Experiment: D-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_149 and PfGW456L13_150 overlap by 48 nucleotides PfGW456L13_150 and PfGW456L13_151 are separated by 261 nucleotides PfGW456L13_151 and PfGW456L13_152 overlap by 1 nucleotides
PfGW456L13_149 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 173,654 to 174,748
_149
PfGW456L13_150 - hypothetical protein, at 174,701 to 174,892
_150
PfGW456L13_151 - HflC protein, at 175,154 to 176,023
_151
PfGW456L13_152 - HflK protein, at 176,023 to 177,198
_152
Position (kb) 175
176
177 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.245 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.266 kb on - strand, within PfGW456L13_149 at 174.337 kb on - strand, within PfGW456L13_149 at 174.448 kb on - strand, within PfGW456L13_149 at 174.526 kb on - strand, within PfGW456L13_149 at 174.560 kb on - strand, within PfGW456L13_149 at 174.560 kb on - strand, within PfGW456L13_149 at 174.694 kb on - strand at 174.773 kb on - strand, within PfGW456L13_150 at 174.843 kb on - strand, within PfGW456L13_150 at 174.855 kb on - strand, within PfGW456L13_150 at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.078 kb on - strand at 175.116 kb on + strand at 175.116 kb on + strand at 175.177 kb on - strand at 175.177 kb on - strand at 175.260 kb on + strand, within PfGW456L13_151 at 175.261 kb on - strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.269 kb on + strand, within PfGW456L13_151 at 175.270 kb on - strand, within PfGW456L13_151 at 175.302 kb on + strand, within PfGW456L13_151 at 175.582 kb on + strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.723 kb on - strand, within PfGW456L13_151 at 175.725 kb on + strand, within PfGW456L13_151 at 175.953 kb on + strand at 175.954 kb on - strand at 175.954 kb on - strand at 175.954 kb on - strand at 176.015 kb on - strand at 176.040 kb on + strand at 176.041 kb on - strand at 176.418 kb on - strand, within PfGW456L13_152 at 176.418 kb on - strand, within PfGW456L13_152 at 176.515 kb on + strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.736 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.832 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.856 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.886 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.889 kb on - strand, within PfGW456L13_152 at 176.937 kb on - strand, within PfGW456L13_152
Per-strain Table
Position Strand Gene LocusTag Fraction D-Alanine (C) remove 174,245 - PfGW456L13_149 0.54 -3.6 174,245 - PfGW456L13_149 0.54 -3.1 174,245 - PfGW456L13_149 0.54 -3.7 174,245 - PfGW456L13_149 0.54 -2.8 174,266 - PfGW456L13_149 0.56 -4.8 174,266 - PfGW456L13_149 0.56 -1.8 174,266 - PfGW456L13_149 0.56 +0.3 174,266 - PfGW456L13_149 0.56 -3.6 174,337 - PfGW456L13_149 0.62 -3.9 174,448 - PfGW456L13_149 0.73 -2.5 174,526 - PfGW456L13_149 0.80 -3.8 174,560 - PfGW456L13_149 0.83 -3.5 174,560 - PfGW456L13_149 0.83 -3.4 174,694 - -2.4 174,773 - PfGW456L13_150 0.38 +0.0 174,843 - PfGW456L13_150 0.74 -4.6 174,855 - PfGW456L13_150 0.80 -0.6 175,078 - +0.4 175,078 - -0.1 175,078 - +0.9 175,078 - -0.9 175,078 - +1.2 175,078 - +0.6 175,078 - +1.3 175,078 - +1.4 175,078 - +0.0 175,116 + -0.4 175,116 + -0.0 175,177 - -2.1 175,177 - -3.0 175,260 + PfGW456L13_151 0.12 -2.2 175,261 - PfGW456L13_151 0.12 -1.0 175,269 + PfGW456L13_151 0.13 -2.5 175,269 + PfGW456L13_151 0.13 +0.5 175,270 - PfGW456L13_151 0.13 -2.4 175,302 + PfGW456L13_151 0.17 -2.5 175,582 + PfGW456L13_151 0.49 -1.0 175,723 - PfGW456L13_151 0.65 -1.3 175,723 - PfGW456L13_151 0.65 -2.4 175,723 - PfGW456L13_151 0.65 -1.0 175,725 + PfGW456L13_151 0.66 -1.5 175,953 + -2.8 175,954 - -2.4 175,954 - -1.5 175,954 - -0.8 176,015 - -0.3 176,040 + -1.3 176,041 - -2.3 176,418 - PfGW456L13_152 0.34 -1.1 176,418 - PfGW456L13_152 0.34 -1.3 176,515 + PfGW456L13_152 0.42 -2.1 176,736 - PfGW456L13_152 0.61 -1.5 176,736 - PfGW456L13_152 0.61 -1.5 176,736 - PfGW456L13_152 0.61 -2.0 176,832 - PfGW456L13_152 0.69 -1.8 176,832 - PfGW456L13_152 0.69 -0.1 176,832 - PfGW456L13_152 0.69 -2.7 176,832 - PfGW456L13_152 0.69 -1.1 176,832 - PfGW456L13_152 0.69 -0.4 176,856 - PfGW456L13_152 0.71 -0.7 176,856 - PfGW456L13_152 0.71 -2.1 176,856 - PfGW456L13_152 0.71 -1.0 176,856 - PfGW456L13_152 0.71 -0.7 176,886 - PfGW456L13_152 0.73 -1.5 176,886 - PfGW456L13_152 0.73 -0.7 176,889 - PfGW456L13_152 0.74 -2.8 176,889 - PfGW456L13_152 0.74 -2.1 176,937 - PfGW456L13_152 0.78 -1.5
Or see this region's nucleotide sequence