Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1525

Experiment: D-Alanine (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Alanine (C)
1,676,657	+		PfGW456L13_1524	0.36	-3.5
1,676,658	-		PfGW456L13_1524	0.36	-1.9
1,676,658	-		PfGW456L13_1524	0.36	-2.6
1,676,658	-		PfGW456L13_1524	0.36	-2.6
1,676,658	-		PfGW456L13_1524	0.36	-4.7
1,676,785	+		PfGW456L13_1524	0.45	-2.0
1,677,098	+		PfGW456L13_1524	0.67	-2.6
1,677,217	+		PfGW456L13_1524	0.75	-2.0
1,677,218	-		PfGW456L13_1524	0.75	-2.7
1,677,290	+		PfGW456L13_1524	0.80	-2.6
1,677,290	+		PfGW456L13_1524	0.80	-2.7
1,677,290	+		PfGW456L13_1524	0.80	-3.0
1,677,291	-		PfGW456L13_1524	0.80	-3.1
1,677,341	+		PfGW456L13_1524	0.84	-4.0
1,677,342	-		PfGW456L13_1524	0.84	-2.3
1,677,724	-				+0.3
1,677,724	-				+0.6
1,677,814	+				-1.6
1,677,815	-				-0.7
1,677,933	-		PfGW456L13_1525	0.11	-1.6
1,677,990	+		PfGW456L13_1525	0.13	-1.4
1,677,991	-		PfGW456L13_1525	0.13	-0.4
1,677,991	-		PfGW456L13_1525	0.13	-1.5
1,678,516	+		PfGW456L13_1525	0.31	-2.1
1,678,750	-		PfGW456L13_1525	0.39	-2.7
1,678,750	-		PfGW456L13_1525	0.39	-1.1
1,678,770	+		PfGW456L13_1525	0.40	-4.2
1,678,771	-		PfGW456L13_1525	0.40	-2.0
1,678,866	+		PfGW456L13_1525	0.43	-2.0
1,678,867	-		PfGW456L13_1525	0.43	-0.1
1,678,893	+		PfGW456L13_1525	0.44	-2.7
1,678,894	-		PfGW456L13_1525	0.44	-2.0
1,678,894	-		PfGW456L13_1525	0.44	-3.8
1,678,894	-				-0.4
1,679,157	+		PfGW456L13_1525	0.53	-2.0
1,679,157	+		PfGW456L13_1525	0.53	-1.5
1,679,157	+		PfGW456L13_1525	0.53	-2.1
1,679,157	+		PfGW456L13_1525	0.53	-2.0
1,679,157	+		PfGW456L13_1525	0.53	-3.9
1,679,158	-		PfGW456L13_1525	0.53	-2.1
1,679,158	-		PfGW456L13_1525	0.53	-2.7
1,679,158	-		PfGW456L13_1525	0.53	-1.4
1,679,158	-		PfGW456L13_1525	0.53	-2.9
1,679,158	-		PfGW456L13_1525	0.53	-0.8
1,679,158	-		PfGW456L13_1525	0.53	-2.8
1,679,158	-		PfGW456L13_1525	0.53	-0.9
1,679,158	-		PfGW456L13_1525	0.53	-3.1
1,679,158	-		PfGW456L13_1525	0.53	-1.1
1,679,158	-		PfGW456L13_1525	0.53	-2.0
1,679,158	-		PfGW456L13_1525	0.53	-2.1
1,679,181	+		PfGW456L13_1525	0.54	-2.6
1,679,181	+		PfGW456L13_1525	0.54	-1.4
1,679,182	-		PfGW456L13_1525	0.54	+0.6
1,679,182	-		PfGW456L13_1525	0.54	+0.3
1,679,182	-		PfGW456L13_1525	0.54	+0.8
1,679,182	-		PfGW456L13_1525	0.54	+0.0
1,679,182	-		PfGW456L13_1525	0.54	+0.1
1,679,182	-		PfGW456L13_1525	0.54	-0.3
1,679,290	-		PfGW456L13_1525	0.57	-4.2
1,679,386	-		PfGW456L13_1525	0.61	-1.0
1,679,386	-		PfGW456L13_1525	0.61	-2.4
1,679,451	+		PfGW456L13_1525	0.63	-3.5
1,679,452	-		PfGW456L13_1525	0.63	+0.8
1,679,452	-		PfGW456L13_1525	0.63	-1.0
1,679,478	+		PfGW456L13_1525	0.64	+0.2
1,679,478	+		PfGW456L13_1525	0.64	-1.8
1,679,478	+		PfGW456L13_1525	0.64	-2.0
1,679,479	-		PfGW456L13_1525	0.64	-0.3
1,679,479	-		PfGW456L13_1525	0.64	-1.6
1,679,571	+		PfGW456L13_1525	0.67	-3.4
1,679,572	-		PfGW456L13_1525	0.67	-0.0
1,679,572	-		PfGW456L13_1525	0.67	-3.2
1,679,629	-		PfGW456L13_1525	0.69	-1.1
1,679,629	-		PfGW456L13_1525	0.69	-1.8
1,679,775	+		PfGW456L13_1525	0.74	-2.6
1,679,775	+		PfGW456L13_1525	0.74	-2.3
1,679,775	+		PfGW456L13_1525	0.74	-0.4
1,679,775	+		PfGW456L13_1525	0.74	-2.4
1,679,775	+		PfGW456L13_1525	0.74	-1.6
1,679,775	+		PfGW456L13_1525	0.74	-1.1
1,679,776	-		PfGW456L13_1525	0.74	-1.5
1,679,776	-		PfGW456L13_1525	0.74	-0.5
1,679,776	-		PfGW456L13_1525	0.74	-1.7
1,679,776	-		PfGW456L13_1525	0.74	-3.0
1,679,776	-		PfGW456L13_1525	0.74	-2.4
1,679,776	-		PfGW456L13_1525	0.74	-1.5
1,679,776	-		PfGW456L13_1525	0.74	-2.7
1,679,776	-		PfGW456L13_1525	0.74	-1.1
1,679,776	-		PfGW456L13_1525	0.74	-1.0
1,679,776	-		PfGW456L13_1525	0.74	-1.4
1,679,776	-		PfGW456L13_1525	0.74	-0.8
1,679,776	-		PfGW456L13_1525	0.74	-1.1
1,679,925	+		PfGW456L13_1525	0.79	-3.5
1,679,925	+		PfGW456L13_1525	0.79	-3.4
1,679,934	+		PfGW456L13_1525	0.79	-1.4
1,679,934	+		PfGW456L13_1525	0.79	-1.8
1,679,934	+		PfGW456L13_1525	0.79	-2.0
1,679,935	-		PfGW456L13_1525	0.79	-4.2
1,680,059	-		PfGW456L13_1525	0.84	+2.8
1,680,095	+		PfGW456L13_1525	0.85	-2.3
1,680,165	-		PfGW456L13_1525	0.87	-0.8
1,680,208	+		PfGW456L13_1525	0.89	-2.5
1,680,209	-		PfGW456L13_1525	0.89	-1.8
1,680,255	+				-2.7
1,680,256	-				-1.1
1,680,256	-				-1.6
1,680,256	-				-4.0
1,680,256	-				-0.9
1,680,256	-				-1.3
1,680,256	-				-3.6
1,680,327	+				-0.8
1,680,328	-				-1.7
1,680,357	+				-1.4
1,680,399	+				-1.6
1,680,420	+				-3.2
1,680,420	+				-3.6
1,680,420	+				-2.4
1,680,421	-				-0.4
1,680,421	-				-1.7
1,680,421	-				-1.0
1,680,421	-				-2.1
1,680,421	-				-1.2
1,680,421	-				-2.6
1,680,501	+				-2.3
1,680,502	-				-1.7
1,680,535	+				-3.8
1,680,536	-				-1.0
1,680,604	+		PfGW456L13_1526	0.40	-0.8
1,680,604	+		PfGW456L13_1526	0.40	-0.7
1,680,605	-		PfGW456L13_1526	0.40	-2.1
1,680,605	-		PfGW456L13_1526	0.40	-2.8
1,680,605	-		PfGW456L13_1526	0.40	-2.1
1,680,667	+		PfGW456L13_1526	0.75	-0.7
1,680,667	+		PfGW456L13_1526	0.75	-1.5
1,680,667	+		PfGW456L13_1526	0.75	-1.0
1,680,668	-		PfGW456L13_1526	0.76	-1.8
1,680,668	-		PfGW456L13_1526	0.76	-2.3
1,680,679	-		PfGW456L13_1526	0.82	-2.9
1,680,700	+				-0.4
1,680,700	+				-1.5
1,680,701	-				-2.4
1,680,701	-				-2.7
1,680,706	+				-1.6
1,680,706	+				-0.9
1,680,706	+				-1.9
1,680,706	+				-0.0
1,680,706	+				-1.6
1,680,706	+				-2.2
1,680,706	+				-2.1
1,680,706	+				-0.8
1,680,706	+				-1.0
1,680,706	+				-1.8
1,680,706	+				-0.4
1,680,706	+				-0.1
1,680,706	+				-1.4
1,680,706	+				-0.0
1,680,706	+				-1.1
1,680,707	-				-3.3
1,680,707	-				-1.6
1,680,707	-				-2.6
1,680,707	-				-1.4
1,680,707	-				-2.4
1,680,707	-				-2.1
1,680,707	-				-2.6
1,680,707	-				-1.1
1,680,707	-				-1.1
1,680,707	-				-3.0
1,680,707	-				-3.3
1,680,707	-				-1.6
1,680,707	-				-1.7
1,680,707	-				-1.2
1,680,707	-				-2.9
1,680,707	-				-1.5
1,680,707	-				-1.5
1,680,707	-				-3.5
1,680,707	-				-1.8
1,680,707	-				-1.0
1,680,707	-				-1.0
1,680,707	-				-1.8
1,680,707	-				-1.0
1,680,707	-				-0.7
1,680,707	-				-3.4
1,680,707	-				-0.7
1,680,707	-				-1.4
1,680,707	-				-3.7
1,680,707	-				-1.9
1,680,728	-				-0.4
1,680,794	+				+1.4
1,680,794	+				+0.6
1,680,794	+				-0.6
1,680,794	+				+0.1
1,680,794	+				+0.0
1,680,794	+				-0.4
1,680,795	-				-1.3
1,680,795	-				-1.7
1,680,795	-				-2.0
1,680,795	-				-1.6
1,680,795	-				-0.6
1,680,795	-				-1.4
1,680,795	-				-2.7
1,680,795	-				-1.8
1,680,795	-				-1.1
1,680,795	-				-2.8
1,680,795	-				+0.2
1,680,885	+		PfGW456L13_1527	0.11	+0.2
1,680,886	-		PfGW456L13_1527	0.11	-1.0
1,680,978	+		PfGW456L13_1527	0.21	-0.4
1,680,985	+		PfGW456L13_1527	0.22	-0.3
1,681,024	+		PfGW456L13_1527	0.26	+0.5
1,681,024	+		PfGW456L13_1527	0.26	+0.9
1,681,033	-		PfGW456L13_1527	0.27	-0.2
1,681,033	-		PfGW456L13_1527	0.27	-1.8
1,681,068	+		PfGW456L13_1527	0.31	+0.1
1,681,068	+		PfGW456L13_1527	0.31	-0.4
1,681,068	+		PfGW456L13_1527	0.31	+1.8
1,681,069	-		PfGW456L13_1527	0.31	-1.0
1,681,161	+		PfGW456L13_1527	0.42	+0.3
1,681,167	+		PfGW456L13_1527	0.42	+0.0
1,681,167	+		PfGW456L13_1527	0.42	+0.4
1,681,167	+		PfGW456L13_1527	0.42	-0.4
1,681,257	+		PfGW456L13_1527	0.52	+0.4
1,681,257	+		PfGW456L13_1527	0.52	+0.9
1,681,257	+		PfGW456L13_1527	0.52	+0.1
1,681,257	+		PfGW456L13_1527	0.52	-0.2
1,681,258	-		PfGW456L13_1527	0.52	-1.1
1,681,381	-		PfGW456L13_1527	0.66	-2.1
1,681,422	+		PfGW456L13_1527	0.71	-1.1
1,681,422	+		PfGW456L13_1527	0.71	-0.1
1,681,476	+		PfGW456L13_1527	0.77	+0.4
1,681,476	+		PfGW456L13_1527	0.77	-0.5
1,681,476	+		PfGW456L13_1527	0.77	+0.3