Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_35 and PfGW456L13_36 are separated by 55 nucleotides PfGW456L13_36 and PfGW456L13_37 are separated by 12 nucleotides PfGW456L13_37 and PfGW456L13_38 overlap by 1 nucleotides PfGW456L13_38 and PfGW456L13_39 are separated by 155 nucleotides PfGW456L13_39 and PfGW456L13_40 are separated by 187 nucleotides
PfGW456L13_35 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 42,645 to 43,208
_35
PfGW456L13_36 - lipoprotein, putative, at 43,264 to 43,872
_36
PfGW456L13_37 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 43,885 to 44,634
_37
PfGW456L13_38 - FIG00953349: hypothetical protein, at 44,634 to 44,936
_38
PfGW456L13_39 - Permeases of the major facilitator superfamily, at 45,092 to 45,385
_39
PfGW456L13_40 - DNA-damage-inducible protein F, at 45,573 to 46,922
_40
Position (kb) 43
44
45 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 42.892 kb on + strand, within PfGW456L13_35 at 42.892 kb on + strand, within PfGW456L13_35 at 42.892 kb on + strand, within PfGW456L13_35 at 42.893 kb on - strand, within PfGW456L13_35 at 42.893 kb on - strand, within PfGW456L13_35 at 42.893 kb on - strand, within PfGW456L13_35 at 42.934 kb on + strand, within PfGW456L13_35 at 42.935 kb on - strand, within PfGW456L13_35 at 42.935 kb on - strand, within PfGW456L13_35 at 42.935 kb on - strand, within PfGW456L13_35 at 43.069 kb on + strand, within PfGW456L13_35 at 43.106 kb on - strand, within PfGW456L13_35 at 43.189 kb on - strand at 43.251 kb on + strand at 43.252 kb on - strand at 43.252 kb on - strand at 43.252 kb on - strand at 43.252 kb on - strand at 43.256 kb on - strand at 43.265 kb on + strand at 43.265 kb on + strand at 43.266 kb on - strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.269 kb on + strand at 43.270 kb on - strand at 43.270 kb on - strand at 43.270 kb on - strand at 43.270 kb on - strand at 43.278 kb on - strand at 43.398 kb on + strand, within PfGW456L13_36 at 43.398 kb on + strand, within PfGW456L13_36 at 43.398 kb on + strand, within PfGW456L13_36 at 43.398 kb on + strand, within PfGW456L13_36 at 43.399 kb on - strand, within PfGW456L13_36 at 43.399 kb on - strand, within PfGW456L13_36 at 43.399 kb on - strand, within PfGW456L13_36 at 43.399 kb on - strand, within PfGW456L13_36 at 43.430 kb on + strand, within PfGW456L13_36 at 43.430 kb on + strand, within PfGW456L13_36 at 43.430 kb on + strand, within PfGW456L13_36 at 43.430 kb on + strand, within PfGW456L13_36 at 43.430 kb on + strand, within PfGW456L13_36 at 43.431 kb on - strand, within PfGW456L13_36 at 43.434 kb on + strand, within PfGW456L13_36 at 43.435 kb on - strand, within PfGW456L13_36 at 43.435 kb on - strand, within PfGW456L13_36 at 43.435 kb on - strand, within PfGW456L13_36 at 43.447 kb on + strand, within PfGW456L13_36 at 43.447 kb on + strand, within PfGW456L13_36 at 43.447 kb on + strand, within PfGW456L13_36 at 43.478 kb on + strand, within PfGW456L13_36 at 43.488 kb on - strand, within PfGW456L13_36 at 43.488 kb on - strand, within PfGW456L13_36 at 43.488 kb on - strand, within PfGW456L13_36 at 43.511 kb on + strand, within PfGW456L13_36 at 43.511 kb on + strand, within PfGW456L13_36 at 43.512 kb on - strand, within PfGW456L13_36 at 43.522 kb on + strand, within PfGW456L13_36 at 43.715 kb on + strand, within PfGW456L13_36 at 43.805 kb on + strand, within PfGW456L13_36 at 43.806 kb on - strand, within PfGW456L13_36 at 43.806 kb on - strand, within PfGW456L13_36 at 43.806 kb on - strand, within PfGW456L13_36 at 43.853 kb on - strand at 43.853 kb on - strand at 43.913 kb on + strand at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.012 kb on + strand, within PfGW456L13_37 at 44.013 kb on - strand, within PfGW456L13_37 at 44.013 kb on - strand, within PfGW456L13_37 at 44.013 kb on - strand, within PfGW456L13_37 at 44.013 kb on - strand, within PfGW456L13_37 at 44.013 kb on - strand, within PfGW456L13_37 at 44.180 kb on + strand, within PfGW456L13_37 at 44.180 kb on + strand, within PfGW456L13_37 at 44.180 kb on + strand, within PfGW456L13_37 at 44.181 kb on - strand, within PfGW456L13_37 at 44.181 kb on - strand, within PfGW456L13_37 at 44.181 kb on - strand, within PfGW456L13_37 at 44.182 kb on + strand, within PfGW456L13_37 at 44.182 kb on + strand, within PfGW456L13_37 at 44.182 kb on + strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.183 kb on - strand, within PfGW456L13_37 at 44.201 kb on + strand, within PfGW456L13_37 at 44.202 kb on - strand, within PfGW456L13_37 at 44.202 kb on - strand, within PfGW456L13_37 at 44.202 kb on - strand, within PfGW456L13_37 at 44.718 kb on + strand, within PfGW456L13_38 at 44.718 kb on + strand, within PfGW456L13_38 at 44.718 kb on + strand, within PfGW456L13_38 at 44.718 kb on + strand, within PfGW456L13_38 at 44.719 kb on - strand, within PfGW456L13_38 at 44.719 kb on - strand, within PfGW456L13_38 at 44.719 kb on - strand, within PfGW456L13_38 at 44.722 kb on + strand, within PfGW456L13_38 at 44.722 kb on + strand, within PfGW456L13_38 at 44.722 kb on + strand, within PfGW456L13_38 at 44.722 kb on + strand, within PfGW456L13_38 at 44.723 kb on - strand, within PfGW456L13_38 at 44.723 kb on - strand, within PfGW456L13_38 at 44.723 kb on - strand, within PfGW456L13_38 at 44.955 kb on + strand at 44.955 kb on + strand at 44.955 kb on + strand at 44.955 kb on + strand at 44.955 kb on + strand at 44.955 kb on + strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.956 kb on - strand at 44.957 kb on + strand at 44.957 kb on + strand at 44.957 kb on + strand at 44.957 kb on + strand at 44.957 kb on + strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 44.958 kb on - strand at 45.020 kb on + strand at 45.021 kb on - strand at 45.021 kb on - strand at 45.099 kb on + strand at 45.099 kb on + strand at 45.100 kb on - strand at 45.100 kb on - strand at 45.100 kb on - strand at 45.100 kb on - strand at 45.241 kb on + strand, within PfGW456L13_39 at 45.241 kb on + strand, within PfGW456L13_39 at 45.242 kb on - strand, within PfGW456L13_39 at 45.506 kb on + strand at 45.506 kb on + strand at 45.507 kb on - strand at 45.507 kb on - strand at 45.507 kb on - strand at 45.523 kb on + strand at 45.523 kb on + strand at 45.523 kb on + strand at 45.524 kb on - strand at 45.524 kb on - strand at 45.524 kb on - strand at 45.524 kb on - strand at 45.524 kb on - strand at 45.524 kb on - strand at 45.527 kb on + strand at 45.527 kb on + strand at 45.527 kb on + strand at 45.528 kb on - strand at 45.544 kb on + strand at 45.544 kb on + strand at 45.544 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 42,892 + PfGW456L13_35 0.44 -0.4 42,892 + PfGW456L13_35 0.44 -0.2 42,892 + PfGW456L13_35 0.44 +1.1 42,893 - PfGW456L13_35 0.44 +1.9 42,893 - PfGW456L13_35 0.44 +0.1 42,893 - PfGW456L13_35 0.44 -0.5 42,934 + PfGW456L13_35 0.51 +0.5 42,935 - PfGW456L13_35 0.51 +1.4 42,935 - PfGW456L13_35 0.51 -0.4 42,935 - PfGW456L13_35 0.51 +0.2 43,069 + PfGW456L13_35 0.75 +0.8 43,106 - PfGW456L13_35 0.82 +1.0 43,189 - -0.4 43,251 + -0.0 43,252 - -0.0 43,252 - -0.0 43,252 - -0.2 43,252 - +0.1 43,256 - +1.2 43,265 + +0.1 43,265 + +0.9 43,266 - +0.9 43,269 + -1.6 43,269 + +0.2 43,269 + -0.0 43,269 + -0.4 43,269 + -0.0 43,269 + +0.2 43,269 + -1.0 43,269 + -0.4 43,270 - +2.8 43,270 - -1.0 43,270 - -0.1 43,270 - +0.2 43,278 - -0.7 43,398 + PfGW456L13_36 0.22 -1.1 43,398 + PfGW456L13_36 0.22 -0.5 43,398 + PfGW456L13_36 0.22 -0.1 43,398 + PfGW456L13_36 0.22 -0.3 43,399 - PfGW456L13_36 0.22 +0.8 43,399 - PfGW456L13_36 0.22 +0.5 43,399 - PfGW456L13_36 0.22 -0.2 43,399 - PfGW456L13_36 0.22 -0.9 43,430 + PfGW456L13_36 0.27 -0.1 43,430 + PfGW456L13_36 0.27 -0.4 43,430 + PfGW456L13_36 0.27 -0.1 43,430 + PfGW456L13_36 0.27 +0.9 43,430 + PfGW456L13_36 0.27 -0.7 43,431 - PfGW456L13_36 0.27 -0.2 43,434 + PfGW456L13_36 0.28 +0.4 43,435 - PfGW456L13_36 0.28 +0.6 43,435 - PfGW456L13_36 0.28 +0.8 43,435 - PfGW456L13_36 0.28 +0.1 43,447 + PfGW456L13_36 0.30 +1.7 43,447 + PfGW456L13_36 0.30 +0.4 43,447 + PfGW456L13_36 0.30 -0.6 43,478 + PfGW456L13_36 0.35 -0.7 43,488 - PfGW456L13_36 0.37 +0.1 43,488 - PfGW456L13_36 0.37 -2.3 43,488 - PfGW456L13_36 0.37 +0.7 43,511 + PfGW456L13_36 0.41 +0.1 43,511 + PfGW456L13_36 0.41 +0.3 43,512 - PfGW456L13_36 0.41 -1.3 43,522 + PfGW456L13_36 0.42 -0.1 43,715 + PfGW456L13_36 0.74 +0.6 43,805 + PfGW456L13_36 0.89 -0.3 43,806 - PfGW456L13_36 0.89 -1.8 43,806 - PfGW456L13_36 0.89 -0.1 43,806 - PfGW456L13_36 0.89 +0.4 43,853 - -0.3 43,853 - +0.4 43,913 + +0.3 44,012 + PfGW456L13_37 0.17 +0.0 44,012 + PfGW456L13_37 0.17 -0.4 44,012 + PfGW456L13_37 0.17 -1.8 44,012 + PfGW456L13_37 0.17 -0.1 44,012 + PfGW456L13_37 0.17 +0.2 44,012 + PfGW456L13_37 0.17 +0.2 44,012 + PfGW456L13_37 0.17 -1.3 44,012 + PfGW456L13_37 0.17 -0.9 44,012 + PfGW456L13_37 0.17 +0.1 44,012 + PfGW456L13_37 0.17 -0.1 44,012 + PfGW456L13_37 0.17 +0.0 44,013 - PfGW456L13_37 0.17 +0.2 44,013 - PfGW456L13_37 0.17 +0.1 44,013 - PfGW456L13_37 0.17 +2.1 44,013 - PfGW456L13_37 0.17 -0.0 44,013 - PfGW456L13_37 0.17 +0.2 44,180 + PfGW456L13_37 0.39 -0.9 44,180 + PfGW456L13_37 0.39 -2.0 44,180 + PfGW456L13_37 0.39 -1.4 44,181 - PfGW456L13_37 0.39 +0.4 44,181 - PfGW456L13_37 0.39 -0.4 44,181 - PfGW456L13_37 0.39 +0.3 44,182 + PfGW456L13_37 0.40 -0.7 44,182 + PfGW456L13_37 0.40 -0.3 44,182 + PfGW456L13_37 0.40 +0.7 44,183 - PfGW456L13_37 0.40 -2.1 44,183 - PfGW456L13_37 0.40 +0.6 44,183 - PfGW456L13_37 0.40 +0.7 44,183 - PfGW456L13_37 0.40 -1.5 44,183 - PfGW456L13_37 0.40 -0.0 44,183 - PfGW456L13_37 0.40 -0.1 44,201 + PfGW456L13_37 0.42 +0.3 44,202 - PfGW456L13_37 0.42 +0.1 44,202 - PfGW456L13_37 0.42 +1.7 44,202 - PfGW456L13_37 0.42 -0.5 44,718 + PfGW456L13_38 0.28 -2.5 44,718 + PfGW456L13_38 0.28 -1.4 44,718 + PfGW456L13_38 0.28 +0.1 44,718 + PfGW456L13_38 0.28 +0.2 44,719 - PfGW456L13_38 0.28 -2.5 44,719 - PfGW456L13_38 0.28 +1.5 44,719 - PfGW456L13_38 0.28 +1.0 44,722 + PfGW456L13_38 0.29 -0.3 44,722 + PfGW456L13_38 0.29 +0.5 44,722 + PfGW456L13_38 0.29 -1.0 44,722 + PfGW456L13_38 0.29 -0.2 44,723 - PfGW456L13_38 0.29 -0.5 44,723 - PfGW456L13_38 0.29 +0.8 44,723 - PfGW456L13_38 0.29 -0.3 44,955 + +0.2 44,955 + -0.0 44,955 + +0.6 44,955 + -0.3 44,955 + -0.4 44,955 + -0.6 44,956 - +1.5 44,956 - +0.8 44,956 - +0.5 44,956 - +1.3 44,956 - +0.9 44,956 - +1.3 44,956 - -0.4 44,957 + -2.0 44,957 + +1.3 44,957 + -0.3 44,957 + -2.0 44,957 + -0.4 44,958 - +1.2 44,958 - +0.2 44,958 - +0.9 44,958 - +0.7 44,958 - -0.1 44,958 - +0.6 44,958 - -0.9 44,958 - -0.0 45,020 + +0.1 45,021 - -0.3 45,021 - -0.8 45,099 + -0.3 45,099 + -0.4 45,100 - -0.7 45,100 - +0.6 45,100 - +0.6 45,100 - -1.4 45,241 + PfGW456L13_39 0.51 +0.3 45,241 + PfGW456L13_39 0.51 -0.7 45,242 - PfGW456L13_39 0.51 +0.7 45,506 + +0.9 45,506 + +0.9 45,507 - +0.4 45,507 - +0.4 45,507 - -0.1 45,523 + -0.2 45,523 + +1.5 45,523 + +0.0 45,524 - +1.5 45,524 - +0.6 45,524 - -0.6 45,524 - +0.1 45,524 - +0.9 45,524 - +1.2 45,527 + +0.8 45,527 + +0.1 45,527 + +0.6 45,528 - -0.2 45,544 + -0.1 45,544 + -0.6 45,544 + -0.5
Or see this region's nucleotide sequence