Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3531

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3529 and PfGW456L13_3530 overlap by 4 nucleotidesPfGW456L13_3530 and PfGW456L13_3531 are separated by 116 nucleotidesPfGW456L13_3531 and PfGW456L13_3532 overlap by 26 nucleotides PfGW456L13_3529 - Mobile element protein, at 3,971,176 to 3,971,481 _3529 PfGW456L13_3530 - Mobile element protein, at 3,971,478 to 3,972,314 _3530 PfGW456L13_3531 - Sensory box histidine kinase/response regulator, at 3,972,431 to 3,975,019 _3531 PfGW456L13_3532 - FIG00955631: hypothetical protein, at 3,974,994 to 3,976,157 _3532 Position (kb) 3972 3973 3974 3975 3976Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3972.338 kb on + strandat 3972.543 kb on + strandat 3972.543 kb on + strandat 3972.543 kb on + strandat 3972.544 kb on - strandat 3972.544 kb on - strandat 3972.544 kb on - strandat 3972.544 kb on - strandat 3972.639 kb on + strandat 3972.672 kb on + strandat 3972.672 kb on + strandat 3972.673 kb on - strandat 3972.791 kb on + strand, within PfGW456L13_3531at 3972.876 kb on - strand, within PfGW456L13_3531at 3972.876 kb on - strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.134 kb on + strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.135 kb on - strand, within PfGW456L13_3531at 3973.138 kb on + strand, within PfGW456L13_3531at 3973.138 kb on + strand, within PfGW456L13_3531at 3973.139 kb on - strand, within PfGW456L13_3531at 3973.139 kb on - strand, within PfGW456L13_3531at 3973.139 kb on - strandat 3973.139 kb on - strand, within PfGW456L13_3531at 3973.139 kb on - strand, within PfGW456L13_3531at 3973.139 kb on - strand, within PfGW456L13_3531at 3973.140 kb on + strand, within PfGW456L13_3531at 3973.141 kb on - strand, within PfGW456L13_3531at 3973.141 kb on - strand, within PfGW456L13_3531at 3973.263 kb on + strand, within PfGW456L13_3531at 3973.348 kb on + strandat 3973.456 kb on + strand, within PfGW456L13_3531at 3973.456 kb on + strand, within PfGW456L13_3531at 3973.456 kb on + strand, within PfGW456L13_3531at 3973.669 kb on - strand, within PfGW456L13_3531at 3973.770 kb on + strand, within PfGW456L13_3531at 3973.771 kb on - strand, within PfGW456L13_3531at 3973.771 kb on - strand, within PfGW456L13_3531at 3973.771 kb on - strand, within PfGW456L13_3531at 3973.771 kb on - strand, within PfGW456L13_3531at 3973.771 kb on - strand, within PfGW456L13_3531at 3973.785 kb on + strand, within PfGW456L13_3531at 3973.785 kb on + strand, within PfGW456L13_3531at 3973.785 kb on + strand, within PfGW456L13_3531at 3973.786 kb on - strand, within PfGW456L13_3531at 3973.786 kb on - strand, within PfGW456L13_3531at 3973.786 kb on - strand, within PfGW456L13_3531at 3973.786 kb on - strand, within PfGW456L13_3531at 3973.860 kb on + strand, within PfGW456L13_3531at 3973.861 kb on - strand, within PfGW456L13_3531at 3973.861 kb on - strand, within PfGW456L13_3531at 3973.861 kb on - strand, within PfGW456L13_3531at 3973.879 kb on - strand, within PfGW456L13_3531at 3973.941 kb on + strand, within PfGW456L13_3531at 3973.942 kb on - strand, within PfGW456L13_3531at 3973.975 kb on - strand, within PfGW456L13_3531at 3973.995 kb on + strand, within PfGW456L13_3531at 3973.995 kb on + strand, within PfGW456L13_3531at 3973.995 kb on + strand, within PfGW456L13_3531at 3974.012 kb on + strand, within PfGW456L13_3531at 3974.012 kb on + strand, within PfGW456L13_3531at 3974.012 kb on + strand, within PfGW456L13_3531at 3974.013 kb on - strand, within PfGW456L13_3531at 3974.013 kb on - strand, within PfGW456L13_3531at 3974.013 kb on - strand, within PfGW456L13_3531at 3974.013 kb on - strand, within PfGW456L13_3531at 3974.073 kb on + strand, within PfGW456L13_3531at 3974.157 kb on + strand, within PfGW456L13_3531at 3974.158 kb on - strand, within PfGW456L13_3531at 3974.243 kb on + strand, within PfGW456L13_3531at 3974.244 kb on - strand, within PfGW456L13_3531at 3974.418 kb on - strand, within PfGW456L13_3531at 3974.953 kb on + strandat 3974.953 kb on + strandat 3974.954 kb on - strandat 3975.080 kb on - strandat 3975.349 kb on + strand, within PfGW456L13_3532at 3975.349 kb on + strand, within PfGW456L13_3532at 3975.349 kb on + strand, within PfGW456L13_3532at 3975.349 kb on + strand, within PfGW456L13_3532at 3975.349 kb on + strand, within PfGW456L13_3532at 3975.349 kb on + strand, within PfGW456L13_3532at 3975.350 kb on - strand, within PfGW456L13_3532at 3975.350 kb on - strand, within PfGW456L13_3532at 3975.350 kb on - strand, within PfGW456L13_3532at 3975.352 kb on + strand, within PfGW456L13_3532at 3975.352 kb on + strand, within PfGW456L13_3532at 3975.352 kb on + strand, within PfGW456L13_3532at 3975.569 kb on + strand, within PfGW456L13_3532at 3975.569 kb on + strand, within PfGW456L13_3532at 3975.569 kb on + strand, within PfGW456L13_3532at 3975.570 kb on - strand, within PfGW456L13_3532at 3975.619 kb on + strand, within PfGW456L13_3532at 3975.619 kb on + strand, within PfGW456L13_3532at 3975.620 kb on - strand, within PfGW456L13_3532at 3975.641 kb on - strand, within PfGW456L13_3532at 3975.641 kb on - strand, within PfGW456L13_3532at 3975.641 kb on - strand, within PfGW456L13_3532at 3975.641 kb on - strand, within PfGW456L13_3532at 3975.644 kb on + strand, within PfGW456L13_3532at 3975.645 kb on - strand, within PfGW456L13_3532at 3975.645 kb on - strand, within PfGW456L13_3532at 3975.925 kb on + strand, within PfGW456L13_3532at 3975.925 kb on + strand, within PfGW456L13_3532

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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3,972,338 + -0.4
3,972,543 + -1.5
3,972,543 + -2.9
3,972,543 + -1.2
3,972,544 - -2.4
3,972,544 - -0.8
3,972,544 - -0.4
3,972,544 - -1.1
3,972,639 + -2.7
3,972,672 + -1.9
3,972,672 + -3.6
3,972,673 - -1.2
3,972,791 + PfGW456L13_3531 0.14 -2.7
3,972,876 - PfGW456L13_3531 0.17 -1.4
3,972,876 - PfGW456L13_3531 0.17 -2.1
3,973,134 + PfGW456L13_3531 0.27 -3.1
3,973,134 + PfGW456L13_3531 0.27 -1.9
3,973,134 + PfGW456L13_3531 0.27 -0.2
3,973,134 + PfGW456L13_3531 0.27 -1.9
3,973,134 + PfGW456L13_3531 0.27 -2.3
3,973,134 + PfGW456L13_3531 0.27 -2.8
3,973,134 + PfGW456L13_3531 0.27 -1.1
3,973,135 - PfGW456L13_3531 0.27 -1.8
3,973,135 - PfGW456L13_3531 0.27 -2.0
3,973,135 - PfGW456L13_3531 0.27 +0.2
3,973,135 - PfGW456L13_3531 0.27 -0.5
3,973,135 - PfGW456L13_3531 0.27 -1.0
3,973,135 - PfGW456L13_3531 0.27 -2.8
3,973,135 - PfGW456L13_3531 0.27 -2.2
3,973,138 + PfGW456L13_3531 0.27 -2.9
3,973,138 + PfGW456L13_3531 0.27 -2.3
3,973,139 - PfGW456L13_3531 0.27 -1.5
3,973,139 - PfGW456L13_3531 0.27 -3.2
3,973,139 - -0.9
3,973,139 - PfGW456L13_3531 0.27 -0.8
3,973,139 - PfGW456L13_3531 0.27 -1.4
3,973,139 - PfGW456L13_3531 0.27 -3.3
3,973,140 + PfGW456L13_3531 0.27 -1.2
3,973,141 - PfGW456L13_3531 0.27 -1.5
3,973,141 - PfGW456L13_3531 0.27 -1.1
3,973,263 + PfGW456L13_3531 0.32 -0.9
3,973,348 + -1.7
3,973,456 + PfGW456L13_3531 0.40 -2.3
3,973,456 + PfGW456L13_3531 0.40 -3.5
3,973,456 + PfGW456L13_3531 0.40 -1.5
3,973,669 - PfGW456L13_3531 0.48 -1.5
3,973,770 + PfGW456L13_3531 0.52 -1.4
3,973,771 - PfGW456L13_3531 0.52 -2.8
3,973,771 - PfGW456L13_3531 0.52 -0.7
3,973,771 - PfGW456L13_3531 0.52 -0.2
3,973,771 - PfGW456L13_3531 0.52 -3.1
3,973,771 - PfGW456L13_3531 0.52 -1.8
3,973,785 + PfGW456L13_3531 0.52 -2.9
3,973,785 + PfGW456L13_3531 0.52 -1.0
3,973,785 + PfGW456L13_3531 0.52 -3.9
3,973,786 - PfGW456L13_3531 0.52 -2.9
3,973,786 - PfGW456L13_3531 0.52 -0.9
3,973,786 - PfGW456L13_3531 0.52 -3.2
3,973,786 - PfGW456L13_3531 0.52 -2.1
3,973,860 + PfGW456L13_3531 0.55 -0.1
3,973,861 - PfGW456L13_3531 0.55 -2.1
3,973,861 - PfGW456L13_3531 0.55 -1.4
3,973,861 - PfGW456L13_3531 0.55 -2.4
3,973,879 - PfGW456L13_3531 0.56 -1.9
3,973,941 + PfGW456L13_3531 0.58 -1.2
3,973,942 - PfGW456L13_3531 0.58 -1.5
3,973,975 - PfGW456L13_3531 0.60 -2.5
3,973,995 + PfGW456L13_3531 0.60 -1.2
3,973,995 + PfGW456L13_3531 0.60 -1.9
3,973,995 + PfGW456L13_3531 0.60 -2.5
3,974,012 + PfGW456L13_3531 0.61 -1.8
3,974,012 + PfGW456L13_3531 0.61 -2.7
3,974,012 + PfGW456L13_3531 0.61 -2.5
3,974,013 - PfGW456L13_3531 0.61 -1.5
3,974,013 - PfGW456L13_3531 0.61 -1.9
3,974,013 - PfGW456L13_3531 0.61 -2.7
3,974,013 - PfGW456L13_3531 0.61 -4.1
3,974,073 + PfGW456L13_3531 0.63 -3.6
3,974,157 + PfGW456L13_3531 0.67 -1.9
3,974,158 - PfGW456L13_3531 0.67 -3.5
3,974,243 + PfGW456L13_3531 0.70 -2.5
3,974,244 - PfGW456L13_3531 0.70 -1.9
3,974,418 - PfGW456L13_3531 0.77 -1.4
3,974,953 + -2.0
3,974,953 + -2.1
3,974,954 - -2.8
3,975,080 - -0.0
3,975,349 + PfGW456L13_3532 0.30 -1.5
3,975,349 + PfGW456L13_3532 0.30 -2.9
3,975,349 + PfGW456L13_3532 0.30 -2.2
3,975,349 + PfGW456L13_3532 0.30 -1.5
3,975,349 + PfGW456L13_3532 0.30 +0.1
3,975,349 + PfGW456L13_3532 0.30 -2.2
3,975,350 - PfGW456L13_3532 0.31 -2.0
3,975,350 - PfGW456L13_3532 0.31 -2.1
3,975,350 - PfGW456L13_3532 0.31 -0.8
3,975,352 + PfGW456L13_3532 0.31 -1.9
3,975,352 + PfGW456L13_3532 0.31 -2.5
3,975,352 + PfGW456L13_3532 0.31 -2.2
3,975,569 + PfGW456L13_3532 0.49 -3.1
3,975,569 + PfGW456L13_3532 0.49 -0.8
3,975,569 + PfGW456L13_3532 0.49 -1.5
3,975,570 - PfGW456L13_3532 0.49 -1.9
3,975,619 + PfGW456L13_3532 0.54 -3.9
3,975,619 + PfGW456L13_3532 0.54 -1.9
3,975,620 - PfGW456L13_3532 0.54 -2.9
3,975,641 - PfGW456L13_3532 0.56 -1.9
3,975,641 - PfGW456L13_3532 0.56 +0.2
3,975,641 - PfGW456L13_3532 0.56 -0.7
3,975,641 - PfGW456L13_3532 0.56 -1.7
3,975,644 + PfGW456L13_3532 0.56 -1.6
3,975,645 - PfGW456L13_3532 0.56 -1.5
3,975,645 - PfGW456L13_3532 0.56 -2.3
3,975,925 + PfGW456L13_3532 0.80 -2.7
3,975,925 + PfGW456L13_3532 0.80 -0.5

Or see this region's nucleotide sequence