Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4609

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
5,144,965	-		PfGW456L13_4607	0.68	-2.8
5,144,986	+		PfGW456L13_4607	0.84	-1.3
5,145,000	+				-1.7
5,145,000	+				-3.4
5,145,000	+				-1.6
5,145,000	+				-1.4
5,145,001	-				-1.4
5,145,001	-				-1.3
5,145,001	-				-1.5
5,145,001	-				-2.4
5,145,001	-				-0.9
5,145,048	+				-3.1
5,145,048	+				-1.9
5,145,048	+				-1.4
5,145,048	+				-1.1
5,145,048	+				-0.6
5,145,048	+				-1.5
5,145,048	+				-1.8
5,145,048	+				+0.0
5,145,048	+				-3.3
5,145,048	+				-2.8
5,145,048	+				-0.7
5,145,049	-				-0.7
5,145,049	-				+1.4
5,145,049	-				-1.2
5,145,049	-				-4.1
5,145,049	-				-0.7
5,145,049	-				-1.1
5,145,049	-				-1.7
5,145,071	+				-0.9
5,145,071	+				-4.3
5,145,071	+				+0.2
5,145,072	-				-3.4
5,145,072	-				-1.0
5,145,072	-				-2.2
5,145,081	+		PfGW456L13_4608	0.10	-1.0
5,145,123	+		PfGW456L13_4608	0.15	-1.1
5,145,123	+		PfGW456L13_4608	0.15	-3.6
5,145,123	+		PfGW456L13_4608	0.15	-3.3
5,145,123	+		PfGW456L13_4608	0.15	-1.9
5,145,123	+		PfGW456L13_4608	0.15	-2.3
5,145,123	+		PfGW456L13_4608	0.15	-2.2
5,145,123	+		PfGW456L13_4608	0.15	-1.6
5,145,123	+		PfGW456L13_4608	0.15	-1.4
5,145,124	-		PfGW456L13_4608	0.15	-2.1
5,145,124	-		PfGW456L13_4608	0.15	+0.0
5,145,124	-		PfGW456L13_4608	0.15	-2.1
5,145,124	-		PfGW456L13_4608	0.15	-1.1
5,145,124	-		PfGW456L13_4608	0.15	-2.0
5,145,124	-		PfGW456L13_4608	0.15	-0.5
5,145,124	-		PfGW456L13_4608	0.15	-3.5
5,145,124	-		PfGW456L13_4608	0.15	-1.3
5,145,138	+		PfGW456L13_4608	0.16	-1.8
5,145,138	+		PfGW456L13_4608	0.16	-0.6
5,145,139	-		PfGW456L13_4608	0.16	-2.4
5,145,139	-		PfGW456L13_4608	0.16	-0.3
5,145,139	-		PfGW456L13_4608	0.16	-1.3
5,145,139	-		PfGW456L13_4608	0.16	-3.0
5,145,139	-		PfGW456L13_4608	0.16	-0.3
5,145,139	-		PfGW456L13_4608	0.16	-2.3
5,145,232	+		PfGW456L13_4608	0.26	-4.8
5,145,232	+		PfGW456L13_4608	0.26	-2.5
5,145,233	-		PfGW456L13_4608	0.27	-2.8
5,145,233	-		PfGW456L13_4608	0.27	-0.7
5,145,233	-		PfGW456L13_4608	0.27	-1.2
5,145,243	+		PfGW456L13_4608	0.28	-1.4
5,145,250	-		PfGW456L13_4608	0.28	-2.2
5,145,447	+		PfGW456L13_4608	0.50	-4.1
5,145,448	-		PfGW456L13_4608	0.50	-3.7
5,145,448	-		PfGW456L13_4608	0.50	+0.1
5,145,448	-		PfGW456L13_4608	0.50	-1.5
5,145,448	-		PfGW456L13_4608	0.50	-2.0
5,145,579	-		PfGW456L13_4608	0.64	-1.2
5,145,663	+		PfGW456L13_4608	0.73	-2.2
5,145,664	-		PfGW456L13_4608	0.73	-0.9
5,145,772	+		PfGW456L13_4608	0.85	-0.6
5,145,803	+		PfGW456L13_4608	0.88	-0.2
5,145,819	+				-1.3
5,145,820	-				-1.4
5,145,820	-				-1.3
5,145,820	-				-2.1
5,145,907	+				-1.0
5,145,907	+				-2.0
5,145,907	+				-1.6
5,145,908	-				-1.4
5,145,908	-				-2.7
5,145,908	-				-3.5
5,145,908	-				-1.8
5,145,908	-				-1.8
5,145,913	+				-1.3
5,145,913	+				-1.1
5,145,913	+				-1.1
5,145,914	-				-2.7
5,145,914	-				-2.4
5,146,274	+		PfGW456L13_4609	0.29	-0.2
5,146,274	+		PfGW456L13_4609	0.29	-0.4
5,146,275	-		PfGW456L13_4609	0.29	-0.3
5,146,275	-		PfGW456L13_4609	0.29	-2.6
5,146,275	-		PfGW456L13_4609	0.29	-2.2
5,146,337	+		PfGW456L13_4609	0.34	-2.8
5,146,350	-		PfGW456L13_4609	0.35	-1.1
5,146,364	+		PfGW456L13_4609	0.36	-1.1
5,146,371	-		PfGW456L13_4609	0.37	-0.9
5,146,371	-		PfGW456L13_4609	0.37	-0.8
5,146,371	-		PfGW456L13_4609	0.37	-1.3
5,146,371	-		PfGW456L13_4609	0.37	-2.1
5,146,388	+		PfGW456L13_4609	0.38	-2.9
5,146,388	+		PfGW456L13_4609	0.38	-0.6
5,146,389	-		PfGW456L13_4609	0.38	-1.3
5,146,389	-		PfGW456L13_4609	0.38	-2.1
5,146,389	-		PfGW456L13_4609	0.38	-1.2
5,146,389	-		PfGW456L13_4609	0.38	-0.8
5,146,389	-		PfGW456L13_4609	0.38	-2.0
5,146,391	+		PfGW456L13_4609	0.38	-1.0
5,146,490	+		PfGW456L13_4609	0.46	-1.2
5,146,491	-		PfGW456L13_4609	0.46	-2.9
5,146,543	+		PfGW456L13_4609	0.51	-2.3
5,146,543	+		PfGW456L13_4609	0.51	-2.0
5,146,543	+		PfGW456L13_4609	0.51	-2.4
5,146,544	-		PfGW456L13_4609	0.51	-2.3
5,146,544	-		PfGW456L13_4609	0.51	-0.9
5,146,658	+		PfGW456L13_4609	0.60	-2.3
5,146,658	+		PfGW456L13_4609	0.60	-0.8
5,146,658	+		PfGW456L13_4609	0.60	-2.7
5,146,658	+		PfGW456L13_4609	0.60	-1.7
5,146,659	-		PfGW456L13_4609	0.60	-0.4
5,146,659	-		PfGW456L13_4609	0.60	+0.3
5,146,659	-		PfGW456L13_4609	0.60	-0.9
5,146,659	-		PfGW456L13_4609	0.60	-0.8
5,146,659	-		PfGW456L13_4609	0.60	-1.0
5,146,673	+		PfGW456L13_4609	0.61	-0.1
5,146,673	+		PfGW456L13_4609	0.61	-1.4
5,146,673	+		PfGW456L13_4609	0.61	-1.0
5,146,674	-		PfGW456L13_4609	0.61	-0.2
5,146,674	-		PfGW456L13_4609	0.61	-2.6
5,146,674	-		PfGW456L13_4609	0.61	-1.1
5,146,674	-		PfGW456L13_4609	0.61	-2.4
5,146,703	+		PfGW456L13_4609	0.63	-0.7
5,146,704	-		PfGW456L13_4609	0.63	-2.8
5,146,891	+		PfGW456L13_4609	0.78	-0.9
5,147,094	+				-0.8
5,147,179	-				-2.3
5,147,179	-				-1.6
5,147,183	+				-1.2
5,147,184	-				-1.2
5,147,323	+		PfGW456L13_4610	0.21	-2.3
5,147,323	+		PfGW456L13_4610	0.21	-1.0
5,147,323	+		PfGW456L13_4610	0.21	-0.2
5,147,323	+		PfGW456L13_4610	0.21	-1.1
5,147,868	+				-5.0
5,147,911	+				-2.4
5,147,926	+				-2.8
5,147,926	+				-1.6
5,147,926	+				-1.2
5,147,926	+				-3.0
5,147,926	+				-3.0
5,147,926	+				+0.5
5,147,927	-				-1.4
5,147,927	-				-0.6
5,147,927	-				+0.3
5,147,927	-				-3.2
5,147,927	-				-2.0
5,147,959	+				+0.0
5,147,959	+				-1.4
5,147,959	+				-0.8
5,147,959	+				-1.6
5,147,959	+				-1.8
5,147,959	+				+0.0
5,147,959	+				-1.7
5,147,959	+				-2.9
5,147,959	+				-2.1
5,147,959	+				-3.1
5,147,959	+				+0.6
5,147,960	-				-0.4
5,147,960	-				-0.9
5,147,960	-				+0.0
5,147,960	-				-1.8
5,147,960	-				-0.7
5,147,960	-				-0.9
5,147,960	-				-0.8
5,147,960	-				-3.1
5,147,960	-				+0.3
5,148,107	-		PfGW456L13_4611	0.25	-1.8