Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2087

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2086 and PfGW456L13_2087 are separated by 24 nucleotidesPfGW456L13_2087 and PfGW456L13_2088 overlap by 4 nucleotidesPfGW456L13_2088 and PfGW456L13_2089 overlap by 1 nucleotides PfGW456L13_2086 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 2,292,270 to 2,293,280 _2086 PfGW456L13_2087 - FIG002473: Protein YcaR in KDO2-Lipid A biosynthesis cluster, at 2,293,305 to 2,293,490 _2087 PfGW456L13_2088 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 2,293,487 to 2,294,251 _2088 PfGW456L13_2089 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 2,294,251 to 2,294,715 _2089 Position (kb) 2293 2294Strain fitness (log2 ratio) -1 0 1at 2293.278 kb on + strandat 2294.319 kb on + strand, within PfGW456L13_2089at 2294.319 kb on + strand, within PfGW456L13_2089

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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2,293,278 + -0.0
2,294,319 + PfGW456L13_2089 0.15 +0.1
2,294,319 + PfGW456L13_2089 0.15 -0.5

Or see this region's nucleotide sequence