Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_401

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_400 and PfGW456L13_401 overlap by 4 nucleotidesPfGW456L13_401 and PfGW456L13_402 are separated by 40 nucleotidesPfGW456L13_402 and PfGW456L13_403 are separated by 164 nucleotides PfGW456L13_400 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system, at 461,688 to 463,496 _400 PfGW456L13_401 - C4-dicarboxylate transport transcriptional regulatory protein, at 463,493 to 464,887 _401 PfGW456L13_402 - Histone acetyltransferase HPA2 and related acetyltransferases, at 464,928 to 465,383 _402 PfGW456L13_403 - 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7), at 465,548 to 466,375 _403 Position (kb) 463 464 465Strain fitness (log2 ratio) -2 -1 0 1 2at 462.527 kb on + strand, within PfGW456L13_400at 462.527 kb on + strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.528 kb on - strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.606 kb on + strand, within PfGW456L13_400at 462.748 kb on + strand, within PfGW456L13_400at 462.856 kb on - strand, within PfGW456L13_400at 463.144 kb on + strand, within PfGW456L13_400at 463.144 kb on + strand, within PfGW456L13_400at 463.202 kb on + strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.203 kb on - strand, within PfGW456L13_400at 463.248 kb on + strand, within PfGW456L13_400at 463.248 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.311 kb on + strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.312 kb on - strand, within PfGW456L13_400at 463.728 kb on + strand, within PfGW456L13_401at 463.796 kb on + strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.797 kb on - strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.923 kb on + strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 463.924 kb on - strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.408 kb on + strand, within PfGW456L13_401at 464.409 kb on - strand, within PfGW456L13_401at 464.409 kb on - strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401at 464.486 kb on + strand, within PfGW456L13_401at 465.093 kb on + strand, within PfGW456L13_402at 465.093 kb on + strand, within PfGW456L13_402at 465.094 kb on - strand, within PfGW456L13_402at 465.156 kb on - strand, within PfGW456L13_402at 465.196 kb on - strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.311 kb on + strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.312 kb on - strand, within PfGW456L13_402at 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.366 kb on + strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.367 kb on - strandat 465.537 kb on + strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.538 kb on - strandat 465.642 kb on + strand, within PfGW456L13_403

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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462,527 + PfGW456L13_400 0.46 -0.8
462,527 + PfGW456L13_400 0.46 +2.6
462,528 - PfGW456L13_400 0.46 -0.3
462,528 - PfGW456L13_400 0.46 +1.4
462,528 - PfGW456L13_400 0.46 +0.3
462,528 - PfGW456L13_400 0.46 -0.0
462,528 - PfGW456L13_400 0.46 +0.2
462,528 - PfGW456L13_400 0.46 -0.1
462,606 + PfGW456L13_400 0.51 +0.5
462,606 + PfGW456L13_400 0.51 -0.0
462,606 + PfGW456L13_400 0.51 +0.3
462,748 + PfGW456L13_400 0.59 +0.2
462,856 - PfGW456L13_400 0.65 +0.5
463,144 + PfGW456L13_400 0.80 +0.3
463,144 + PfGW456L13_400 0.80 -0.9
463,202 + PfGW456L13_400 0.84 +0.8
463,203 - PfGW456L13_400 0.84 +0.5
463,203 - PfGW456L13_400 0.84 +1.0
463,203 - PfGW456L13_400 0.84 +1.0
463,248 + PfGW456L13_400 0.86 -0.3
463,248 + PfGW456L13_400 0.86 -0.2
463,311 + PfGW456L13_400 0.90 +0.4
463,311 + PfGW456L13_400 0.90 -0.5
463,311 + PfGW456L13_400 0.90 -1.3
463,311 + PfGW456L13_400 0.90 +2.2
463,312 - PfGW456L13_400 0.90 +1.2
463,312 - PfGW456L13_400 0.90 -0.0
463,312 - PfGW456L13_400 0.90 -0.4
463,728 + PfGW456L13_401 0.17 +0.2
463,796 + PfGW456L13_401 0.22 +0.3
463,797 - PfGW456L13_401 0.22 -0.9
463,797 - PfGW456L13_401 0.22 +0.5
463,797 - PfGW456L13_401 0.22 +0.6
463,923 + PfGW456L13_401 0.31 -0.2
463,923 + PfGW456L13_401 0.31 +0.1
463,923 + PfGW456L13_401 0.31 -0.1
463,923 + PfGW456L13_401 0.31 +0.5
463,923 + PfGW456L13_401 0.31 +0.4
463,923 + PfGW456L13_401 0.31 +0.1
463,924 - PfGW456L13_401 0.31 -0.1
463,924 - PfGW456L13_401 0.31 +0.6
463,924 - PfGW456L13_401 0.31 +1.1
464,408 + PfGW456L13_401 0.66 -1.1
464,408 + PfGW456L13_401 0.66 -0.1
464,408 + PfGW456L13_401 0.66 +0.8
464,408 + PfGW456L13_401 0.66 +0.7
464,409 - PfGW456L13_401 0.66 +1.5
464,409 - PfGW456L13_401 0.66 +0.5
464,486 + PfGW456L13_401 0.71 -0.4
464,486 + PfGW456L13_401 0.71 +0.4
464,486 + PfGW456L13_401 0.71 +0.5
465,093 + PfGW456L13_402 0.36 -1.4
465,093 + PfGW456L13_402 0.36 +1.6
465,094 - PfGW456L13_402 0.36 +0.1
465,156 - PfGW456L13_402 0.50 +0.1
465,196 - PfGW456L13_402 0.59 -2.2
465,311 + PfGW456L13_402 0.84 +0.1
465,311 + PfGW456L13_402 0.84 +0.6
465,311 + PfGW456L13_402 0.84 +0.7
465,311 + PfGW456L13_402 0.84 -0.1
465,312 - PfGW456L13_402 0.84 +1.6
465,312 - PfGW456L13_402 0.84 -0.4
465,312 - PfGW456L13_402 0.84 -0.6
465,312 - PfGW456L13_402 0.84 -0.1
465,312 - PfGW456L13_402 0.84 -0.9
465,312 - PfGW456L13_402 0.84 -0.8
465,366 + -0.0
465,366 + +0.5
465,366 + -0.8
465,366 + +0.5
465,366 + +0.8
465,366 + -0.5
465,367 - -0.6
465,367 - -0.8
465,367 - -2.3
465,367 - +0.5
465,367 - -1.1
465,367 - -0.6
465,367 - -0.1
465,367 - -0.2
465,537 + +0.4
465,538 - +1.9
465,538 - -0.1
465,538 - -1.0
465,538 - +1.1
465,538 - -0.9
465,538 - -2.2
465,538 - +1.7
465,538 - +1.1
465,642 + PfGW456L13_403 0.11 -1.6

Or see this region's nucleotide sequence