Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0520 and Echvi_0521 are separated by 83 nucleotides Echvi_0521 and Echvi_0522 are separated by 12 nucleotides Echvi_0522 and Echvi_0523 are separated by 11 nucleotides
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Echvi_0521: Echvi_0521 - hypothetical protein, at 586,054 to 586,737
_0521
Echvi_0522: Echvi_0522 - SusD family., at 586,750 to 588,612
_0522
Echvi_0523: Echvi_0523 - TonB-linked outer membrane protein, SusC/RagA family, at 588,624 to 591,827
_0523
Position (kb) 586
587
588
589 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand at 586.024 kb on + strand at 586.024 kb on + strand at 586.025 kb on - strand at 586.045 kb on - strand at 586.055 kb on + strand at 586.086 kb on - strand at 586.120 kb on + strand at 586.120 kb on + strand at 586.132 kb on + strand, within Echvi_0521 at 586.133 kb on - strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.269 kb on - strand, within Echvi_0521 at 586.335 kb on + strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.355 kb on + strand, within Echvi_0521 at 586.360 kb on - strand, within Echvi_0521 at 586.379 kb on + strand, within Echvi_0521 at 586.484 kb on + strand, within Echvi_0521 at 586.623 kb on - strand, within Echvi_0521 at 586.665 kb on + strand, within Echvi_0521 at 586.670 kb on + strand at 586.690 kb on - strand at 586.725 kb on + strand at 586.730 kb on - strand at 586.730 kb on - strand at 586.737 kb on + strand at 586.795 kb on - strand at 586.814 kb on + strand at 586.814 kb on + strand at 586.817 kb on + strand at 586.817 kb on + strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.885 kb on - strand at 586.885 kb on - strand at 586.919 kb on + strand at 586.920 kb on - strand at 586.933 kb on - strand at 586.934 kb on + strand at 586.941 kb on + strand, within Echvi_0522 at 586.941 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.963 kb on - strand, within Echvi_0522 at 586.984 kb on + strand, within Echvi_0522 at 587.000 kb on + strand, within Echvi_0522 at 587.001 kb on - strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.062 kb on + strand, within Echvi_0522 at 587.073 kb on + strand, within Echvi_0522 at 587.115 kb on + strand, within Echvi_0522 at 587.212 kb on + strand, within Echvi_0522 at 587.213 kb on - strand, within Echvi_0522 at 587.213 kb on - strand, within Echvi_0522 at 587.221 kb on - strand, within Echvi_0522 at 587.226 kb on + strand, within Echvi_0522 at 587.257 kb on + strand, within Echvi_0522 at 587.258 kb on - strand, within Echvi_0522 at 587.261 kb on + strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.262 kb on - strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.265 kb on + strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.266 kb on - strand, within Echvi_0522 at 587.274 kb on - strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.286 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.290 kb on + strand, within Echvi_0522 at 587.291 kb on - strand, within Echvi_0522 at 587.329 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.391 kb on + strand, within Echvi_0522 at 587.396 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.437 kb on + strand, within Echvi_0522 at 587.472 kb on + strand, within Echvi_0522 at 587.473 kb on - strand, within Echvi_0522 at 587.478 kb on + strand, within Echvi_0522 at 587.483 kb on + strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.484 kb on - strand, within Echvi_0522 at 587.485 kb on + strand, within Echvi_0522 at 587.485 kb on + strand, within Echvi_0522 at 587.532 kb on - strand, within Echvi_0522 at 587.532 kb on - strand, within Echvi_0522 at 587.580 kb on + strand, within Echvi_0522 at 587.591 kb on + strand, within Echvi_0522 at 587.592 kb on - strand, within Echvi_0522 at 587.597 kb on + strand, within Echvi_0522 at 587.674 kb on - strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.678 kb on + strand, within Echvi_0522 at 587.679 kb on - strand, within Echvi_0522 at 587.679 kb on - strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.799 kb on + strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.800 kb on - strand, within Echvi_0522 at 587.801 kb on + strand, within Echvi_0522 at 587.801 kb on + strand, within Echvi_0522 at 587.802 kb on - strand, within Echvi_0522 at 587.802 kb on - strand, within Echvi_0522 at 587.804 kb on - strand, within Echvi_0522 at 587.804 kb on - strand, within Echvi_0522 at 587.931 kb on + strand, within Echvi_0522 at 587.937 kb on - strand, within Echvi_0522 at 588.033 kb on + strand, within Echvi_0522 at 588.061 kb on + strand, within Echvi_0522 at 588.061 kb on + strand, within Echvi_0522 at 588.071 kb on + strand, within Echvi_0522 at 588.072 kb on - strand, within Echvi_0522 at 588.088 kb on - strand, within Echvi_0522 at 588.107 kb on + strand, within Echvi_0522 at 588.108 kb on - strand, within Echvi_0522 at 588.111 kb on + strand, within Echvi_0522 at 588.111 kb on + strand, within Echvi_0522 at 588.222 kb on + strand, within Echvi_0522 at 588.265 kb on + strand, within Echvi_0522 at 588.266 kb on - strand, within Echvi_0522 at 588.303 kb on + strand, within Echvi_0522 at 588.303 kb on + strand, within Echvi_0522 at 588.304 kb on - strand, within Echvi_0522 at 588.304 kb on - strand, within Echvi_0522 at 588.306 kb on - strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.335 kb on + strand, within Echvi_0522 at 588.336 kb on - strand, within Echvi_0522 at 588.356 kb on + strand, within Echvi_0522 at 588.369 kb on + strand, within Echvi_0522 at 588.369 kb on + strand, within Echvi_0522 at 588.371 kb on + strand, within Echvi_0522 at 588.466 kb on + strand at 588.466 kb on + strand at 588.496 kb on + strand at 588.496 kb on + strand at 588.497 kb on - strand at 588.511 kb on + strand at 588.514 kb on + strand at 588.514 kb on + strand at 588.514 kb on + strand at 588.515 kb on - strand at 588.516 kb on + strand at 588.517 kb on - strand at 588.578 kb on - strand at 588.604 kb on + strand at 588.638 kb on + strand at 588.638 kb on + strand at 588.639 kb on - strand at 588.639 kb on - strand at 588.765 kb on + strand at 588.837 kb on + strand at 588.842 kb on - strand at 588.913 kb on + strand at 588.913 kb on + strand at 588.917 kb on + strand at 588.918 kb on - strand at 588.948 kb on + strand, within Echvi_0523 at 588.948 kb on + strand, within Echvi_0523 at 588.949 kb on - strand, within Echvi_0523 at 588.980 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.049 kb on + strand, within Echvi_0523 at 589.090 kb on + strand, within Echvi_0523 at 589.091 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.095 kb on - strand, within Echvi_0523 at 589.107 kb on + strand, within Echvi_0523 at 589.108 kb on - strand at 589.123 kb on + strand, within Echvi_0523 at 589.123 kb on + strand, within Echvi_0523 at 589.124 kb on - strand, within Echvi_0523 at 589.258 kb on + strand, within Echvi_0523 at 589.258 kb on + strand, within Echvi_0523 at 589.301 kb on + strand, within Echvi_0523 at 589.303 kb on + strand, within Echvi_0523 at 589.393 kb on - strand, within Echvi_0523 at 589.457 kb on + strand, within Echvi_0523 at 589.457 kb on + strand, within Echvi_0523 at 589.460 kb on - strand, within Echvi_0523 at 589.469 kb on + strand, within Echvi_0523 at 589.469 kb on + strand, within Echvi_0523 at 589.485 kb on - strand, within Echvi_0523 at 589.488 kb on + strand, within Echvi_0523 at 589.527 kb on + strand, within Echvi_0523 at 589.527 kb on + strand, within Echvi_0523 at 589.552 kb on + strand, within Echvi_0523 at 589.553 kb on - strand, within Echvi_0523
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 585,858 + Echvi_0520 0.89 -0.4 585,858 + Echvi_0520 0.89 +0.3 585,861 + Echvi_0520 0.89 -0.1 585,861 + Echvi_0520 0.89 +0.2 585,861 + Echvi_0520 0.89 +0.0 585,862 - Echvi_0520 0.89 +3.0 585,862 - Echvi_0520 0.89 -0.7 585,952 + +1.3 586,024 + +0.9 586,024 + +1.9 586,025 - -2.0 586,045 - +0.6 586,055 + +0.1 586,086 - +1.0 586,120 + +0.2 586,120 + -0.6 586,132 + Echvi_0521 0.11 +0.5 586,133 - Echvi_0521 0.12 +0.1 586,150 + Echvi_0521 0.14 -0.0 586,150 + Echvi_0521 0.14 -0.3 586,150 + Echvi_0521 0.14 +0.5 586,268 + Echvi_0521 0.31 -1.5 586,268 + Echvi_0521 0.31 +0.4 586,269 - Echvi_0521 0.31 +0.6 586,335 + Echvi_0521 0.41 +0.3 586,336 - Echvi_0521 0.41 +1.7 586,336 - Echvi_0521 0.41 +0.8 586,338 + Echvi_0521 0.42 +0.7 586,338 + Echvi_0521 0.42 +0.9 586,338 + Echvi_0521 0.42 +1.1 586,338 + Echvi_0521 0.42 +1.0 586,339 - Echvi_0521 0.42 +1.8 586,339 - Echvi_0521 0.42 +1.3 586,355 + Echvi_0521 0.44 +0.4 586,360 - Echvi_0521 0.45 -1.1 586,379 + Echvi_0521 0.48 +0.2 586,484 + Echvi_0521 0.63 -0.4 586,623 - Echvi_0521 0.83 +0.7 586,665 + Echvi_0521 0.89 +0.3 586,670 + +0.3 586,690 - -0.4 586,725 + +1.2 586,730 - +1.5 586,730 - +1.0 586,737 + -0.1 586,795 - +0.1 586,814 + +0.8 586,814 + +0.2 586,817 + +0.4 586,817 + +2.6 586,818 - +0.5 586,818 - +0.8 586,818 - +0.4 586,818 - +0.6 586,880 + +0.6 586,881 - +1.4 586,881 - +2.9 586,881 - +1.9 586,884 + +0.3 586,884 + +0.7 586,884 + +1.4 586,884 + +0.3 586,885 - +0.2 586,885 - +1.9 586,919 + -0.3 586,920 - -0.3 586,933 - -0.7 586,934 + +0.3 586,941 + Echvi_0522 0.10 -0.4 586,941 + Echvi_0522 0.10 +0.5 586,962 + Echvi_0522 0.11 -0.9 586,962 + Echvi_0522 0.11 -0.8 586,962 + Echvi_0522 0.11 +1.1 586,963 - Echvi_0522 0.11 +0.4 586,984 + Echvi_0522 0.13 +0.4 587,000 + Echvi_0522 0.13 +0.5 587,001 - Echvi_0522 0.13 -0.1 587,062 + Echvi_0522 0.17 +1.1 587,062 + Echvi_0522 0.17 -1.5 587,062 + Echvi_0522 0.17 -0.2 587,073 + Echvi_0522 0.17 -1.3 587,115 + Echvi_0522 0.20 +0.3 587,212 + Echvi_0522 0.25 -2.0 587,213 - Echvi_0522 0.25 +1.5 587,213 - Echvi_0522 0.25 +1.5 587,221 - Echvi_0522 0.25 +1.2 587,226 + Echvi_0522 0.26 +0.3 587,257 + Echvi_0522 0.27 -0.3 587,258 - Echvi_0522 0.27 +0.0 587,261 + Echvi_0522 0.27 +0.4 587,262 - Echvi_0522 0.27 +0.3 587,262 - Echvi_0522 0.27 +0.9 587,262 - Echvi_0522 0.27 -2.0 587,265 + Echvi_0522 0.28 +0.3 587,265 + Echvi_0522 0.28 +0.9 587,265 + Echvi_0522 0.28 -0.4 587,266 - Echvi_0522 0.28 +0.9 587,266 - Echvi_0522 0.28 +0.4 587,266 - Echvi_0522 0.28 +2.2 587,274 - Echvi_0522 0.28 +0.5 587,286 + Echvi_0522 0.29 +1.7 587,286 + Echvi_0522 0.29 +0.0 587,286 + Echvi_0522 0.29 +1.0 587,290 + Echvi_0522 0.29 -0.4 587,290 + Echvi_0522 0.29 -0.5 587,290 + Echvi_0522 0.29 +1.1 587,290 + Echvi_0522 0.29 +0.3 587,290 + Echvi_0522 0.29 +1.2 587,291 - Echvi_0522 0.29 +0.7 587,329 + Echvi_0522 0.31 +0.2 587,391 + Echvi_0522 0.34 +0.2 587,391 + Echvi_0522 0.34 -0.2 587,391 + Echvi_0522 0.34 -1.4 587,391 + Echvi_0522 0.34 +1.7 587,391 + Echvi_0522 0.34 -0.8 587,396 + Echvi_0522 0.35 +0.9 587,437 + Echvi_0522 0.37 -0.6 587,437 + Echvi_0522 0.37 +0.7 587,437 + Echvi_0522 0.37 +0.3 587,472 + Echvi_0522 0.39 +1.1 587,473 - Echvi_0522 0.39 +0.9 587,478 + Echvi_0522 0.39 +0.5 587,483 + Echvi_0522 0.39 +1.1 587,484 - Echvi_0522 0.39 +2.4 587,484 - Echvi_0522 0.39 +0.9 587,484 - Echvi_0522 0.39 +0.4 587,484 - Echvi_0522 0.39 +1.9 587,485 + Echvi_0522 0.39 +0.4 587,485 + Echvi_0522 0.39 -2.6 587,532 - Echvi_0522 0.42 +0.5 587,532 - Echvi_0522 0.42 +1.4 587,580 + Echvi_0522 0.45 +0.6 587,591 + Echvi_0522 0.45 +1.6 587,592 - Echvi_0522 0.45 +1.1 587,597 + Echvi_0522 0.45 -0.7 587,674 - Echvi_0522 0.50 -0.7 587,678 + Echvi_0522 0.50 -1.2 587,678 + Echvi_0522 0.50 +0.3 587,678 + Echvi_0522 0.50 +0.4 587,679 - Echvi_0522 0.50 +1.5 587,679 - Echvi_0522 0.50 +0.7 587,799 + Echvi_0522 0.56 +1.0 587,799 + Echvi_0522 0.56 +0.5 587,799 + Echvi_0522 0.56 +0.2 587,800 - Echvi_0522 0.56 +0.9 587,800 - Echvi_0522 0.56 +1.3 587,800 - Echvi_0522 0.56 +1.6 587,801 + Echvi_0522 0.56 +1.9 587,801 + Echvi_0522 0.56 -1.8 587,802 - Echvi_0522 0.56 +0.9 587,802 - Echvi_0522 0.56 +1.1 587,804 - Echvi_0522 0.57 -1.8 587,804 - Echvi_0522 0.57 -1.6 587,931 + Echvi_0522 0.63 +0.9 587,937 - Echvi_0522 0.64 +1.6 588,033 + Echvi_0522 0.69 +0.7 588,061 + Echvi_0522 0.70 +1.2 588,061 + Echvi_0522 0.70 +0.3 588,071 + Echvi_0522 0.71 +0.5 588,072 - Echvi_0522 0.71 +1.5 588,088 - Echvi_0522 0.72 +1.2 588,107 + Echvi_0522 0.73 -0.9 588,108 - Echvi_0522 0.73 +0.2 588,111 + Echvi_0522 0.73 +1.3 588,111 + Echvi_0522 0.73 +0.5 588,222 + Echvi_0522 0.79 -0.8 588,265 + Echvi_0522 0.81 -0.2 588,266 - Echvi_0522 0.81 +1.1 588,303 + Echvi_0522 0.83 +1.0 588,303 + Echvi_0522 0.83 +0.4 588,304 - Echvi_0522 0.83 -0.3 588,304 - Echvi_0522 0.83 +0.6 588,306 - Echvi_0522 0.84 -0.1 588,335 + Echvi_0522 0.85 +0.3 588,335 + Echvi_0522 0.85 -1.5 588,335 + Echvi_0522 0.85 -0.7 588,336 - Echvi_0522 0.85 -0.0 588,356 + Echvi_0522 0.86 +0.9 588,369 + Echvi_0522 0.87 +2.0 588,369 + Echvi_0522 0.87 +3.6 588,371 + Echvi_0522 0.87 -1.9 588,466 + -0.8 588,466 + -0.7 588,496 + +0.4 588,496 + +0.5 588,497 - +0.1 588,511 + +0.4 588,514 + +0.8 588,514 + +1.9 588,514 + +0.3 588,515 - +3.9 588,516 + -0.2 588,517 - +1.9 588,578 - +1.2 588,604 + +0.6 588,638 + +2.2 588,638 + -0.2 588,639 - +0.9 588,639 - -0.4 588,765 + +1.2 588,837 + -1.1 588,842 - +0.9 588,913 + +0.0 588,913 + +2.9 588,917 + -1.4 588,918 - -1.4 588,948 + Echvi_0523 0.10 +1.6 588,948 + Echvi_0523 0.10 +0.5 588,949 - Echvi_0523 0.10 +0.8 588,980 + Echvi_0523 0.11 +1.2 589,049 + Echvi_0523 0.13 +0.4 589,049 + Echvi_0523 0.13 +1.0 589,049 + Echvi_0523 0.13 +0.6 589,090 + Echvi_0523 0.15 -0.2 589,091 - Echvi_0523 0.15 +1.5 589,095 - Echvi_0523 0.15 +0.6 589,095 - Echvi_0523 0.15 +1.0 589,095 - Echvi_0523 0.15 +1.9 589,107 + Echvi_0523 0.15 +0.3 589,108 - +0.9 589,123 + Echvi_0523 0.16 +1.2 589,123 + Echvi_0523 0.16 +1.2 589,124 - Echvi_0523 0.16 +0.9 589,258 + Echvi_0523 0.20 +0.3 589,258 + Echvi_0523 0.20 +0.8 589,301 + Echvi_0523 0.21 +1.6 589,303 + Echvi_0523 0.21 +1.5 589,393 - Echvi_0523 0.24 -1.0 589,457 + Echvi_0523 0.26 -0.3 589,457 + Echvi_0523 0.26 +1.2 589,460 - Echvi_0523 0.26 +0.5 589,469 + Echvi_0523 0.26 +0.5 589,469 + Echvi_0523 0.26 -0.3 589,485 - Echvi_0523 0.27 +0.2 589,488 + Echvi_0523 0.27 +1.1 589,527 + Echvi_0523 0.28 -0.2 589,527 + Echvi_0523 0.28 +0.0 589,552 + Echvi_0523 0.29 +0.3 589,553 - Echvi_0523 0.29 +1.4
Or see this region's nucleotide sequence