Experiment: m.b. Carbenicillin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01860 and CA264_01865 are separated by 385 nucleotides CA264_01865 and CA264_01870 are separated by 104 nucleotides
CA264_01860: CA264_01860 - hypothetical protein, at 434,398 to 435,303
_01860
CA264_01865: CA264_01865 - polyisoprenoid-binding protein, at 435,689 to 436,225
_01865
CA264_01870: CA264_01870 - hypothetical protein, at 436,330 to 437,229
_01870
Position (kb) 435
436
437 Strain fitness (log2 ratio) -2
-1
0
1
2 at 434.867 kb on + strand, within CA264_01860 at 434.872 kb on + strand, within CA264_01860 at 434.872 kb on + strand, within CA264_01860 at 434.873 kb on - strand, within CA264_01860 at 434.873 kb on - strand, within CA264_01860 at 434.873 kb on - strand, within CA264_01860 at 434.948 kb on + strand, within CA264_01860 at 434.970 kb on - strand, within CA264_01860 at 435.029 kb on - strand, within CA264_01860 at 435.058 kb on + strand, within CA264_01860 at 435.073 kb on + strand, within CA264_01860 at 435.117 kb on + strand, within CA264_01860 at 435.127 kb on + strand, within CA264_01860 at 435.127 kb on + strand, within CA264_01860 at 435.127 kb on + strand, within CA264_01860 at 435.128 kb on - strand, within CA264_01860 at 435.129 kb on + strand, within CA264_01860 at 435.144 kb on + strand, within CA264_01860 at 435.153 kb on + strand, within CA264_01860 at 435.185 kb on + strand, within CA264_01860 at 435.186 kb on - strand, within CA264_01860 at 435.251 kb on + strand at 435.257 kb on - strand at 435.272 kb on + strand at 435.326 kb on - strand at 435.368 kb on + strand at 435.373 kb on + strand at 435.439 kb on - strand at 435.494 kb on - strand at 435.494 kb on - strand at 435.505 kb on + strand at 435.506 kb on - strand at 435.529 kb on - strand at 435.532 kb on - strand at 435.584 kb on + strand at 435.626 kb on + strand at 435.688 kb on + strand at 435.688 kb on + strand at 435.689 kb on - strand at 435.732 kb on + strand at 435.739 kb on + strand at 435.740 kb on - strand at 435.777 kb on - strand, within CA264_01865 at 435.788 kb on + strand, within CA264_01865 at 435.791 kb on - strand, within CA264_01865 at 436.120 kb on + strand, within CA264_01865 at 436.239 kb on + strand at 436.239 kb on + strand at 436.239 kb on + strand at 436.240 kb on - strand at 436.240 kb on - strand at 436.245 kb on + strand at 436.245 kb on + strand at 436.245 kb on + strand at 436.246 kb on - strand at 436.255 kb on + strand at 436.280 kb on - strand at 436.341 kb on - strand at 436.391 kb on + strand at 436.391 kb on + strand at 436.391 kb on + strand at 436.392 kb on - strand at 436.481 kb on + strand, within CA264_01870 at 436.482 kb on - strand, within CA264_01870 at 436.482 kb on - strand, within CA264_01870 at 436.482 kb on - strand, within CA264_01870 at 436.495 kb on - strand, within CA264_01870 at 436.519 kb on - strand, within CA264_01870 at 436.635 kb on - strand, within CA264_01870 at 436.635 kb on - strand, within CA264_01870 at 436.635 kb on - strand, within CA264_01870 at 436.639 kb on + strand, within CA264_01870 at 436.649 kb on + strand, within CA264_01870 at 436.650 kb on - strand, within CA264_01870 at 436.664 kb on - strand, within CA264_01870 at 436.664 kb on - strand, within CA264_01870 at 436.664 kb on - strand, within CA264_01870 at 436.664 kb on - strand, within CA264_01870 at 436.847 kb on - strand, within CA264_01870 at 436.876 kb on + strand, within CA264_01870 at 436.877 kb on - strand, within CA264_01870 at 436.877 kb on - strand, within CA264_01870 at 436.877 kb on - strand, within CA264_01870 at 436.878 kb on + strand, within CA264_01870 at 436.879 kb on - strand, within CA264_01870 at 436.882 kb on - strand, within CA264_01870 at 436.924 kb on + strand, within CA264_01870 at 436.925 kb on - strand at 436.925 kb on - strand, within CA264_01870 at 437.139 kb on - strand, within CA264_01870
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0004 mg/ml remove 434,867 + CA264_01860 0.52 +0.2 434,872 + CA264_01860 0.52 -0.1 434,872 + CA264_01860 0.52 +1.5 434,873 - CA264_01860 0.52 +1.5 434,873 - CA264_01860 0.52 -1.4 434,873 - CA264_01860 0.52 -0.8 434,948 + CA264_01860 0.61 -0.0 434,970 - CA264_01860 0.63 -0.0 435,029 - CA264_01860 0.70 -1.4 435,058 + CA264_01860 0.73 +0.8 435,073 + CA264_01860 0.75 -0.1 435,117 + CA264_01860 0.79 +2.3 435,127 + CA264_01860 0.80 +1.2 435,127 + CA264_01860 0.80 -0.7 435,127 + CA264_01860 0.80 +0.6 435,128 - CA264_01860 0.81 +0.6 435,129 + CA264_01860 0.81 +0.0 435,144 + CA264_01860 0.82 -0.5 435,153 + CA264_01860 0.83 +0.2 435,185 + CA264_01860 0.87 -0.1 435,186 - CA264_01860 0.87 +1.0 435,251 + -0.6 435,257 - +0.3 435,272 + -0.5 435,326 - -0.1 435,368 + +1.5 435,373 + +0.0 435,439 - -0.4 435,494 - +1.0 435,494 - -0.9 435,505 + +0.7 435,506 - -0.9 435,529 - -0.2 435,532 - -0.4 435,584 + +0.3 435,626 + -0.2 435,688 + +0.2 435,688 + -0.0 435,689 - +0.2 435,732 + +0.0 435,739 + +0.1 435,740 - -0.2 435,777 - CA264_01865 0.16 -0.4 435,788 + CA264_01865 0.18 -1.8 435,791 - CA264_01865 0.19 -0.6 436,120 + CA264_01865 0.80 -1.6 436,239 + -0.2 436,239 + -1.0 436,239 + -1.4 436,240 - -1.0 436,240 - +1.0 436,245 + -2.0 436,245 + +0.3 436,245 + -0.7 436,246 - +1.7 436,255 + +0.5 436,280 - -0.2 436,341 - +0.2 436,391 + +0.9 436,391 + +0.4 436,391 + +0.0 436,392 - -0.4 436,481 + CA264_01870 0.17 -0.9 436,482 - CA264_01870 0.17 -0.1 436,482 - CA264_01870 0.17 -0.1 436,482 - CA264_01870 0.17 +0.3 436,495 - CA264_01870 0.18 -0.5 436,519 - CA264_01870 0.21 +0.6 436,635 - CA264_01870 0.34 -0.2 436,635 - CA264_01870 0.34 -1.4 436,635 - CA264_01870 0.34 +0.1 436,639 + CA264_01870 0.34 +0.1 436,649 + CA264_01870 0.35 -1.5 436,650 - CA264_01870 0.36 +0.9 436,664 - CA264_01870 0.37 +0.2 436,664 - CA264_01870 0.37 -0.3 436,664 - CA264_01870 0.37 +0.5 436,664 - CA264_01870 0.37 -0.6 436,847 - CA264_01870 0.57 -0.7 436,876 + CA264_01870 0.61 +0.3 436,877 - CA264_01870 0.61 -0.3 436,877 - CA264_01870 0.61 +0.0 436,877 - CA264_01870 0.61 +1.1 436,878 + CA264_01870 0.61 -0.6 436,879 - CA264_01870 0.61 -1.9 436,882 - CA264_01870 0.61 -0.8 436,924 + CA264_01870 0.66 +0.6 436,925 - -0.6 436,925 - CA264_01870 0.66 +0.6 437,139 - CA264_01870 0.90 -2.0
Or see this region's nucleotide sequence