -0.3 458,651 - CA264_01980 0.17 -1.9 458,687 + CA264_01980 0.23 -0.5 458,727 - CA264_01980 0.29 -0.7 458,727 - CA264_01980 0.29 -0.6 458,772 - CA264_01980 0.36 -1.4 458,772 - CA264_01980 0.36 -1.0 458,774 - CA264_01980 0.37 +1.0 458,799 + CA264_01980 0.41 +1.1 458,838 + CA264_01980 0.47 -0.4 458,907 + CA264_01980 0.58 -0.0 458,990 + CA264_01980 0.71 -1.1 458,991 - CA264_01980 0.71 -1.7 459,083 - CA264_01980 0.86 -1.1 459,085 - CA264_01980 0.86 -0.5 459,159 - -0.9 459,160 + +0.4 459,185 - +0.6 459,277 + +0.3 459,420 - CA264_01985 0.46 -1.4 459,425 - CA264_01985 0.53 -2.2 459,635 - CA264_01990 0.53 +1.1 459,643 - CA264_01990 0.63 -0.4 459,683 - -0.7 459,842 + CA264_01995 0.13 +0.2 459,894 + CA264_01995 0.20 +0.8 459,895 - CA264_01995 0.20 -0.0 459,954 + CA264_01995 0.28 +1.7 459,993 + CA264_01995 0.34 +0.7 459,993 + CA264_01995 0.34 +0.3 459,996 + CA264_01995 0.34 +0.7 460,011 + CA264_01995 0.36 +0.6 460,012 - CA264_01995 0.36 +1.4 460,012 - CA264_01995 0.36 +0.5 460,075 + CA264_01995 0.45 -1.0 460,075 + CA264_01995 0.45 +1.0 460,089 + CA264_01995 0.47 +0.8 460,090 - CA264_01995 0.47 +0.7 460,131 + CA264_01995 0.52 +2.0 460,131 + CA264_01995 0.52 +0.6 460,131 + CA264_01995 0.52 +0.7 460,131 + CA264_01995 0.52 +0.6 460,132 - CA264_01995 0.53 +0.7 460,132 - CA264_01995 0.53 +0.5 460,132 - CA264_01995 0.53 +0.9 460,184 + CA264_01995 0.60 +0.7 460,184 + CA264_01995 0.60 -1.7 460,191 - CA264_01995 0.61 +1.2 460,242 - CA264_01995 0.67 +0.7 460,283 - CA264_01995 0.73 +1.3 460,446 + -0.6 460,447 - +0.4 460,447 - +0.7
Or see this region's nucleotide sequence