Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_327 and PfGW456L13_328 are separated by 319 nucleotides PfGW456L13_328 and PfGW456L13_329 overlap by 4 nucleotides PfGW456L13_329 and PfGW456L13_330 are separated by 107 nucleotides
PfGW456L13_327 - hypothetical protein, at 383,249 to 383,368
_327
PfGW456L13_328 - Conserved hypothetical protein (perhaps related to histidine degradation), at 383,688 to 384,257
_328
PfGW456L13_329 - Histidine utilization repressor, at 384,254 to 385,003
_329
PfGW456L13_330 - Formiminoglutamic iminohydrolase (EC 3.5.3.13) <small>(from data)</small>, at 385,111 to 386,475
_330
Position (kb) 384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 383.306 kb on + strand, within PfGW456L13_327 at 383.306 kb on + strand, within PfGW456L13_327 at 383.307 kb on - strand, within PfGW456L13_327 at 383.312 kb on + strand, within PfGW456L13_327 at 383.313 kb on - strand, within PfGW456L13_327 at 383.320 kb on + strand, within PfGW456L13_327 at 383.321 kb on - strand, within PfGW456L13_327 at 383.326 kb on + strand, within PfGW456L13_327 at 383.326 kb on + strand, within PfGW456L13_327 at 383.330 kb on + strand, within PfGW456L13_327 at 383.331 kb on - strand, within PfGW456L13_327 at 383.472 kb on - strand at 383.620 kb on + strand at 383.620 kb on + strand at 383.620 kb on + strand at 383.620 kb on + strand at 383.621 kb on - strand at 383.621 kb on - strand at 383.621 kb on - strand at 383.621 kb on - strand at 383.621 kb on - strand at 383.651 kb on + strand at 383.673 kb on + strand at 383.673 kb on + strand at 383.674 kb on - strand at 383.674 kb on - strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.686 kb on + strand at 383.687 kb on - strand at 383.687 kb on - strand at 383.687 kb on - strand at 383.831 kb on + strand, within PfGW456L13_328 at 383.920 kb on + strand, within PfGW456L13_328 at 383.920 kb on + strand, within PfGW456L13_328 at 383.920 kb on + strand, within PfGW456L13_328 at 383.921 kb on - strand, within PfGW456L13_328 at 384.237 kb on + strand at 384.238 kb on - strand at 384.247 kb on - strand at 384.247 kb on - strand at 384.259 kb on + strand at 384.259 kb on + strand at 384.259 kb on + strand at 384.259 kb on + strand at 384.260 kb on - strand at 384.260 kb on - strand at 384.465 kb on + strand, within PfGW456L13_329 at 384.465 kb on + strand, within PfGW456L13_329 at 384.504 kb on + strand, within PfGW456L13_329 at 384.725 kb on + strand, within PfGW456L13_329 at 384.725 kb on + strand, within PfGW456L13_329 at 384.940 kb on - strand at 385.008 kb on - strand at 385.008 kb on - strand at 385.022 kb on + strand at 385.022 kb on + strand at 385.022 kb on + strand at 385.025 kb on + strand at 385.025 kb on + strand at 385.025 kb on + strand at 385.025 kb on + strand at 385.025 kb on + strand at 385.025 kb on + strand at 385.026 kb on - strand at 385.026 kb on - strand at 385.026 kb on - strand at 385.026 kb on - strand at 385.026 kb on - strand at 385.036 kb on - strand at 385.071 kb on + strand at 385.071 kb on + strand at 385.072 kb on - strand at 385.072 kb on - strand at 385.072 kb on - strand at 385.073 kb on + strand at 385.073 kb on + strand at 385.073 kb on + strand at 385.073 kb on + strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.074 kb on - strand at 385.077 kb on + strand at 385.077 kb on + strand at 385.077 kb on + strand at 385.078 kb on - strand at 385.078 kb on - strand at 385.078 kb on - strand at 385.078 kb on - strand at 385.078 kb on - strand at 385.146 kb on + strand at 385.147 kb on - strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.166 kb on + strand at 385.167 kb on - strand at 385.167 kb on - strand at 385.203 kb on + strand at 385.274 kb on + strand, within PfGW456L13_330 at 385.274 kb on + strand, within PfGW456L13_330 at 385.275 kb on - strand, within PfGW456L13_330 at 385.275 kb on - strand, within PfGW456L13_330 at 385.275 kb on - strand, within PfGW456L13_330 at 385.366 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.423 kb on + strand, within PfGW456L13_330 at 385.424 kb on - strand, within PfGW456L13_330 at 385.424 kb on - strand, within PfGW456L13_330 at 385.424 kb on - strand, within PfGW456L13_330 at 385.424 kb on - strand, within PfGW456L13_330 at 385.471 kb on + strand, within PfGW456L13_330 at 385.472 kb on - strand, within PfGW456L13_330 at 385.475 kb on + strand, within PfGW456L13_330 at 385.475 kb on + strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.476 kb on - strand, within PfGW456L13_330 at 385.502 kb on - strand, within PfGW456L13_330 at 385.531 kb on - strand, within PfGW456L13_330 at 385.531 kb on - strand, within PfGW456L13_330 at 385.585 kb on + strand, within PfGW456L13_330 at 385.586 kb on - strand, within PfGW456L13_330 at 385.586 kb on - strand, within PfGW456L13_330 at 385.586 kb on - strand, within PfGW456L13_330 at 385.657 kb on + strand, within PfGW456L13_330 at 385.879 kb on + strand, within PfGW456L13_330 at 385.879 kb on + strand, within PfGW456L13_330
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 383,306 + PfGW456L13_327 0.47 -0.9 383,306 + PfGW456L13_327 0.47 -0.3 383,307 - PfGW456L13_327 0.48 -1.4 383,312 + PfGW456L13_327 0.53 +0.4 383,313 - PfGW456L13_327 0.53 -1.6 383,320 + PfGW456L13_327 0.59 -1.0 383,321 - PfGW456L13_327 0.60 -2.0 383,326 + PfGW456L13_327 0.64 -0.5 383,326 + PfGW456L13_327 0.64 +0.4 383,330 + PfGW456L13_327 0.68 +0.4 383,331 - PfGW456L13_327 0.68 -0.8 383,472 - +1.0 383,620 + +0.2 383,620 + +0.5 383,620 + +0.8 383,620 + -0.5 383,621 - +0.2 383,621 - +0.7 383,621 - -0.4 383,621 - +1.2 383,621 - +0.4 383,651 + +0.9 383,673 + -0.4 383,673 + +0.6 383,674 - -0.9 383,674 - +1.1 383,686 + -1.6 383,686 + -1.9 383,686 + +0.5 383,686 + -0.8 383,686 + +1.2 383,686 + +0.2 383,686 + +0.8 383,687 - +0.1 383,687 - +0.1 383,687 - +1.0 383,831 + PfGW456L13_328 0.25 +0.2 383,920 + PfGW456L13_328 0.41 -0.1 383,920 + PfGW456L13_328 0.41 -0.6 383,920 + PfGW456L13_328 0.41 -0.0 383,921 - PfGW456L13_328 0.41 +1.7 384,237 + +0.4 384,238 - -0.1 384,247 - -0.0 384,247 - +0.7 384,259 + -1.2 384,259 + -0.8 384,259 + -0.0 384,259 + -1.2 384,260 - -1.0 384,260 - -1.4 384,465 + PfGW456L13_329 0.28 -1.6 384,465 + PfGW456L13_329 0.28 -2.4 384,504 + PfGW456L13_329 0.33 -3.7 384,725 + PfGW456L13_329 0.63 -2.1 384,725 + PfGW456L13_329 0.63 -2.2 384,940 - -2.2 385,008 - -1.8 385,008 - -1.4 385,022 + -2.3 385,022 + -3.0 385,022 + -1.6 385,025 + -0.0 385,025 + -2.1 385,025 + -0.8 385,025 + -1.0 385,025 + -2.6 385,025 + -0.9 385,026 - +0.2 385,026 - -0.4 385,026 - -1.4 385,026 - +1.3 385,026 - -1.2 385,036 - +0.9 385,071 + +0.9 385,071 + -0.4 385,072 - +0.2 385,072 - -1.1 385,072 - -0.1 385,073 + +1.0 385,073 + -1.7 385,073 + +1.2 385,073 + +0.9 385,074 - -0.5 385,074 - -1.2 385,074 - -2.9 385,074 - +0.8 385,074 - +0.4 385,074 - +0.2 385,074 - -0.8 385,077 + +0.1 385,077 + +0.0 385,077 + +0.2 385,078 - -0.1 385,078 - -0.7 385,078 - -1.7 385,078 - +0.0 385,078 - -1.8 385,146 + +0.8 385,147 - +0.0 385,166 + +0.8 385,166 + +1.7 385,166 + -0.2 385,166 + -0.0 385,166 + -1.7 385,166 + -0.3 385,166 + -0.3 385,166 + -0.3 385,167 - +0.1 385,167 - -0.0 385,203 + -0.5 385,274 + PfGW456L13_330 0.12 +1.3 385,274 + PfGW456L13_330 0.12 +0.2 385,275 - PfGW456L13_330 0.12 +0.2 385,275 - PfGW456L13_330 0.12 -0.5 385,275 - PfGW456L13_330 0.12 -0.2 385,366 + PfGW456L13_330 0.19 -0.3 385,423 + PfGW456L13_330 0.23 +0.1 385,423 + PfGW456L13_330 0.23 -0.8 385,423 + PfGW456L13_330 0.23 +0.1 385,423 + PfGW456L13_330 0.23 -0.0 385,423 + PfGW456L13_330 0.23 +0.3 385,423 + PfGW456L13_330 0.23 -0.1 385,423 + PfGW456L13_330 0.23 -0.5 385,424 - PfGW456L13_330 0.23 -0.2 385,424 - PfGW456L13_330 0.23 +0.4 385,424 - PfGW456L13_330 0.23 -0.1 385,424 - PfGW456L13_330 0.23 +0.8 385,471 + PfGW456L13_330 0.26 +0.5 385,472 - PfGW456L13_330 0.26 -0.4 385,475 + PfGW456L13_330 0.27 -1.0 385,475 + PfGW456L13_330 0.27 +0.8 385,476 - PfGW456L13_330 0.27 +1.2 385,476 - PfGW456L13_330 0.27 -0.4 385,476 - PfGW456L13_330 0.27 -0.6 385,476 - PfGW456L13_330 0.27 -0.4 385,476 - PfGW456L13_330 0.27 -0.8 385,476 - PfGW456L13_330 0.27 +0.5 385,476 - PfGW456L13_330 0.27 +1.4 385,502 - PfGW456L13_330 0.29 -0.7 385,531 - PfGW456L13_330 0.31 +1.0 385,531 - PfGW456L13_330 0.31 +0.4 385,585 + PfGW456L13_330 0.35 +0.8 385,586 - PfGW456L13_330 0.35 -0.4 385,586 - PfGW456L13_330 0.35 +0.3 385,586 - PfGW456L13_330 0.35 -0.9 385,657 + PfGW456L13_330 0.40 -1.7 385,879 + PfGW456L13_330 0.56 +0.9 385,879 + PfGW456L13_330 0.56 +0.1
Or see this region's nucleotide sequence