Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0903

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0902 and Echvi_0903 are separated by 76 nucleotidesEchvi_0903 and Echvi_0904 overlap by 8 nucleotidesEchvi_0904 and Echvi_0905 are separated by 64 nucleotides Echvi_0902: Echvi_0902 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 1,028,108 to 1,029,700 _0902 Echvi_0903: Echvi_0903 - Glycosyltransferases involved in cell wall biogenesis, at 1,029,777 to 1,030,766 _0903 Echvi_0904: Echvi_0904 - conserved hypothetical protein, at 1,030,759 to 1,031,634 _0904 Echvi_0905: Echvi_0905 - hypothetical protein, at 1,031,699 to 1,031,842 _0905 Position (kb) 1029 1030 1031Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1028.834 kb on + strand, within Echvi_0902at 1028.834 kb on + strand, within Echvi_0902at 1028.839 kb on + strand, within Echvi_0902at 1028.839 kb on + strand, within Echvi_0902at 1028.839 kb on + strand, within Echvi_0902at 1028.839 kb on + strand, within Echvi_0902at 1028.840 kb on - strand, within Echvi_0902at 1028.840 kb on - strand, within Echvi_0902at 1028.959 kb on + strand, within Echvi_0902at 1028.960 kb on - strand, within Echvi_0902at 1029.014 kb on + strand, within Echvi_0902at 1029.015 kb on - strand, within Echvi_0902at 1029.015 kb on - strand, within Echvi_0902at 1029.015 kb on - strand, within Echvi_0902at 1029.015 kb on - strand, within Echvi_0902at 1029.015 kb on - strand, within Echvi_0902at 1029.018 kb on + strand, within Echvi_0902at 1029.018 kb on + strand, within Echvi_0902at 1029.019 kb on - strand, within Echvi_0902at 1029.019 kb on - strand, within Echvi_0902at 1029.019 kb on - strand, within Echvi_0902at 1029.115 kb on - strand, within Echvi_0902at 1029.189 kb on + strand, within Echvi_0902at 1029.190 kb on - strand, within Echvi_0902at 1029.190 kb on - strand, within Echvi_0902at 1029.190 kb on - strand, within Echvi_0902at 1029.241 kb on - strand, within Echvi_0902at 1029.241 kb on - strand, within Echvi_0902at 1029.241 kb on - strand, within Echvi_0902at 1029.265 kb on + strand, within Echvi_0902at 1029.265 kb on + strand, within Echvi_0902at 1029.298 kb on + strand, within Echvi_0902at 1029.299 kb on - strand, within Echvi_0902at 1029.312 kb on + strand, within Echvi_0902at 1029.312 kb on + strand, within Echvi_0902at 1029.331 kb on + strandat 1029.331 kb on + strand, within Echvi_0902at 1029.331 kb on + strand, within Echvi_0902at 1029.390 kb on + strand, within Echvi_0902at 1029.391 kb on - strand, within Echvi_0902at 1029.391 kb on - strand, within Echvi_0902at 1029.394 kb on + strand, within Echvi_0902at 1029.394 kb on + strand, within Echvi_0902at 1029.394 kb on + strand, within Echvi_0902at 1029.455 kb on - strand, within Echvi_0902at 1029.469 kb on - strand, within Echvi_0902at 1029.489 kb on + strand, within Echvi_0902at 1029.527 kb on - strand, within Echvi_0902at 1029.608 kb on - strandat 1029.608 kb on - strandat 1029.608 kb on - strandat 1029.622 kb on + strandat 1029.623 kb on - strandat 1029.700 kb on + strandat 1029.801 kb on - strandat 1029.824 kb on + strandat 1029.824 kb on + strandat 1029.824 kb on + strandat 1029.825 kb on - strandat 1029.825 kb on - strandat 1029.825 kb on - strandat 1029.825 kb on - strandat 1029.825 kb on - strandat 1029.879 kb on - strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.892 kb on + strand, within Echvi_0903at 1029.893 kb on - strand, within Echvi_0903at 1029.893 kb on - strand, within Echvi_0903at 1029.893 kb on - strand, within Echvi_0903at 1029.893 kb on - strand, within Echvi_0903at 1029.903 kb on + strand, within Echvi_0903at 1029.927 kb on + strand, within Echvi_0903at 1030.030 kb on - strand, within Echvi_0903at 1030.030 kb on - strand, within Echvi_0903at 1030.080 kb on + strand, within Echvi_0903at 1030.080 kb on + strand, within Echvi_0903at 1030.080 kb on + strand, within Echvi_0903at 1030.080 kb on + strand, within Echvi_0903at 1030.080 kb on + strand, within Echvi_0903at 1030.081 kb on - strand, within Echvi_0903at 1030.081 kb on - strand, within Echvi_0903at 1030.081 kb on - strand, within Echvi_0903at 1030.081 kb on - strand, within Echvi_0903at 1030.082 kb on + strand, within Echvi_0903at 1030.083 kb on - strand, within Echvi_0903at 1030.266 kb on + strand, within Echvi_0903at 1030.278 kb on + strand, within Echvi_0903at 1030.299 kb on + strand, within Echvi_0903at 1030.300 kb on - strand, within Echvi_0903at 1030.310 kb on + strand, within Echvi_0903at 1030.353 kb on - strand, within Echvi_0903at 1030.353 kb on - strand, within Echvi_0903at 1030.396 kb on + strand, within Echvi_0903at 1030.396 kb on + strand, within Echvi_0903at 1030.396 kb on + strand, within Echvi_0903at 1030.397 kb on - strand, within Echvi_0903at 1030.397 kb on - strand, within Echvi_0903at 1030.397 kb on - strand, within Echvi_0903at 1030.458 kb on - strand, within Echvi_0903at 1030.476 kb on - strand, within Echvi_0903at 1030.501 kb on - strand, within Echvi_0903at 1030.576 kb on - strand, within Echvi_0903at 1030.633 kb on + strand, within Echvi_0903at 1030.707 kb on + strandat 1030.708 kb on - strandat 1030.734 kb on + strandat 1030.734 kb on + strandat 1030.734 kb on + strandat 1030.734 kb on + strandat 1030.734 kb on + strandat 1030.734 kb on + strandat 1030.735 kb on - strandat 1030.781 kb on + strandat 1030.816 kb on + strandat 1030.817 kb on - strandat 1030.817 kb on - strandat 1030.817 kb on - strandat 1031.017 kb on + strand, within Echvi_0904at 1031.019 kb on + strand, within Echvi_0904at 1031.042 kb on + strand, within Echvi_0904at 1031.042 kb on + strand, within Echvi_0904at 1031.057 kb on - strand, within Echvi_0904at 1031.063 kb on + strand, within Echvi_0904at 1031.063 kb on + strand, within Echvi_0904at 1031.063 kb on + strand, within Echvi_0904at 1031.063 kb on + strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.064 kb on - strand, within Echvi_0904at 1031.065 kb on + strand, within Echvi_0904at 1031.074 kb on - strand, within Echvi_0904at 1031.143 kb on - strand, within Echvi_0904at 1031.307 kb on + strand, within Echvi_0904at 1031.307 kb on + strand, within Echvi_0904at 1031.307 kb on + strand, within Echvi_0904at 1031.307 kb on + strand, within Echvi_0904at 1031.308 kb on - strand, within Echvi_0904at 1031.308 kb on - strand, within Echvi_0904at 1031.308 kb on - strand, within Echvi_0904at 1031.316 kb on + strand, within Echvi_0904at 1031.326 kb on + strand, within Echvi_0904at 1031.328 kb on + strand, within Echvi_0904at 1031.328 kb on + strand, within Echvi_0904at 1031.328 kb on + strand, within Echvi_0904at 1031.329 kb on - strand, within Echvi_0904at 1031.329 kb on - strand, within Echvi_0904at 1031.375 kb on + strand, within Echvi_0904at 1031.442 kb on - strand, within Echvi_0904at 1031.493 kb on + strand, within Echvi_0904at 1031.493 kb on + strand, within Echvi_0904at 1031.493 kb on + strand, within Echvi_0904at 1031.509 kb on + strand, within Echvi_0904at 1031.509 kb on + strand, within Echvi_0904at 1031.509 kb on + strand, within Echvi_0904at 1031.509 kb on + strand, within Echvi_0904at 1031.510 kb on - strand, within Echvi_0904at 1031.510 kb on - strand, within Echvi_0904at 1031.510 kb on - strand, within Echvi_0904at 1031.511 kb on + strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.512 kb on - strand, within Echvi_0904at 1031.550 kb on - strandat 1031.632 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,028,834 + Echvi_0902 0.46 -0.2
1,028,834 + Echvi_0902 0.46 +0.3
1,028,839 + Echvi_0902 0.46 -1.1
1,028,839 + Echvi_0902 0.46 +0.2
1,028,839 + Echvi_0902 0.46 +0.4
1,028,839 + Echvi_0902 0.46 +0.1
1,028,840 - Echvi_0902 0.46 +1.3
1,028,840 - Echvi_0902 0.46 +0.1
1,028,959 + Echvi_0902 0.53 -0.2
1,028,960 - Echvi_0902 0.53 +0.6
1,029,014 + Echvi_0902 0.57 +0.4
1,029,015 - Echvi_0902 0.57 +0.2
1,029,015 - Echvi_0902 0.57 +3.0
1,029,015 - Echvi_0902 0.57 -0.6
1,029,015 - Echvi_0902 0.57 -1.0
1,029,015 - Echvi_0902 0.57 +0.1
1,029,018 + Echvi_0902 0.57 -0.2
1,029,018 + Echvi_0902 0.57 -1.3
1,029,019 - Echvi_0902 0.57 +0.3
1,029,019 - Echvi_0902 0.57 +0.4
1,029,019 - Echvi_0902 0.57 +1.0
1,029,115 - Echvi_0902 0.63 +0.8
1,029,189 + Echvi_0902 0.68 -0.4
1,029,190 - Echvi_0902 0.68 +1.0
1,029,190 - Echvi_0902 0.68 -0.6
1,029,190 - Echvi_0902 0.68 +1.1
1,029,241 - Echvi_0902 0.71 -0.9
1,029,241 - Echvi_0902 0.71 +0.3
1,029,241 - Echvi_0902 0.71 +0.4
1,029,265 + Echvi_0902 0.73 -0.3
1,029,265 + Echvi_0902 0.73 -0.3
1,029,298 + Echvi_0902 0.75 +1.4
1,029,299 - Echvi_0902 0.75 -1.2
1,029,312 + Echvi_0902 0.76 +0.6
1,029,312 + Echvi_0902 0.76 -1.0
1,029,331 + +0.4
1,029,331 + Echvi_0902 0.77 -0.5
1,029,331 + Echvi_0902 0.77 -0.1
1,029,390 + Echvi_0902 0.80 +0.9
1,029,391 - Echvi_0902 0.81 -3.0
1,029,391 - Echvi_0902 0.81 -0.3
1,029,394 + Echvi_0902 0.81 +0.7
1,029,394 + Echvi_0902 0.81 -0.9
1,029,394 + Echvi_0902 0.81 +1.0
1,029,455 - Echvi_0902 0.85 -0.2
1,029,469 - Echvi_0902 0.85 +0.1
1,029,489 + Echvi_0902 0.87 +0.6
1,029,527 - Echvi_0902 0.89 -0.5
1,029,608 - +0.3
1,029,608 - +0.1
1,029,608 - -0.4
1,029,622 + -0.6
1,029,623 - +3.3
1,029,700 + -1.7
1,029,801 - -0.0
1,029,824 + -0.1
1,029,824 + -1.1
1,029,824 + -0.5
1,029,825 - -1.0
1,029,825 - +0.9
1,029,825 - +2.0
1,029,825 - +1.0
1,029,825 - +0.6
1,029,879 - Echvi_0903 0.10 -0.6
1,029,892 + Echvi_0903 0.12 +2.0
1,029,892 + Echvi_0903 0.12 -1.0
1,029,892 + Echvi_0903 0.12 -1.2
1,029,892 + Echvi_0903 0.12 -0.4
1,029,892 + Echvi_0903 0.12 +1.1
1,029,892 + Echvi_0903 0.12 -0.5
1,029,893 - Echvi_0903 0.12 -1.3
1,029,893 - Echvi_0903 0.12 +1.6
1,029,893 - Echvi_0903 0.12 +1.7
1,029,893 - Echvi_0903 0.12 -1.3
1,029,903 + Echvi_0903 0.13 +0.4
1,029,927 + Echvi_0903 0.15 +0.3
1,030,030 - Echvi_0903 0.26 -0.3
1,030,030 - Echvi_0903 0.26 +0.5
1,030,080 + Echvi_0903 0.31 -1.2
1,030,080 + Echvi_0903 0.31 +1.2
1,030,080 + Echvi_0903 0.31 +0.9
1,030,080 + Echvi_0903 0.31 +0.3
1,030,080 + Echvi_0903 0.31 -1.4
1,030,081 - Echvi_0903 0.31 +1.9
1,030,081 - Echvi_0903 0.31 +0.6
1,030,081 - Echvi_0903 0.31 +0.3
1,030,081 - Echvi_0903 0.31 -0.0
1,030,082 + Echvi_0903 0.31 +0.5
1,030,083 - Echvi_0903 0.31 +0.5
1,030,266 + Echvi_0903 0.49 -1.0
1,030,278 + Echvi_0903 0.51 -1.8
1,030,299 + Echvi_0903 0.53 +1.2
1,030,300 - Echvi_0903 0.53 -1.1
1,030,310 + Echvi_0903 0.54 +1.2
1,030,353 - Echvi_0903 0.58 +0.3
1,030,353 - Echvi_0903 0.58 -0.4
1,030,396 + Echvi_0903 0.63 +2.0
1,030,396 + Echvi_0903 0.63 -0.3
1,030,396 + Echvi_0903 0.63 +1.3
1,030,397 - Echvi_0903 0.63 -1.3
1,030,397 - Echvi_0903 0.63 +0.5
1,030,397 - Echvi_0903 0.63 +0.0
1,030,458 - Echvi_0903 0.69 +0.1
1,030,476 - Echvi_0903 0.71 +0.3
1,030,501 - Echvi_0903 0.73 +0.7
1,030,576 - Echvi_0903 0.81 +3.3
1,030,633 + Echvi_0903 0.86 +0.7
1,030,707 + -0.7
1,030,708 - +0.5
1,030,734 + +1.1
1,030,734 + -1.1
1,030,734 + -0.6
1,030,734 + -0.0
1,030,734 + -1.6
1,030,734 + +0.7
1,030,735 - +0.3
1,030,781 + +0.1
1,030,816 + -0.3
1,030,817 - -1.1
1,030,817 - -2.0
1,030,817 - -0.3
1,031,017 + Echvi_0904 0.29 -0.0
1,031,019 + Echvi_0904 0.30 +0.8
1,031,042 + Echvi_0904 0.32 +2.0
1,031,042 + Echvi_0904 0.32 -2.3
1,031,057 - Echvi_0904 0.34 -0.2
1,031,063 + Echvi_0904 0.35 -0.8
1,031,063 + Echvi_0904 0.35 -0.5
1,031,063 + Echvi_0904 0.35 +0.0
1,031,063 + Echvi_0904 0.35 +0.4
1,031,064 - Echvi_0904 0.35 +0.7
1,031,064 - Echvi_0904 0.35 -0.0
1,031,064 - Echvi_0904 0.35 +1.5
1,031,064 - Echvi_0904 0.35 +0.3
1,031,064 - Echvi_0904 0.35 -0.8
1,031,064 - Echvi_0904 0.35 +0.7
1,031,064 - Echvi_0904 0.35 +1.8
1,031,064 - Echvi_0904 0.35 +0.6
1,031,064 - Echvi_0904 0.35 +0.4
1,031,065 + Echvi_0904 0.35 +1.1
1,031,074 - Echvi_0904 0.36 -0.1
1,031,143 - Echvi_0904 0.44 +0.8
1,031,307 + Echvi_0904 0.63 -0.1
1,031,307 + Echvi_0904 0.63 +0.2
1,031,307 + Echvi_0904 0.63 -0.1
1,031,307 + Echvi_0904 0.63 +0.2
1,031,308 - Echvi_0904 0.63 -0.1
1,031,308 - Echvi_0904 0.63 -0.2
1,031,308 - Echvi_0904 0.63 +0.4
1,031,316 + Echvi_0904 0.64 -0.4
1,031,326 + Echvi_0904 0.65 -0.1
1,031,328 + Echvi_0904 0.65 -0.1
1,031,328 + Echvi_0904 0.65 -0.1
1,031,328 + Echvi_0904 0.65 -0.4
1,031,329 - Echvi_0904 0.65 +0.6
1,031,329 - Echvi_0904 0.65 +0.3
1,031,375 + Echvi_0904 0.70 +0.7
1,031,442 - Echvi_0904 0.78 +1.5
1,031,493 + Echvi_0904 0.84 +1.3
1,031,493 + Echvi_0904 0.84 -0.5
1,031,493 + Echvi_0904 0.84 +0.3
1,031,509 + Echvi_0904 0.86 +0.7
1,031,509 + Echvi_0904 0.86 +1.5
1,031,509 + Echvi_0904 0.86 +0.4
1,031,509 + Echvi_0904 0.86 +0.1
1,031,510 - Echvi_0904 0.86 +0.4
1,031,510 - Echvi_0904 0.86 -0.3
1,031,510 - Echvi_0904 0.86 +0.7
1,031,511 + Echvi_0904 0.86 +0.1
1,031,512 - Echvi_0904 0.86 -0.1
1,031,512 - Echvi_0904 0.86 -0.5
1,031,512 - Echvi_0904 0.86 -1.3
1,031,512 - Echvi_0904 0.86 +1.5
1,031,512 - Echvi_0904 0.86 -0.7
1,031,512 - Echvi_0904 0.86 +0.6
1,031,512 - Echvi_0904 0.86 +2.0
1,031,550 - -0.7
1,031,632 + -0.7

Or see this region's nucleotide sequence