Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_274 and PfGW456L13_275 are separated by 10 nucleotides PfGW456L13_275 and PfGW456L13_276 are separated by 151 nucleotides PfGW456L13_276 and PfGW456L13_277 are separated by 31 nucleotides
PfGW456L13_274 - DamX, an inner membrane protein involved in bile resistance, at 321,201 to 322,802
_274
PfGW456L13_275 - 3-dehydroquinate synthase (EC 4.2.3.4), at 322,813 to 323,913
_275
PfGW456L13_276 - Shikimate kinase I (EC 2.7.1.71), at 324,065 to 324,556
_276
PfGW456L13_277 - Type IV pilus biogenesis protein PilQ, at 324,588 to 326,657
_277
Position (kb) 322
323
324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 321.978 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.028 kb on + strand, within PfGW456L13_274 at 322.146 kb on - strand, within PfGW456L13_274 at 322.213 kb on + strand, within PfGW456L13_274 at 322.420 kb on + strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.421 kb on - strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.518 kb on + strand, within PfGW456L13_274 at 322.566 kb on + strand, within PfGW456L13_274 at 322.661 kb on - strand at 322.762 kb on + strand at 322.763 kb on - strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.796 kb on + strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.797 kb on - strand at 322.811 kb on + strand at 322.811 kb on + strand at 322.811 kb on + strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.812 kb on - strand at 322.814 kb on + strand at 322.822 kb on - strand at 322.822 kb on - strand at 322.842 kb on - strand at 322.842 kb on - strand at 322.965 kb on + strand, within PfGW456L13_275 at 322.965 kb on + strand, within PfGW456L13_275 at 322.965 kb on + strand, within PfGW456L13_275 at 323.144 kb on + strand, within PfGW456L13_275 at 323.270 kb on + strand, within PfGW456L13_275 at 323.804 kb on - strand at 323.944 kb on + strand at 323.964 kb on + strand at 324.067 kb on - strand at 324.095 kb on + strand at 324.095 kb on + strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.096 kb on - strand at 324.107 kb on + strand at 324.107 kb on + strand at 324.288 kb on + strand, within PfGW456L13_276 at 324.289 kb on - strand, within PfGW456L13_276 at 324.623 kb on + strand at 324.624 kb on - strand at 324.639 kb on + strand at 324.639 kb on + strand at 324.640 kb on - strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.725 kb on + strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.726 kb on - strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.729 kb on + strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.730 kb on - strand at 324.746 kb on + strand at 324.831 kb on + strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277 at 324.832 kb on - strand, within PfGW456L13_277
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 321,978 + PfGW456L13_274 0.49 -0.9 322,028 + PfGW456L13_274 0.52 -1.9 322,028 + PfGW456L13_274 0.52 +0.5 322,028 + PfGW456L13_274 0.52 -0.6 322,028 + PfGW456L13_274 0.52 -1.1 322,146 - PfGW456L13_274 0.59 -0.4 322,213 + PfGW456L13_274 0.63 +2.4 322,420 + PfGW456L13_274 0.76 -0.3 322,421 - PfGW456L13_274 0.76 -0.1 322,421 - PfGW456L13_274 0.76 -0.5 322,421 - PfGW456L13_274 0.76 -1.3 322,421 - PfGW456L13_274 0.76 -0.7 322,518 + PfGW456L13_274 0.82 -0.1 322,518 + PfGW456L13_274 0.82 -0.0 322,518 + PfGW456L13_274 0.82 -0.1 322,566 + PfGW456L13_274 0.85 -0.3 322,661 - -0.1 322,762 + -0.1 322,763 - -2.6 322,796 + -1.6 322,796 + +0.7 322,796 + +1.0 322,796 + +0.1 322,796 + -0.3 322,796 + +1.0 322,797 - -0.3 322,797 - -0.0 322,797 - +1.6 322,797 - -0.5 322,797 - +0.4 322,797 - -1.2 322,797 - -0.6 322,811 + -0.6 322,811 + +1.1 322,811 + -1.5 322,812 - +0.8 322,812 - -1.2 322,812 - -0.7 322,812 - +0.0 322,812 - -2.2 322,812 - -1.4 322,812 - -2.4 322,814 + +0.2 322,822 - -0.4 322,822 - -1.9 322,842 - -4.1 322,842 - -0.2 322,965 + PfGW456L13_275 0.14 -1.8 322,965 + PfGW456L13_275 0.14 -1.4 322,965 + PfGW456L13_275 0.14 -1.8 323,144 + PfGW456L13_275 0.30 -1.9 323,270 + PfGW456L13_275 0.42 -2.4 323,804 - -1.8 323,944 + -2.5 323,964 + -3.0 324,067 - -1.0 324,095 + -2.6 324,095 + -3.1 324,096 - -2.1 324,096 - -1.4 324,096 - -1.7 324,107 + -3.8 324,107 + -2.2 324,288 + PfGW456L13_276 0.45 -2.8 324,289 - PfGW456L13_276 0.46 -2.8 324,623 + -1.8 324,624 - +0.6 324,639 + -0.7 324,639 + -0.9 324,640 - -0.4 324,725 + -0.5 324,725 + +0.8 324,725 + +0.3 324,725 + +0.7 324,725 + +0.6 324,725 + -0.8 324,725 + +0.2 324,725 + -1.1 324,725 + -0.4 324,725 + -0.3 324,725 + +0.9 324,725 + +1.0 324,725 + -0.1 324,725 + +0.4 324,726 - -0.4 324,726 - -0.8 324,726 - +0.4 324,726 - +0.2 324,726 - +0.7 324,726 - +0.5 324,726 - +0.1 324,726 - +0.6 324,729 + -0.2 324,729 + -1.5 324,729 + +0.5 324,729 + -1.4 324,729 + +0.8 324,729 + +0.2 324,730 - -1.1 324,730 - +0.7 324,730 - -1.7 324,730 - +1.0 324,730 - +0.5 324,746 + -2.1 324,831 + PfGW456L13_277 0.12 -0.3 324,832 - PfGW456L13_277 0.12 +0.7 324,832 - PfGW456L13_277 0.12 +1.4
Or see this region's nucleotide sequence