Strain Fitness in Pseudomonas simiae WCS417 around PS417_02775

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02770 and PS417_02775 are separated by 135 nucleotidesPS417_02775 and PS417_02780 are separated by 238 nucleotides PS417_02770: PS417_02770 - membrane protein, at 629,599 to 630,612 _02770 PS417_02775: PS417_02775 - heat-shock protein, at 630,748 to 632,016 _02775 PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199 _02780 Position (kb) 630 631 632 633Strain fitness (log2 ratio) -2 -1 0 1at 629.822 kb on + strand, within PS417_02770at 629.823 kb on - strand, within PS417_02770at 630.445 kb on + strand, within PS417_02770at 630.807 kb on + strandat 631.268 kb on + strand, within PS417_02775at 631.268 kb on + strand, within PS417_02775at 631.269 kb on - strand, within PS417_02775at 631.826 kb on + strand, within PS417_02775at 631.827 kb on - strand, within PS417_02775at 631.850 kb on + strand, within PS417_02775at 631.850 kb on + strand, within PS417_02775at 632.020 kb on + strandat 632.054 kb on + strandat 632.054 kb on + strandat 632.054 kb on + strandat 632.054 kb on + strandat 632.054 kb on + strandat 632.055 kb on - strandat 632.055 kb on - strandat 632.055 kb on - strandat 632.055 kb on - strandat 632.055 kb on - strandat 632.055 kb on - strandat 632.078 kb on - strandat 632.138 kb on + strandat 632.259 kb on - strandat 632.270 kb on + strandat 632.271 kb on - strandat 632.273 kb on + strandat 632.274 kb on - strandat 632.274 kb on - strandat 632.274 kb on - strandat 632.411 kb on + strand, within PS417_02780at 632.411 kb on + strand, within PS417_02780at 632.411 kb on + strand, within PS417_02780at 632.412 kb on - strand, within PS417_02780at 632.412 kb on - strand, within PS417_02780at 632.633 kb on - strand, within PS417_02780

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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629,822 + PS417_02770 0.22 +0.4
629,823 - PS417_02770 0.22 -0.5
630,445 + PS417_02770 0.83 +0.2
630,807 + -0.3
631,268 + PS417_02775 0.41 -0.9
631,268 + PS417_02775 0.41 -0.3
631,269 - PS417_02775 0.41 -0.3
631,826 + PS417_02775 0.85 -0.1
631,827 - PS417_02775 0.85 +0.1
631,850 + PS417_02775 0.87 -0.7
631,850 + PS417_02775 0.87 -0.6
632,020 + -0.4
632,054 + -0.3
632,054 + -0.2
632,054 + +0.3
632,054 + +0.1
632,054 + +0.9
632,055 - +0.4
632,055 - +0.4
632,055 - +1.6
632,055 - +0.3
632,055 - +0.3
632,055 - +0.1
632,078 - +0.1
632,138 + -0.6
632,259 - +0.2
632,270 + +0.9
632,271 - +1.6
632,273 + +0.5
632,274 - -2.5
632,274 - +0.2
632,274 - -0.6
632,411 + PS417_02780 0.17 -0.1
632,411 + PS417_02780 0.17 +0.1
632,411 + PS417_02780 0.17 -0.3
632,412 - PS417_02780 0.17 +0.6
632,412 - PS417_02780 0.17 -0.8
632,633 - PS417_02780 0.40 -0.1

Or see this region's nucleotide sequence