Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1644

Experiment: D-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1643 and PfGW456L13_1644 are separated by 785 nucleotidesPfGW456L13_1644 and PfGW456L13_1645 overlap by 4 nucleotidesPfGW456L13_1645 and PfGW456L13_1646 overlap by 4 nucleotides PfGW456L13_1643 - rRNA small subunit methyltransferase I, at 1,804,000 to 1,804,872 _1643 PfGW456L13_1644 - Cell division protein MraZ, at 1,805,658 to 1,806,113 _1644 PfGW456L13_1645 - rRNA small subunit methyltransferase H, at 1,806,110 to 1,807,057 _1645 PfGW456L13_1646 - Cell division protein FtsL, at 1,807,054 to 1,807,347 _1646 Position (kb) 1805 1806 1807Strain fitness (log2 ratio) -3 -2 -1 0 1at 1804.688 kb on + strand, within PfGW456L13_1643at 1804.688 kb on + strand, within PfGW456L13_1643at 1805.348 kb on - strandat 1805.348 kb on - strandat 1805.363 kb on + strandat 1805.364 kb on - strandat 1805.364 kb on - strandat 1805.391 kb on + strandat 1805.394 kb on + strandat 1805.530 kb on - strandat 1805.578 kb on + strandat 1805.578 kb on + strandat 1805.578 kb on + strandat 1805.578 kb on + strandat 1805.580 kb on + strandat 1805.580 kb on + strandat 1805.822 kb on + strand, within PfGW456L13_1644at 1805.884 kb on + strand, within PfGW456L13_1644at 1805.884 kb on + strand, within PfGW456L13_1644at 1805.894 kb on + strand, within PfGW456L13_1644at 1805.958 kb on + strand, within PfGW456L13_1644at 1805.958 kb on + strand, within PfGW456L13_1644at 1805.972 kb on + strand, within PfGW456L13_1644at 1805.989 kb on + strand, within PfGW456L13_1644

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Alanine (C)
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1,804,688 + PfGW456L13_1643 0.79 -0.8
1,804,688 + PfGW456L13_1643 0.79 +0.1
1,805,348 - +1.3
1,805,348 - +0.0
1,805,363 + -1.8
1,805,364 - -1.8
1,805,364 - -0.1
1,805,391 + -1.8
1,805,394 + -1.8
1,805,530 - -2.4
1,805,578 + -3.2
1,805,578 + -0.6
1,805,578 + -2.3
1,805,578 + -1.2
1,805,580 + -1.8
1,805,580 + -1.6
1,805,822 + PfGW456L13_1644 0.36 -0.7
1,805,884 + PfGW456L13_1644 0.50 +0.2
1,805,884 + PfGW456L13_1644 0.50 -2.2
1,805,894 + PfGW456L13_1644 0.52 -1.8
1,805,958 + PfGW456L13_1644 0.66 -0.8
1,805,958 + PfGW456L13_1644 0.66 -2.4
1,805,972 + PfGW456L13_1644 0.69 +0.0
1,805,989 + PfGW456L13_1644 0.73 -1.7

Or see this region's nucleotide sequence