Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4677

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4675 and PfGW456L13_4676 are separated by 238 nucleotidesPfGW456L13_4676 and PfGW456L13_4677 are separated by 498 nucleotidesPfGW456L13_4677 and PfGW456L13_4678 overlap by 1 nucleotidesPfGW456L13_4678 and PfGW456L13_4679 overlap by 13 nucleotides PfGW456L13_4675 - Lipoprotein NlpD, at 5,214,529 to 5,214,729 _4675 PfGW456L13_4676 - hypothetical protein, at 5,214,968 to 5,215,099 _4676 PfGW456L13_4677 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,215,598 to 5,216,275 _4677 PfGW456L13_4678 - 5-nucleotidase SurE (EC 3.1.3.5) @ Exopolyphosphatase (EC 3.6.1.11), at 5,216,275 to 5,217,024 _4678 PfGW456L13_4679 - tRNA pseudouridine 13 synthase (EC 4.2.1.-), at 5,217,012 to 5,218,070 _4679 Position (kb) 5215 5216 5217Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5215.354 kb on - strandat 5215.360 kb on - strandat 5215.360 kb on - strandat 5215.360 kb on - strandat 5215.360 kb on - strandat 5215.452 kb on - strandat 5215.472 kb on + strandat 5215.473 kb on - strandat 5215.478 kb on + strandat 5215.534 kb on - strandat 5215.553 kb on - strandat 5215.553 kb on - strandat 5215.553 kb on - strandat 5215.767 kb on - strand, within PfGW456L13_4677at 5215.803 kb on + strand, within PfGW456L13_4677at 5215.803 kb on + strand, within PfGW456L13_4677at 5215.804 kb on - strand, within PfGW456L13_4677at 5215.804 kb on - strand, within PfGW456L13_4677at 5215.804 kb on - strand, within PfGW456L13_4677at 5215.804 kb on - strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.044 kb on + strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.045 kb on - strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.046 kb on + strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.047 kb on - strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.097 kb on + strand, within PfGW456L13_4677at 5216.098 kb on - strand, within PfGW456L13_4677at 5216.190 kb on + strand, within PfGW456L13_4677at 5216.254 kb on + strandat 5216.254 kb on + strandat 5216.255 kb on - strandat 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.360 kb on + strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.361 kb on - strand, within PfGW456L13_4678at 5216.558 kb on - strand, within PfGW456L13_4678at 5216.638 kb on + strand, within PfGW456L13_4678at 5216.638 kb on + strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.639 kb on - strand, within PfGW456L13_4678at 5216.721 kb on - strand, within PfGW456L13_4678at 5216.844 kb on + strand, within PfGW456L13_4678at 5216.949 kb on - strand, within PfGW456L13_4678at 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.966 kb on + strandat 5216.967 kb on - strandat 5216.967 kb on - strandat 5216.967 kb on - strandat 5217.007 kb on - strandat 5217.018 kb on + strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.019 kb on - strandat 5217.076 kb on - strandat 5217.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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5,215,354 - +0.3
5,215,360 - -0.9
5,215,360 - -0.6
5,215,360 - +1.3
5,215,360 - -0.4
5,215,452 - -3.2
5,215,472 + +0.4
5,215,473 - -2.3
5,215,478 + -1.3
5,215,534 - -2.5
5,215,553 - -2.9
5,215,553 - +1.4
5,215,553 - -1.7
5,215,767 - PfGW456L13_4677 0.25 +0.5
5,215,803 + PfGW456L13_4677 0.30 -0.0
5,215,803 + PfGW456L13_4677 0.30 -0.3
5,215,804 - PfGW456L13_4677 0.30 -1.6
5,215,804 - PfGW456L13_4677 0.30 -1.6
5,215,804 - PfGW456L13_4677 0.30 -2.5
5,215,804 - PfGW456L13_4677 0.30 -1.5
5,216,044 + PfGW456L13_4677 0.66 -1.2
5,216,044 + PfGW456L13_4677 0.66 -2.2
5,216,044 + PfGW456L13_4677 0.66 -2.1
5,216,044 + PfGW456L13_4677 0.66 +0.2
5,216,044 + PfGW456L13_4677 0.66 -0.4
5,216,044 + PfGW456L13_4677 0.66 -5.0
5,216,044 + PfGW456L13_4677 0.66 -3.0
5,216,044 + PfGW456L13_4677 0.66 -0.1
5,216,044 + PfGW456L13_4677 0.66 -1.0
5,216,044 + PfGW456L13_4677 0.66 -2.0
5,216,044 + PfGW456L13_4677 0.66 -1.3
5,216,044 + PfGW456L13_4677 0.66 -1.2
5,216,044 + PfGW456L13_4677 0.66 -2.0
5,216,044 + PfGW456L13_4677 0.66 -0.9
5,216,044 + PfGW456L13_4677 0.66 -0.8
5,216,044 + PfGW456L13_4677 0.66 -4.2
5,216,044 + PfGW456L13_4677 0.66 -2.8
5,216,045 - PfGW456L13_4677 0.66 -1.2
5,216,045 - PfGW456L13_4677 0.66 -1.6
5,216,045 - PfGW456L13_4677 0.66 -1.0
5,216,045 - PfGW456L13_4677 0.66 -0.8
5,216,045 - PfGW456L13_4677 0.66 -1.1
5,216,045 - PfGW456L13_4677 0.66 -0.9
5,216,045 - PfGW456L13_4677 0.66 -3.2
5,216,045 - PfGW456L13_4677 0.66 -2.3
5,216,045 - PfGW456L13_4677 0.66 -3.6
5,216,045 - PfGW456L13_4677 0.66 -1.9
5,216,045 - PfGW456L13_4677 0.66 -1.6
5,216,045 - PfGW456L13_4677 0.66 -1.6
5,216,046 + PfGW456L13_4677 0.66 -2.1
5,216,046 + PfGW456L13_4677 0.66 +1.6
5,216,046 + PfGW456L13_4677 0.66 -1.0
5,216,046 + PfGW456L13_4677 0.66 -2.3
5,216,046 + PfGW456L13_4677 0.66 -1.7
5,216,046 + PfGW456L13_4677 0.66 -0.5
5,216,046 + PfGW456L13_4677 0.66 -0.4
5,216,046 + PfGW456L13_4677 0.66 -0.3
5,216,046 + PfGW456L13_4677 0.66 -1.8
5,216,046 + PfGW456L13_4677 0.66 -2.7
5,216,046 + PfGW456L13_4677 0.66 -3.2
5,216,046 + PfGW456L13_4677 0.66 -1.0
5,216,046 + PfGW456L13_4677 0.66 -0.5
5,216,046 + PfGW456L13_4677 0.66 -0.7
5,216,046 + PfGW456L13_4677 0.66 +0.0
5,216,046 + PfGW456L13_4677 0.66 -1.0
5,216,046 + PfGW456L13_4677 0.66 -1.4
5,216,046 + PfGW456L13_4677 0.66 -1.4
5,216,046 + PfGW456L13_4677 0.66 -3.5
5,216,046 + PfGW456L13_4677 0.66 -2.3
5,216,046 + PfGW456L13_4677 0.66 -1.7
5,216,046 + PfGW456L13_4677 0.66 -1.1
5,216,046 + PfGW456L13_4677 0.66 -1.6
5,216,046 + PfGW456L13_4677 0.66 -0.8
5,216,046 + PfGW456L13_4677 0.66 -0.1
5,216,046 + PfGW456L13_4677 0.66 -3.3
5,216,046 + PfGW456L13_4677 0.66 -3.2
5,216,047 - PfGW456L13_4677 0.66 -1.8
5,216,047 - PfGW456L13_4677 0.66 -1.0
5,216,047 - PfGW456L13_4677 0.66 -3.8
5,216,047 - PfGW456L13_4677 0.66 -1.9
5,216,047 - PfGW456L13_4677 0.66 -0.9
5,216,047 - PfGW456L13_4677 0.66 -1.7
5,216,047 - PfGW456L13_4677 0.66 -0.5
5,216,047 - PfGW456L13_4677 0.66 -1.5
5,216,047 - PfGW456L13_4677 0.66 -3.1
5,216,047 - PfGW456L13_4677 0.66 -1.4
5,216,047 - PfGW456L13_4677 0.66 -1.7
5,216,047 - PfGW456L13_4677 0.66 -1.9
5,216,047 - PfGW456L13_4677 0.66 -2.3
5,216,047 - PfGW456L13_4677 0.66 -1.3
5,216,047 - PfGW456L13_4677 0.66 -3.0
5,216,047 - PfGW456L13_4677 0.66 -2.5
5,216,047 - PfGW456L13_4677 0.66 -1.0
5,216,047 - PfGW456L13_4677 0.66 -0.3
5,216,047 - PfGW456L13_4677 0.66 -1.0
5,216,047 - PfGW456L13_4677 0.66 -1.5
5,216,097 + PfGW456L13_4677 0.74 -0.6
5,216,097 + PfGW456L13_4677 0.74 -1.7
5,216,097 + PfGW456L13_4677 0.74 -0.6
5,216,098 - PfGW456L13_4677 0.74 -2.3
5,216,190 + PfGW456L13_4677 0.87 -1.8
5,216,254 + -0.5
5,216,254 + -1.4
5,216,255 - -0.7
5,216,360 + PfGW456L13_4678 0.11 -2.8
5,216,360 + PfGW456L13_4678 0.11 -2.2
5,216,360 + PfGW456L13_4678 0.11 -0.9
5,216,360 + PfGW456L13_4678 0.11 -2.7
5,216,360 + PfGW456L13_4678 0.11 -1.4
5,216,361 - PfGW456L13_4678 0.11 -0.7
5,216,361 - PfGW456L13_4678 0.11 -1.0
5,216,361 - PfGW456L13_4678 0.11 +1.2
5,216,558 - PfGW456L13_4678 0.38 -1.3
5,216,638 + PfGW456L13_4678 0.48 -1.3
5,216,638 + PfGW456L13_4678 0.48 -0.6
5,216,639 - PfGW456L13_4678 0.49 -2.3
5,216,639 - PfGW456L13_4678 0.49 -2.3
5,216,639 - PfGW456L13_4678 0.49 +0.1
5,216,721 - PfGW456L13_4678 0.59 -1.2
5,216,844 + PfGW456L13_4678 0.76 -0.5
5,216,949 - PfGW456L13_4678 0.90 -0.6
5,216,966 + -2.7
5,216,966 + -1.5
5,216,966 + -0.1
5,216,966 + -0.7
5,216,967 - -0.2
5,216,967 - -0.8
5,216,967 - -0.9
5,217,007 - -1.3
5,217,018 + -0.7
5,217,019 - -0.8
5,217,019 - -1.4
5,217,019 - -1.3
5,217,019 - +0.4
5,217,019 - -0.2
5,217,019 - -0.2
5,217,019 - -3.0
5,217,076 - +0.6
5,217,076 - -0.5

Or see this region's nucleotide sequence