Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_628 and PfGW456L13_629 are separated by 1 nucleotides PfGW456L13_629 and PfGW456L13_630 are separated by 74 nucleotides PfGW456L13_630 and PfGW456L13_631 are separated by 54 nucleotides
PfGW456L13_628 - ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C, at 718,051 to 718,989
_628
PfGW456L13_629 - ABC transporter ATP-binding protein USSDB6B, at 718,991 to 719,716
_629
PfGW456L13_630 - ABC-type transport system involved in resistance to organic solvents, permease component USSDB6A, at 719,791 to 720,939
_630
PfGW456L13_631 - membrane protein, putative, at 720,994 to 721,932
_631
Position (kb) 719
720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.814 kb on + strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.815 kb on - strand, within PfGW456L13_628 at 718.819 kb on + strand, within PfGW456L13_628 at 718.819 kb on + strand, within PfGW456L13_628 at 718.820 kb on - strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.827 kb on + strand, within PfGW456L13_628 at 718.828 kb on - strand, within PfGW456L13_628 at 718.828 kb on - strand, within PfGW456L13_628 at 718.871 kb on + strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.872 kb on - strand, within PfGW456L13_628 at 718.912 kb on + strand at 718.912 kb on + strand at 718.913 kb on - strand at 718.913 kb on - strand at 718.913 kb on - strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.966 kb on + strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 718.967 kb on - strand at 719.052 kb on + strand at 719.052 kb on + strand at 719.052 kb on + strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.053 kb on - strand at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.154 kb on + strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.155 kb on - strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.358 kb on + strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.359 kb on - strand, within PfGW456L13_629 at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.688 kb on + strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 719.689 kb on - strand at 720.039 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.641 kb on + strand, within PfGW456L13_630 at 720.642 kb on - strand, within PfGW456L13_630 at 720.939 kb on + strand at 720.939 kb on + strand at 720.939 kb on + strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.940 kb on - strand at 720.963 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.973 kb on + strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.974 kb on - strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.977 kb on + strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.978 kb on - strand at 720.980 kb on + strand at 720.980 kb on + strand at 720.981 kb on - strand at 720.995 kb on + strand at 720.996 kb on - strand at 721.074 kb on + strand at 721.087 kb on - strand at 721.185 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.208 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.250 kb on + strand, within PfGW456L13_631 at 721.251 kb on - strand, within PfGW456L13_631 at 721.251 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.257 kb on - strand, within PfGW456L13_631 at 721.332 kb on + strand, within PfGW456L13_631 at 721.332 kb on + strand, within PfGW456L13_631 at 721.333 kb on - strand, within PfGW456L13_631 at 721.419 kb on + strand, within PfGW456L13_631 at 721.419 kb on + strand, within PfGW456L13_631 at 721.420 kb on - strand, within PfGW456L13_631 at 721.420 kb on - strand, within PfGW456L13_631 at 721.449 kb on + strand, within PfGW456L13_631 at 721.449 kb on + strand, within PfGW456L13_631 at 721.500 kb on + strand, within PfGW456L13_631 at 721.500 kb on + strand, within PfGW456L13_631 at 721.501 kb on - strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.631 kb on + strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.632 kb on - strand, within PfGW456L13_631 at 721.634 kb on + strand, within PfGW456L13_631 at 721.634 kb on + strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631 at 721.635 kb on - strand, within PfGW456L13_631
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 718,814 + PfGW456L13_628 0.81 +0.4 718,814 + PfGW456L13_628 0.81 +0.9 718,814 + PfGW456L13_628 0.81 -2.5 718,814 + PfGW456L13_628 0.81 +0.1 718,815 - PfGW456L13_628 0.81 +0.4 718,815 - PfGW456L13_628 0.81 +1.6 718,815 - PfGW456L13_628 0.81 -0.3 718,815 - PfGW456L13_628 0.81 +0.8 718,815 - PfGW456L13_628 0.81 +1.7 718,815 - PfGW456L13_628 0.81 -0.4 718,819 + PfGW456L13_628 0.82 +0.4 718,819 + PfGW456L13_628 0.82 -0.1 718,820 - PfGW456L13_628 0.82 -0.4 718,827 + PfGW456L13_628 0.83 -2.1 718,827 + PfGW456L13_628 0.83 +0.2 718,827 + PfGW456L13_628 0.83 +0.7 718,828 - PfGW456L13_628 0.83 -0.3 718,828 - PfGW456L13_628 0.83 -0.0 718,871 + PfGW456L13_628 0.87 -2.0 718,872 - PfGW456L13_628 0.87 +0.1 718,872 - PfGW456L13_628 0.87 -0.5 718,872 - PfGW456L13_628 0.87 +0.4 718,912 + -1.8 718,912 + +1.5 718,913 - -1.3 718,913 - +0.3 718,913 - -1.2 718,966 + -0.0 718,966 + +0.2 718,966 + -0.8 718,966 + +0.4 718,966 + +0.2 718,966 + -2.0 718,967 - -0.1 718,967 - +1.2 718,967 - +0.5 718,967 - -0.5 718,967 - +1.2 718,967 - +0.4 718,967 - -0.3 718,967 - +0.5 718,967 - -0.5 718,967 - -0.2 718,967 - +0.4 718,967 - +0.5 718,967 - -0.3 718,967 - -0.3 718,967 - +0.5 719,052 + +0.7 719,052 + -1.9 719,052 + +0.6 719,053 - +0.1 719,053 - +0.1 719,053 - +0.6 719,053 - +0.1 719,154 + PfGW456L13_629 0.22 +0.1 719,154 + PfGW456L13_629 0.22 +0.3 719,154 + PfGW456L13_629 0.22 -0.7 719,154 + PfGW456L13_629 0.22 -0.4 719,155 - PfGW456L13_629 0.23 -0.9 719,155 - PfGW456L13_629 0.23 -0.1 719,155 - PfGW456L13_629 0.23 -3.1 719,358 + PfGW456L13_629 0.51 -0.7 719,358 + PfGW456L13_629 0.51 +2.1 719,358 + PfGW456L13_629 0.51 -1.1 719,359 - PfGW456L13_629 0.51 +0.2 719,359 - PfGW456L13_629 0.51 -0.5 719,359 - PfGW456L13_629 0.51 +0.0 719,359 - PfGW456L13_629 0.51 +0.6 719,359 - PfGW456L13_629 0.51 -1.3 719,688 + -0.4 719,688 + -0.3 719,688 + +1.8 719,688 + +1.4 719,688 + -0.8 719,689 - +0.8 719,689 - -0.6 719,689 - +0.5 719,689 - +0.7 719,689 - +0.7 719,689 - +0.4 719,689 - +0.3 720,039 + PfGW456L13_630 0.22 -0.4 720,641 + PfGW456L13_630 0.74 +1.3 720,641 + PfGW456L13_630 0.74 -0.1 720,641 + PfGW456L13_630 0.74 -0.2 720,642 - PfGW456L13_630 0.74 -1.0 720,939 + -1.5 720,939 + +0.8 720,939 + -1.3 720,940 - +0.6 720,940 - -0.6 720,940 - +0.8 720,940 - +0.0 720,940 - -0.6 720,940 - -0.5 720,963 + +0.2 720,973 + -0.3 720,973 + -0.9 720,973 + -0.8 720,974 - +0.7 720,974 - -0.0 720,974 - +0.7 720,974 - +1.2 720,974 - -0.7 720,974 - -0.9 720,977 + +0.8 720,977 + -0.6 720,977 + +0.3 720,977 + -0.4 720,977 + -0.3 720,977 + -0.5 720,977 + +0.2 720,978 - +1.1 720,978 - +0.0 720,978 - -0.2 720,978 - -3.1 720,978 - -0.9 720,978 - +0.9 720,978 - +0.3 720,980 + -1.0 720,980 + +0.7 720,981 - +0.5 720,995 + +0.3 720,996 - +0.2 721,074 + +1.1 721,087 - +0.5 721,185 + PfGW456L13_631 0.20 +0.4 721,208 + PfGW456L13_631 0.23 -0.8 721,208 + PfGW456L13_631 0.23 -1.1 721,208 + PfGW456L13_631 0.23 -0.1 721,208 + PfGW456L13_631 0.23 +1.1 721,208 + PfGW456L13_631 0.23 -0.5 721,250 + PfGW456L13_631 0.27 -1.3 721,250 + PfGW456L13_631 0.27 -0.5 721,250 + PfGW456L13_631 0.27 -2.3 721,250 + PfGW456L13_631 0.27 +0.2 721,251 - PfGW456L13_631 0.27 -1.3 721,251 - PfGW456L13_631 0.27 -0.6 721,257 - PfGW456L13_631 0.28 +0.4 721,257 - PfGW456L13_631 0.28 -1.7 721,257 - PfGW456L13_631 0.28 +0.2 721,257 - PfGW456L13_631 0.28 +0.7 721,332 + PfGW456L13_631 0.36 -0.8 721,332 + PfGW456L13_631 0.36 +0.6 721,333 - PfGW456L13_631 0.36 +0.4 721,419 + PfGW456L13_631 0.45 -0.3 721,419 + PfGW456L13_631 0.45 -0.1 721,420 - PfGW456L13_631 0.45 -0.6 721,420 - PfGW456L13_631 0.45 +0.2 721,449 + PfGW456L13_631 0.48 +0.1 721,449 + PfGW456L13_631 0.48 +0.0 721,500 + PfGW456L13_631 0.54 +0.3 721,500 + PfGW456L13_631 0.54 +1.8 721,501 - PfGW456L13_631 0.54 +0.5 721,631 + PfGW456L13_631 0.68 -0.1 721,631 + PfGW456L13_631 0.68 +0.2 721,631 + PfGW456L13_631 0.68 -0.2 721,631 + PfGW456L13_631 0.68 -0.1 721,631 + PfGW456L13_631 0.68 +0.1 721,631 + PfGW456L13_631 0.68 -0.7 721,631 + PfGW456L13_631 0.68 +2.0 721,631 + PfGW456L13_631 0.68 +0.4 721,631 + PfGW456L13_631 0.68 +0.7 721,632 - PfGW456L13_631 0.68 +0.5 721,632 - PfGW456L13_631 0.68 -0.1 721,632 - PfGW456L13_631 0.68 +0.2 721,632 - PfGW456L13_631 0.68 -0.6 721,632 - PfGW456L13_631 0.68 +0.7 721,634 + PfGW456L13_631 0.68 -0.4 721,634 + PfGW456L13_631 0.68 +0.3 721,635 - PfGW456L13_631 0.68 +0.3 721,635 - PfGW456L13_631 0.68 -0.0 721,635 - PfGW456L13_631 0.68 -0.1 721,635 - PfGW456L13_631 0.68 -0.3
Or see this region's nucleotide sequence