Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_359

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_357 and PfGW456L13_358 are separated by 78 nucleotidesPfGW456L13_358 and PfGW456L13_359 are separated by 9 nucleotidesPfGW456L13_359 and PfGW456L13_360 are separated by 42 nucleotidesPfGW456L13_360 and PfGW456L13_361 are separated by 0 nucleotidesPfGW456L13_361 and PfGW456L13_362 overlap by 1 nucleotides PfGW456L13_357 - ABC-type amino acid transport, signal transduction systems, periplasmic component/domain, at 417,787 to 418,542 _357 PfGW456L13_358 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 418,621 to 419,391 _358 PfGW456L13_359 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data), at 419,401 to 420,138 _359 PfGW456L13_360 - FIG00956267: hypothetical protein, at 420,181 to 420,438 _360 PfGW456L13_361 - Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-), at 420,439 to 421,077 _361 PfGW456L13_362 - Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19), at 421,077 to 421,670 _362 Position (kb) 419 420 421Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 418.424 kb on + strand, within PfGW456L13_357at 418.425 kb on - strand, within PfGW456L13_357at 418.425 kb on - strand, within PfGW456L13_357at 418.536 kb on + strandat 418.536 kb on + strandat 418.536 kb on + strandat 418.537 kb on - strandat 418.537 kb on - strandat 418.537 kb on - strandat 418.622 kb on + strandat 418.623 kb on - strandat 418.650 kb on + strandat 418.651 kb on - strandat 418.651 kb on - strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.652 kb on + strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.653 kb on - strandat 418.676 kb on + strandat 418.677 kb on - strandat 419.248 kb on - strand, within PfGW456L13_358at 419.248 kb on - strand, within PfGW456L13_358at 419.273 kb on + strand, within PfGW456L13_358at 419.411 kb on + strandat 419.411 kb on + strandat 419.411 kb on + strandat 419.412 kb on - strandat 419.412 kb on - strandat 419.412 kb on - strandat 419.412 kb on - strandat 419.412 kb on - strandat 419.412 kb on - strandat 419.459 kb on + strandat 419.460 kb on - strandat 419.460 kb on - strandat 419.599 kb on + strand, within PfGW456L13_359at 419.599 kb on + strand, within PfGW456L13_359at 419.600 kb on - strand, within PfGW456L13_359at 419.600 kb on - strand, within PfGW456L13_359at 419.600 kb on - strand, within PfGW456L13_359at 419.600 kb on - strand, within PfGW456L13_359at 419.640 kb on + strand, within PfGW456L13_359at 419.640 kb on + strand, within PfGW456L13_359at 419.642 kb on + strand, within PfGW456L13_359at 419.643 kb on - strand, within PfGW456L13_359at 419.643 kb on - strand, within PfGW456L13_359at 419.840 kb on + strand, within PfGW456L13_359at 419.840 kb on + strand, within PfGW456L13_359at 419.840 kb on + strand, within PfGW456L13_359at 419.840 kb on + strand, within PfGW456L13_359at 419.840 kb on + strand, within PfGW456L13_359at 419.841 kb on - strand, within PfGW456L13_359at 419.841 kb on - strand, within PfGW456L13_359at 419.841 kb on - strand, within PfGW456L13_359at 419.861 kb on + strand, within PfGW456L13_359at 419.861 kb on + strand, within PfGW456L13_359at 419.861 kb on + strand, within PfGW456L13_359at 419.861 kb on + strand, within PfGW456L13_359at 419.861 kb on + strand, within PfGW456L13_359at 419.862 kb on - strand, within PfGW456L13_359at 419.862 kb on - strand, within PfGW456L13_359at 420.111 kb on + strandat 420.112 kb on - strandat 420.129 kb on + strandat 420.130 kb on - strandat 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.269 kb on + strand, within PfGW456L13_360at 420.270 kb on - strand, within PfGW456L13_360at 420.270 kb on - strand, within PfGW456L13_360at 420.272 kb on + strand, within PfGW456L13_360at 420.273 kb on - strand, within PfGW456L13_360at 420.440 kb on + strandat 420.441 kb on - strandat 420.493 kb on - strandat 420.566 kb on + strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.567 kb on - strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.611 kb on + strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.612 kb on - strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.614 kb on + strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 420.615 kb on - strand, within PfGW456L13_361at 421.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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418,424 + PfGW456L13_357 0.84 +0.2
418,425 - PfGW456L13_357 0.84 +0.4
418,425 - PfGW456L13_357 0.84 +0.7
418,536 + +0.6
418,536 + +1.4
418,536 + +0.2
418,537 - +0.7
418,537 - +1.1
418,537 - +0.5
418,622 + +0.3
418,623 - +1.4
418,650 + -3.7
418,651 - -3.6
418,651 - -3.6
418,652 + -3.5
418,652 + -0.7
418,652 + -3.6
418,652 + -3.1
418,652 + -2.7
418,652 + -3.2
418,652 + -3.0
418,652 + -2.0
418,652 + -3.6
418,652 + -2.4
418,652 + -3.0
418,652 + -2.3
418,652 + -2.6
418,653 - -3.8
418,653 - -4.2
418,653 - -3.8
418,653 - -2.8
418,653 - -3.1
418,653 - -4.6
418,653 - -2.8
418,653 - -4.0
418,653 - -3.9
418,653 - -4.2
418,653 - -4.0
418,653 - -3.9
418,653 - -4.7
418,653 - -3.5
418,653 - -1.7
418,653 - -3.0
418,653 - -3.4
418,676 + -3.0
418,677 - -2.4
419,248 - PfGW456L13_358 0.81 -3.7
419,248 - PfGW456L13_358 0.81 -1.9
419,273 + PfGW456L13_358 0.85 -4.3
419,411 + -1.7
419,411 + -4.1
419,411 + -2.6
419,412 - +0.9
419,412 - +0.4
419,412 - +1.4
419,412 - +0.6
419,412 - -0.2
419,412 - -0.9
419,459 + -3.3
419,460 - -4.3
419,460 - -3.5
419,599 + PfGW456L13_359 0.27 -4.1
419,599 + PfGW456L13_359 0.27 -3.5
419,600 - PfGW456L13_359 0.27 -3.0
419,600 - PfGW456L13_359 0.27 -2.9
419,600 - PfGW456L13_359 0.27 -3.3
419,600 - PfGW456L13_359 0.27 -3.1
419,640 + PfGW456L13_359 0.32 -5.0
419,640 + PfGW456L13_359 0.32 -3.3
419,642 + PfGW456L13_359 0.33 -3.5
419,643 - PfGW456L13_359 0.33 -2.7
419,643 - PfGW456L13_359 0.33 -2.9
419,840 + PfGW456L13_359 0.59 -2.1
419,840 + PfGW456L13_359 0.59 -2.9
419,840 + PfGW456L13_359 0.59 -1.7
419,840 + PfGW456L13_359 0.59 -3.4
419,840 + PfGW456L13_359 0.59 -4.0
419,841 - PfGW456L13_359 0.60 -2.7
419,841 - PfGW456L13_359 0.60 -3.1
419,841 - PfGW456L13_359 0.60 -2.5
419,861 + PfGW456L13_359 0.62 -3.1
419,861 + PfGW456L13_359 0.62 -3.9
419,861 + PfGW456L13_359 0.62 -4.3
419,861 + PfGW456L13_359 0.62 -2.0
419,861 + PfGW456L13_359 0.62 -2.7
419,862 - PfGW456L13_359 0.62 -3.3
419,862 - PfGW456L13_359 0.62 -0.6
420,111 + -1.6
420,112 - -5.0
420,129 + -1.4
420,130 - -5.0
420,269 + PfGW456L13_360 0.34 -3.3
420,269 + PfGW456L13_360 0.34 -3.7
420,269 + PfGW456L13_360 0.34 -4.0
420,269 + PfGW456L13_360 0.34 -4.2
420,269 + PfGW456L13_360 0.34 -3.0
420,270 - PfGW456L13_360 0.34 -0.2
420,270 - PfGW456L13_360 0.34 +0.7
420,272 + PfGW456L13_360 0.35 -3.3
420,273 - PfGW456L13_360 0.36 -0.1
420,440 + -2.7
420,441 - +1.3
420,493 - -3.1
420,566 + PfGW456L13_361 0.20 -3.8
420,567 - PfGW456L13_361 0.20 -3.0
420,567 - PfGW456L13_361 0.20 -2.0
420,567 - PfGW456L13_361 0.20 -2.4
420,611 + PfGW456L13_361 0.27 -2.9
420,611 + PfGW456L13_361 0.27 -3.2
420,611 + PfGW456L13_361 0.27 -3.6
420,611 + PfGW456L13_361 0.27 -4.0
420,611 + PfGW456L13_361 0.27 -2.3
420,611 + PfGW456L13_361 0.27 -4.1
420,611 + PfGW456L13_361 0.27 -2.1
420,612 - PfGW456L13_361 0.27 -3.2
420,612 - PfGW456L13_361 0.27 -2.7
420,612 - PfGW456L13_361 0.27 -3.8
420,612 - PfGW456L13_361 0.27 -4.5
420,612 - PfGW456L13_361 0.27 -4.4
420,612 - PfGW456L13_361 0.27 -2.3
420,612 - PfGW456L13_361 0.27 -0.8
420,612 - PfGW456L13_361 0.27 -2.9
420,612 - PfGW456L13_361 0.27 -4.1
420,612 - PfGW456L13_361 0.27 -4.3
420,612 - PfGW456L13_361 0.27 -4.2
420,612 - PfGW456L13_361 0.27 -3.1
420,612 - PfGW456L13_361 0.27 -3.0
420,614 + PfGW456L13_361 0.27 -2.8
420,614 + PfGW456L13_361 0.27 -4.7
420,614 + PfGW456L13_361 0.27 -3.8
420,614 + PfGW456L13_361 0.27 -3.3
420,614 + PfGW456L13_361 0.27 -1.7
420,614 + PfGW456L13_361 0.27 -0.1
420,614 + PfGW456L13_361 0.27 -4.3
420,614 + PfGW456L13_361 0.27 -0.9
420,615 - PfGW456L13_361 0.28 -3.1
420,615 - PfGW456L13_361 0.28 -1.2
420,615 - PfGW456L13_361 0.28 -4.8
420,615 - PfGW456L13_361 0.28 -2.8
420,615 - PfGW456L13_361 0.28 -3.5
420,615 - PfGW456L13_361 0.28 -4.3
420,615 - PfGW456L13_361 0.28 -3.7
421,078 + -3.1

Or see this region's nucleotide sequence