Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3529 and PfGW456L13_3530 overlap by 4 nucleotides PfGW456L13_3530 and PfGW456L13_3531 are separated by 116 nucleotides PfGW456L13_3531 and PfGW456L13_3532 overlap by 26 nucleotides
PfGW456L13_3529 - Mobile element protein, at 3,971,176 to 3,971,481
_3529
PfGW456L13_3530 - Mobile element protein, at 3,971,478 to 3,972,314
_3530
PfGW456L13_3531 - Sensory box histidine kinase/response regulator, at 3,972,431 to 3,975,019
_3531
PfGW456L13_3532 - FIG00955631: hypothetical protein, at 3,974,994 to 3,976,157
_3532
Position (kb)
3972
3973
3974
3975
3976 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3972.338 kb on + strand at 3972.543 kb on + strand at 3972.543 kb on + strand at 3972.543 kb on + strand at 3972.544 kb on - strand at 3972.544 kb on - strand at 3972.544 kb on - strand at 3972.544 kb on - strand at 3972.639 kb on + strand at 3972.672 kb on + strand at 3972.672 kb on + strand at 3972.673 kb on - strand at 3972.791 kb on + strand, within PfGW456L13_3531 at 3972.876 kb on - strand, within PfGW456L13_3531 at 3972.876 kb on - strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.134 kb on + strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.135 kb on - strand, within PfGW456L13_3531 at 3973.138 kb on + strand, within PfGW456L13_3531 at 3973.138 kb on + strand, within PfGW456L13_3531 at 3973.139 kb on - strand, within PfGW456L13_3531 at 3973.139 kb on - strand, within PfGW456L13_3531 at 3973.139 kb on - strand at 3973.139 kb on - strand, within PfGW456L13_3531 at 3973.139 kb on - strand, within PfGW456L13_3531 at 3973.139 kb on - strand, within PfGW456L13_3531 at 3973.140 kb on + strand, within PfGW456L13_3531 at 3973.141 kb on - strand, within PfGW456L13_3531 at 3973.141 kb on - strand, within PfGW456L13_3531 at 3973.263 kb on + strand, within PfGW456L13_3531 at 3973.348 kb on + strand at 3973.456 kb on + strand, within PfGW456L13_3531 at 3973.456 kb on + strand, within PfGW456L13_3531 at 3973.456 kb on + strand, within PfGW456L13_3531 at 3973.669 kb on - strand, within PfGW456L13_3531 at 3973.770 kb on + strand, within PfGW456L13_3531 at 3973.771 kb on - strand, within PfGW456L13_3531 at 3973.771 kb on - strand, within PfGW456L13_3531 at 3973.771 kb on - strand, within PfGW456L13_3531 at 3973.771 kb on - strand, within PfGW456L13_3531 at 3973.771 kb on - strand, within PfGW456L13_3531 at 3973.785 kb on + strand, within PfGW456L13_3531 at 3973.785 kb on + strand, within PfGW456L13_3531 at 3973.785 kb on + strand, within PfGW456L13_3531 at 3973.786 kb on - strand, within PfGW456L13_3531 at 3973.786 kb on - strand, within PfGW456L13_3531 at 3973.786 kb on - strand, within PfGW456L13_3531 at 3973.786 kb on - strand, within PfGW456L13_3531 at 3973.860 kb on + strand, within PfGW456L13_3531 at 3973.861 kb on - strand, within PfGW456L13_3531 at 3973.861 kb on - strand, within PfGW456L13_3531 at 3973.861 kb on - strand, within PfGW456L13_3531 at 3973.879 kb on - strand, within PfGW456L13_3531 at 3973.941 kb on + strand, within PfGW456L13_3531 at 3973.942 kb on - strand, within PfGW456L13_3531 at 3973.975 kb on - strand, within PfGW456L13_3531 at 3973.995 kb on + strand, within PfGW456L13_3531 at 3973.995 kb on + strand, within PfGW456L13_3531 at 3973.995 kb on + strand, within PfGW456L13_3531 at 3974.012 kb on + strand, within PfGW456L13_3531 at 3974.012 kb on + strand, within PfGW456L13_3531 at 3974.012 kb on + strand, within PfGW456L13_3531 at 3974.013 kb on - strand, within PfGW456L13_3531 at 3974.013 kb on - strand, within PfGW456L13_3531 at 3974.013 kb on - strand, within PfGW456L13_3531 at 3974.013 kb on - strand, within PfGW456L13_3531 at 3974.073 kb on + strand, within PfGW456L13_3531 at 3974.157 kb on + strand, within PfGW456L13_3531 at 3974.158 kb on - strand, within PfGW456L13_3531 at 3974.243 kb on + strand, within PfGW456L13_3531 at 3974.244 kb on - strand, within PfGW456L13_3531 at 3974.418 kb on - strand, within PfGW456L13_3531 at 3974.953 kb on + strand at 3974.953 kb on + strand at 3974.954 kb on - strand at 3975.080 kb on - strand at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.349 kb on + strand, within PfGW456L13_3532 at 3975.350 kb on - strand, within PfGW456L13_3532 at 3975.350 kb on - strand, within PfGW456L13_3532 at 3975.350 kb on - strand, within PfGW456L13_3532 at 3975.352 kb on + strand, within PfGW456L13_3532 at 3975.352 kb on + strand, within PfGW456L13_3532 at 3975.352 kb on + strand, within PfGW456L13_3532 at 3975.569 kb on + strand, within PfGW456L13_3532 at 3975.569 kb on + strand, within PfGW456L13_3532 at 3975.569 kb on + strand, within PfGW456L13_3532 at 3975.570 kb on - strand, within PfGW456L13_3532 at 3975.619 kb on + strand, within PfGW456L13_3532 at 3975.619 kb on + strand, within PfGW456L13_3532 at 3975.620 kb on - strand, within PfGW456L13_3532 at 3975.641 kb on - strand, within PfGW456L13_3532 at 3975.641 kb on - strand, within PfGW456L13_3532 at 3975.641 kb on - strand, within PfGW456L13_3532 at 3975.641 kb on - strand, within PfGW456L13_3532 at 3975.644 kb on + strand, within PfGW456L13_3532 at 3975.645 kb on - strand, within PfGW456L13_3532 at 3975.645 kb on - strand, within PfGW456L13_3532 at 3975.925 kb on + strand, within PfGW456L13_3532 at 3975.925 kb on + strand, within PfGW456L13_3532
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 3,972,338 + -0.4 3,972,543 + -1.5 3,972,543 + -2.9 3,972,543 + -1.2 3,972,544 - -2.4 3,972,544 - -0.8 3,972,544 - -0.4 3,972,544 - -1.1 3,972,639 + -2.7 3,972,672 + -1.9 3,972,672 + -3.6 3,972,673 - -1.2 3,972,791 + PfGW456L13_3531 0.14 -2.7 3,972,876 - PfGW456L13_3531 0.17 -1.4 3,972,876 - PfGW456L13_3531 0.17 -2.1 3,973,134 + PfGW456L13_3531 0.27 -3.1 3,973,134 + PfGW456L13_3531 0.27 -1.9 3,973,134 + PfGW456L13_3531 0.27 -0.2 3,973,134 + PfGW456L13_3531 0.27 -1.9 3,973,134 + PfGW456L13_3531 0.27 -2.3 3,973,134 + PfGW456L13_3531 0.27 -2.8 3,973,134 + PfGW456L13_3531 0.27 -1.1 3,973,135 - PfGW456L13_3531 0.27 -1.8 3,973,135 - PfGW456L13_3531 0.27 -2.0 3,973,135 - PfGW456L13_3531 0.27 +0.2 3,973,135 - PfGW456L13_3531 0.27 -0.5 3,973,135 - PfGW456L13_3531 0.27 -1.0 3,973,135 - PfGW456L13_3531 0.27 -2.8 3,973,135 - PfGW456L13_3531 0.27 -2.2 3,973,138 + PfGW456L13_3531 0.27 -2.9 3,973,138 + PfGW456L13_3531 0.27 -2.3 3,973,139 - PfGW456L13_3531 0.27 -1.5 3,973,139 - PfGW456L13_3531 0.27 -3.2 3,973,139 - -0.9 3,973,139 - PfGW456L13_3531 0.27 -0.8 3,973,139 - PfGW456L13_3531 0.27 -1.4 3,973,139 - PfGW456L13_3531 0.27 -3.3 3,973,140 + PfGW456L13_3531 0.27 -1.2 3,973,141 - PfGW456L13_3531 0.27 -1.5 3,973,141 - PfGW456L13_3531 0.27 -1.1 3,973,263 + PfGW456L13_3531 0.32 -0.9 3,973,348 + -1.7 3,973,456 + PfGW456L13_3531 0.40 -2.3 3,973,456 + PfGW456L13_3531 0.40 -3.5 3,973,456 + PfGW456L13_3531 0.40 -1.5 3,973,669 - PfGW456L13_3531 0.48 -1.5 3,973,770 + PfGW456L13_3531 0.52 -1.4 3,973,771 - PfGW456L13_3531 0.52 -2.8 3,973,771 - PfGW456L13_3531 0.52 -0.7 3,973,771 - PfGW456L13_3531 0.52 -0.2 3,973,771 - PfGW456L13_3531 0.52 -3.1 3,973,771 - PfGW456L13_3531 0.52 -1.8 3,973,785 + PfGW456L13_3531 0.52 -2.9 3,973,785 + PfGW456L13_3531 0.52 -1.0 3,973,785 + PfGW456L13_3531 0.52 -3.9 3,973,786 - PfGW456L13_3531 0.52 -2.9 3,973,786 - PfGW456L13_3531 0.52 -0.9 3,973,786 - PfGW456L13_3531 0.52 -3.2 3,973,786 - PfGW456L13_3531 0.52 -2.1 3,973,860 + PfGW456L13_3531 0.55 -0.1 3,973,861 - PfGW456L13_3531 0.55 -2.1 3,973,861 - PfGW456L13_3531 0.55 -1.4 3,973,861 - PfGW456L13_3531 0.55 -2.4 3,973,879 - PfGW456L13_3531 0.56 -1.9 3,973,941 + PfGW456L13_3531 0.58 -1.2 3,973,942 - PfGW456L13_3531 0.58 -1.5 3,973,975 - PfGW456L13_3531 0.60 -2.5 3,973,995 + PfGW456L13_3531 0.60 -1.2 3,973,995 + PfGW456L13_3531 0.60 -1.9 3,973,995 + PfGW456L13_3531 0.60 -2.5 3,974,012 + PfGW456L13_3531 0.61 -1.8 3,974,012 + PfGW456L13_3531 0.61 -2.7 3,974,012 + PfGW456L13_3531 0.61 -2.5 3,974,013 - PfGW456L13_3531 0.61 -1.5 3,974,013 - PfGW456L13_3531 0.61 -1.9 3,974,013 - PfGW456L13_3531 0.61 -2.7 3,974,013 - PfGW456L13_3531 0.61 -4.1 3,974,073 + PfGW456L13_3531 0.63 -3.6 3,974,157 + PfGW456L13_3531 0.67 -1.9 3,974,158 - PfGW456L13_3531 0.67 -3.5 3,974,243 + PfGW456L13_3531 0.70 -2.5 3,974,244 - PfGW456L13_3531 0.70 -1.9 3,974,418 - PfGW456L13_3531 0.77 -1.4 3,974,953 + -2.0 3,974,953 + -2.1 3,974,954 - -2.8 3,975,080 - -0.0 3,975,349 + PfGW456L13_3532 0.30 -1.5 3,975,349 + PfGW456L13_3532 0.30 -2.9 3,975,349 + PfGW456L13_3532 0.30 -2.2 3,975,349 + PfGW456L13_3532 0.30 -1.5 3,975,349 + PfGW456L13_3532 0.30 +0.1 3,975,349 + PfGW456L13_3532 0.30 -2.2 3,975,350 - PfGW456L13_3532 0.31 -2.0 3,975,350 - PfGW456L13_3532 0.31 -2.1 3,975,350 - PfGW456L13_3532 0.31 -0.8 3,975,352 + PfGW456L13_3532 0.31 -1.9 3,975,352 + PfGW456L13_3532 0.31 -2.5 3,975,352 + PfGW456L13_3532 0.31 -2.2 3,975,569 + PfGW456L13_3532 0.49 -3.1 3,975,569 + PfGW456L13_3532 0.49 -0.8 3,975,569 + PfGW456L13_3532 0.49 -1.5 3,975,570 - PfGW456L13_3532 0.49 -1.9 3,975,619 + PfGW456L13_3532 0.54 -3.9 3,975,619 + PfGW456L13_3532 0.54 -1.9 3,975,620 - PfGW456L13_3532 0.54 -2.9 3,975,641 - PfGW456L13_3532 0.56 -1.9 3,975,641 - PfGW456L13_3532 0.56 +0.2 3,975,641 - PfGW456L13_3532 0.56 -0.7 3,975,641 - PfGW456L13_3532 0.56 -1.7 3,975,644 + PfGW456L13_3532 0.56 -1.6 3,975,645 - PfGW456L13_3532 0.56 -1.5 3,975,645 - PfGW456L13_3532 0.56 -2.3 3,975,925 + PfGW456L13_3532 0.80 -2.7 3,975,925 + PfGW456L13_3532 0.80 -0.5
Or see this region's nucleotide sequence