Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4843

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4842 and PfGW456L13_4843 are separated by 171 nucleotidesPfGW456L13_4843 and PfGW456L13_4844 overlap by 8 nucleotides PfGW456L13_4842 - Translation elongation factor LepA, at 5,409,372 to 5,411,171 _4842 PfGW456L13_4843 - FIG000906: Predicted Permease, at 5,411,343 to 5,412,404 _4843 PfGW456L13_4844 - FIG000988: Predicted permease, at 5,412,397 to 5,413,515 _4844 Position (kb) 5411 5412 5413Strain fitness (log2 ratio) -2 -1 0 1at 5410.462 kb on - strand, within PfGW456L13_4842at 5410.976 kb on - strand, within PfGW456L13_4842at 5411.229 kb on - strandat 5411.276 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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5,410,462 - PfGW456L13_4842 0.61 -0.5
5,410,976 - PfGW456L13_4842 0.89 -2.2
5,411,229 - +1.5
5,411,276 - -1.0

Or see this region's nucleotide sequence