Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4606

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
5,142,639	+				-0.6
5,142,639	+				-0.1
5,142,639	+				-0.6
5,142,640	-				+0.8
5,142,640	-				-0.6
5,142,640	-				-0.5
5,142,640	-				+0.6
5,142,640	-				-0.0
5,142,640	-				-0.7
5,142,640	-				+0.1
5,142,640	-				-0.6
5,142,640	-				-0.3
5,142,651	+				+0.2
5,142,652	-				-1.3
5,142,673	+				-0.3
5,142,674	-				+1.0
5,142,797	-				-0.6
5,142,867	-				-0.0
5,142,925	-				-0.7
5,142,973	-				-1.1
5,143,179	-		PfGW456L13_4605	0.68	-3.0
5,143,179	-		PfGW456L13_4605	0.68	-2.5
5,143,179	-		PfGW456L13_4605	0.68	+0.2
5,143,220	-		PfGW456L13_4605	0.81	-0.5
5,143,222	+		PfGW456L13_4605	0.82	+1.6
5,143,222	+		PfGW456L13_4605	0.82	+1.4
5,143,222	+		PfGW456L13_4605	0.82	+1.3
5,143,222	+		PfGW456L13_4605	0.82	+0.6
5,143,222	+		PfGW456L13_4605	0.82	+1.6
5,143,222	+		PfGW456L13_4605	0.82	-0.1
5,143,222	+		PfGW456L13_4605	0.82	+2.1
5,143,222	+		PfGW456L13_4605	0.82	+0.7
5,143,222	+		PfGW456L13_4605	0.82	+2.3
5,143,223	-		PfGW456L13_4605	0.82	-0.6
5,143,223	-		PfGW456L13_4605	0.82	-0.1
5,143,223	-		PfGW456L13_4605	0.82	-2.3
5,143,223	-		PfGW456L13_4605	0.82	+0.2
5,143,223	-		PfGW456L13_4605	0.82	-1.7
5,143,251	+				+1.6
5,143,252	-				-0.6
5,143,261	+				+0.9
5,143,261	+				+1.8
5,143,261	+				+1.8
5,143,262	-				-3.4
5,143,262	-				-1.7
5,143,262	-				-0.5
5,143,394	+				+0.0
5,143,394	+				-0.1
5,143,394	+				+2.7
5,143,395	-				-0.2
5,143,395	-				-2.0
5,143,401	-				-1.7
5,143,401	-				-1.3
5,143,401	-				-0.8
5,143,402	+				+1.7
5,143,402	+				+1.3
5,143,402	+				+0.9
5,143,403	-				-0.1
5,143,403	-				-1.6
5,143,403	-				-1.9
5,143,403	-				-0.9
5,143,403	-				-2.7
5,143,403	-				-1.0
5,143,403	-				-1.4
5,143,516	-				-1.5
5,143,595	+				+1.2
5,143,597	+				+0.9
5,143,598	-				-1.5
5,143,598	-				+0.1
5,143,604	+				+1.3
5,143,612	+				-0.4
5,143,613	-				-0.6
5,143,613	-				-1.7
5,143,613	-				-3.7
5,143,626	+				-1.7
5,143,626	+				-0.6
5,143,626	+				-0.4
5,143,627	-				-1.9
5,143,627	-				-2.8
5,143,627	-				-1.9
5,143,633	-				-0.2
5,143,639	-				-3.4
5,143,639	-				-2.0
5,143,639	-				-0.2
5,143,639	-				-1.3
5,143,641	+				-0.2
5,143,641	+				-0.6
5,143,641	+				-1.6
5,143,642	-				-3.0
5,143,642	-				-1.8
5,143,668	+				-1.7
5,143,752	-		PfGW456L13_4606	0.11	-0.1
5,143,760	-		PfGW456L13_4606	0.12	-3.0
5,143,852	+		PfGW456L13_4606	0.20	-1.5
5,143,853	-		PfGW456L13_4606	0.20	+0.0
5,143,853	-		PfGW456L13_4606	0.20	+0.8
5,143,853	-		PfGW456L13_4606	0.20	-0.8
5,143,972	+		PfGW456L13_4606	0.31	-0.6
5,143,972	+		PfGW456L13_4606	0.31	-2.7
5,143,972	+		PfGW456L13_4606	0.31	-2.6
5,143,973	-		PfGW456L13_4606	0.31	-2.0
5,143,973	-		PfGW456L13_4606	0.31	-0.3
5,143,973	-		PfGW456L13_4606	0.31	-0.4
5,143,973	-		PfGW456L13_4606	0.31	-1.0
5,144,098	+		PfGW456L13_4606	0.42	-2.3
5,144,098	+		PfGW456L13_4606	0.42	-2.0
5,144,098	+		PfGW456L13_4606	0.42	-1.4
5,144,098	+		PfGW456L13_4606	0.42	-2.3
5,144,098	+		PfGW456L13_4606	0.42	-0.9
5,144,098	+		PfGW456L13_4606	0.42	-0.7
5,144,098	+		PfGW456L13_4606	0.42	-1.3
5,144,098	+		PfGW456L13_4606	0.42	-0.2
5,144,098	+		PfGW456L13_4606	0.42	-0.1
5,144,099	-		PfGW456L13_4606	0.42	-0.7
5,144,099	-		PfGW456L13_4606	0.42	+0.0
5,144,099	-		PfGW456L13_4606	0.42	-1.9
5,144,099	-		PfGW456L13_4606	0.42	-1.4
5,144,099	-		PfGW456L13_4606	0.42	-4.6
5,144,099	-		PfGW456L13_4606	0.42	-1.4
5,144,099	-		PfGW456L13_4606	0.42	-2.0
5,144,099	-		PfGW456L13_4606	0.42	-1.3
5,144,099	-		PfGW456L13_4606	0.42	-0.2
5,144,099	-		PfGW456L13_4606	0.42	-2.4
5,144,099	-		PfGW456L13_4606	0.42	-2.8
5,144,099	-		PfGW456L13_4606	0.42	-0.6
5,144,099	-		PfGW456L13_4606	0.42	-3.3
5,144,099	-		PfGW456L13_4606	0.42	-2.0
5,144,099	-		PfGW456L13_4606	0.42	-3.7
5,144,099	-		PfGW456L13_4606	0.42	-0.8
5,144,099	-		PfGW456L13_4606	0.42	-0.9
5,144,099	-		PfGW456L13_4606	0.42	-1.6
5,144,099	-		PfGW456L13_4606	0.42	+0.4
5,144,099	-		PfGW456L13_4606	0.42	-1.9
5,144,114	+		PfGW456L13_4606	0.43	-1.6
5,144,114	+		PfGW456L13_4606	0.43	-1.1
5,144,155	+		PfGW456L13_4606	0.47	-2.0
5,144,156	-		PfGW456L13_4606	0.47	-0.4
5,144,156	-		PfGW456L13_4606	0.47	-0.9
5,144,302	+		PfGW456L13_4606	0.60	-1.2
5,144,302	+		PfGW456L13_4606	0.60	-0.9
5,144,303	-		PfGW456L13_4606	0.60	-1.1
5,144,549	-		PfGW456L13_4606	0.82	+0.0
5,144,650	-				-2.0
5,144,707	+				-1.0
5,144,707	+				-2.4
5,144,707	+				-1.1
5,144,708	-				+1.0
5,144,708	-				-3.4
5,144,753	-				-0.4
5,144,779	-				-2.7
5,144,817	+				+0.8
5,144,817	+				+0.8
5,144,817	+				+0.2
5,144,817	+				+0.4
5,144,817	+				+1.3
5,144,817	+				+0.6
5,144,817	+				+1.4
5,144,818	-				-1.0
5,144,818	-				-0.6
5,144,818	-				-3.1
5,144,818	-				-1.0
5,144,818	-				-0.9
5,144,818	-				-0.3
5,144,818	-				-1.9
5,144,818	-				-0.5
5,144,965	-		PfGW456L13_4607	0.68	-2.8
5,144,986	+		PfGW456L13_4607	0.84	-1.3
5,145,000	+				-1.7
5,145,000	+				-3.4
5,145,000	+				-1.6
5,145,000	+				-1.4
5,145,001	-				-1.4
5,145,001	-				-1.3
5,145,001	-				-1.5
5,145,001	-				-2.4
5,145,001	-				-0.9
5,145,048	+				-3.1
5,145,048	+				-1.9
5,145,048	+				-1.4
5,145,048	+				-1.1
5,145,048	+				-0.6
5,145,048	+				-1.5
5,145,048	+				-1.8
5,145,048	+				+0.0
5,145,048	+				-3.3
5,145,048	+				-2.8
5,145,048	+				-0.7
5,145,049	-				-0.7
5,145,049	-				+1.4
5,145,049	-				-1.2
5,145,049	-				-4.1
5,145,049	-				-0.7
5,145,049	-				-1.1
5,145,049	-				-1.7
5,145,071	+				-0.9
5,145,071	+				-4.3
5,145,071	+				+0.2
5,145,072	-				-3.4
5,145,072	-				-1.0
5,145,072	-				-2.2
5,145,081	+		PfGW456L13_4608	0.10	-1.0
5,145,123	+		PfGW456L13_4608	0.15	-1.1
5,145,123	+		PfGW456L13_4608	0.15	-3.6
5,145,123	+		PfGW456L13_4608	0.15	-3.3
5,145,123	+		PfGW456L13_4608	0.15	-1.9
5,145,123	+		PfGW456L13_4608	0.15	-2.3
5,145,123	+		PfGW456L13_4608	0.15	-2.2
5,145,123	+		PfGW456L13_4608	0.15	-1.6
5,145,123	+		PfGW456L13_4608	0.15	-1.4
5,145,124	-		PfGW456L13_4608	0.15	-2.1
5,145,124	-		PfGW456L13_4608	0.15	+0.0
5,145,124	-		PfGW456L13_4608	0.15	-2.1
5,145,124	-		PfGW456L13_4608	0.15	-1.1
5,145,124	-		PfGW456L13_4608	0.15	-2.0
5,145,124	-		PfGW456L13_4608	0.15	-0.5
5,145,124	-		PfGW456L13_4608	0.15	-3.5
5,145,124	-		PfGW456L13_4608	0.15	-1.3
5,145,138	+		PfGW456L13_4608	0.16	-1.8
5,145,138	+		PfGW456L13_4608	0.16	-0.6
5,145,139	-		PfGW456L13_4608	0.16	-2.4
5,145,139	-		PfGW456L13_4608	0.16	-0.3
5,145,139	-		PfGW456L13_4608	0.16	-1.3
5,145,139	-		PfGW456L13_4608	0.16	-3.0
5,145,139	-		PfGW456L13_4608	0.16	-0.3
5,145,139	-		PfGW456L13_4608	0.16	-2.3
5,145,232	+		PfGW456L13_4608	0.26	-4.8
5,145,232	+		PfGW456L13_4608	0.26	-2.5
5,145,233	-		PfGW456L13_4608	0.27	-2.8
5,145,233	-		PfGW456L13_4608	0.27	-0.7
5,145,233	-		PfGW456L13_4608	0.27	-1.2
5,145,243	+		PfGW456L13_4608	0.28	-1.4
5,145,250	-		PfGW456L13_4608	0.28	-2.2
5,145,447	+		PfGW456L13_4608	0.50	-4.1
5,145,448	-		PfGW456L13_4608	0.50	-3.7
5,145,448	-		PfGW456L13_4608	0.50	+0.1
5,145,448	-		PfGW456L13_4608	0.50	-1.5
5,145,448	-		PfGW456L13_4608	0.50	-2.0
5,145,579	-		PfGW456L13_4608	0.64	-1.2
5,145,663	+		PfGW456L13_4608	0.73	-2.2
5,145,664	-		PfGW456L13_4608	0.73	-0.9