Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4880 and PfGW456L13_4881 are separated by 64 nucleotides PfGW456L13_4881 and PfGW456L13_4882 are separated by 43 nucleotides PfGW456L13_4882 and PfGW456L13_4883 overlap by 4 nucleotides
PfGW456L13_4880 - Protein-export membrane protein SecD (TC 3.A.5.1.1), at 5,443,846 to 5,445,714
_4880
PfGW456L13_4881 - Preprotein translocase subunit YajC (TC 3.A.5.1.1), at 5,445,779 to 5,446,114
_4881
PfGW456L13_4882 - tRNA-guanine transglycosylase (EC 2.4.2.29), at 5,446,158 to 5,447,291
_4882
PfGW456L13_4883 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 5,447,288 to 5,448,352
_4883
Position (kb) 5446
5447
5448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5445.781 kb on - strand at 5445.781 kb on - strand at 5445.781 kb on - strand at 5445.781 kb on - strand at 5445.781 kb on - strand at 5445.781 kb on - strand at 5446.117 kb on - strand at 5446.154 kb on - strand at 5446.154 kb on - strand at 5446.196 kb on - strand at 5446.224 kb on - strand at 5446.290 kb on - strand, within PfGW456L13_4882 at 5446.290 kb on - strand, within PfGW456L13_4882 at 5446.365 kb on - strand, within PfGW456L13_4882 at 5446.367 kb on - strand, within PfGW456L13_4882 at 5446.367 kb on - strand, within PfGW456L13_4882 at 5446.550 kb on + strand, within PfGW456L13_4882 at 5446.592 kb on - strand, within PfGW456L13_4882 at 5447.170 kb on + strand, within PfGW456L13_4882 at 5447.171 kb on - strand, within PfGW456L13_4882 at 5447.171 kb on - strand, within PfGW456L13_4882 at 5447.273 kb on + strand at 5447.274 kb on - strand at 5447.274 kb on - strand at 5447.274 kb on - strand at 5447.291 kb on + strand at 5447.291 kb on + strand at 5447.292 kb on - strand at 5447.339 kb on - strand at 5447.339 kb on - strand at 5447.339 kb on - strand at 5447.521 kb on - strand, within PfGW456L13_4883 at 5447.906 kb on + strand, within PfGW456L13_4883 at 5447.906 kb on + strand, within PfGW456L13_4883 at 5447.906 kb on + strand, within PfGW456L13_4883 at 5447.907 kb on - strand, within PfGW456L13_4883 at 5447.908 kb on + strand, within PfGW456L13_4883 at 5447.908 kb on + strand, within PfGW456L13_4883 at 5447.908 kb on + strand, within PfGW456L13_4883 at 5447.909 kb on - strand, within PfGW456L13_4883 at 5447.909 kb on - strand, within PfGW456L13_4883 at 5447.910 kb on + strand, within PfGW456L13_4883 at 5447.910 kb on + strand, within PfGW456L13_4883 at 5447.910 kb on + strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5447.911 kb on - strand, within PfGW456L13_4883 at 5448.278 kb on - strand at 5448.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 5,445,781 - -0.2 5,445,781 - +0.1 5,445,781 - -1.5 5,445,781 - -1.7 5,445,781 - +0.6 5,445,781 - -0.5 5,446,117 - -1.5 5,446,154 - -2.0 5,446,154 - -0.2 5,446,196 - -2.6 5,446,224 - -0.1 5,446,290 - PfGW456L13_4882 0.12 -1.8 5,446,290 - PfGW456L13_4882 0.12 -2.0 5,446,365 - PfGW456L13_4882 0.18 -1.5 5,446,367 - PfGW456L13_4882 0.18 -0.9 5,446,367 - PfGW456L13_4882 0.18 -0.9 5,446,550 + PfGW456L13_4882 0.35 -0.4 5,446,592 - PfGW456L13_4882 0.38 -0.2 5,447,170 + PfGW456L13_4882 0.89 +0.7 5,447,171 - PfGW456L13_4882 0.89 +0.1 5,447,171 - PfGW456L13_4882 0.89 -0.9 5,447,273 + +0.6 5,447,274 - -1.9 5,447,274 - +0.4 5,447,274 - -0.7 5,447,291 + +0.1 5,447,291 + -1.4 5,447,292 - +1.1 5,447,339 - +0.2 5,447,339 - +1.1 5,447,339 - +0.3 5,447,521 - PfGW456L13_4883 0.22 +2.7 5,447,906 + PfGW456L13_4883 0.58 +1.1 5,447,906 + PfGW456L13_4883 0.58 -1.2 5,447,906 + PfGW456L13_4883 0.58 -1.9 5,447,907 - PfGW456L13_4883 0.58 -0.4 5,447,908 + PfGW456L13_4883 0.58 +1.9 5,447,908 + PfGW456L13_4883 0.58 -0.6 5,447,908 + PfGW456L13_4883 0.58 +1.5 5,447,909 - PfGW456L13_4883 0.58 +0.8 5,447,909 - PfGW456L13_4883 0.58 -2.0 5,447,910 + PfGW456L13_4883 0.58 -2.2 5,447,910 + PfGW456L13_4883 0.58 +0.7 5,447,910 + PfGW456L13_4883 0.58 -1.0 5,447,911 - PfGW456L13_4883 0.58 -0.1 5,447,911 - PfGW456L13_4883 0.58 -1.9 5,447,911 - PfGW456L13_4883 0.58 +1.1 5,447,911 - PfGW456L13_4883 0.58 -1.5 5,447,911 - PfGW456L13_4883 0.58 -2.2 5,447,911 - PfGW456L13_4883 0.58 -1.9 5,447,911 - PfGW456L13_4883 0.58 +0.6 5,448,278 - +1.1 5,448,278 - -1.4
Or see this region's nucleotide sequence