Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0521

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0520 and Echvi_0521 are separated by 83 nucleotidesEchvi_0521 and Echvi_0522 are separated by 12 nucleotides Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970 _0520 Echvi_0521: Echvi_0521 - hypothetical protein, at 586,054 to 586,737 _0521 Echvi_0522: Echvi_0522 - SusD family., at 586,750 to 588,612 _0522 Position (kb) 586 587Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 585.078 kb on + strandat 585.078 kb on + strandat 585.117 kb on + strand, within Echvi_0520at 585.127 kb on + strand, within Echvi_0520at 585.127 kb on + strand, within Echvi_0520at 585.172 kb on + strand, within Echvi_0520at 585.173 kb on - strand, within Echvi_0520at 585.186 kb on + strand, within Echvi_0520at 585.186 kb on + strand, within Echvi_0520at 585.187 kb on - strand, within Echvi_0520at 585.187 kb on - strand, within Echvi_0520at 585.190 kb on + strand, within Echvi_0520at 585.190 kb on + strand, within Echvi_0520at 585.190 kb on + strand, within Echvi_0520at 585.190 kb on + strand, within Echvi_0520at 585.191 kb on - strand, within Echvi_0520at 585.209 kb on + strand, within Echvi_0520at 585.233 kb on - strand, within Echvi_0520at 585.253 kb on + strand, within Echvi_0520at 585.254 kb on - strand, within Echvi_0520at 585.256 kb on - strand, within Echvi_0520at 585.306 kb on + strand, within Echvi_0520at 585.306 kb on + strand, within Echvi_0520at 585.306 kb on + strand, within Echvi_0520at 585.306 kb on + strand, within Echvi_0520at 585.307 kb on - strand, within Echvi_0520at 585.403 kb on + strand, within Echvi_0520at 585.403 kb on + strand, within Echvi_0520at 585.404 kb on - strand, within Echvi_0520at 585.405 kb on + strand, within Echvi_0520at 585.439 kb on + strand, within Echvi_0520at 585.524 kb on - strand, within Echvi_0520at 585.610 kb on + strand, within Echvi_0520at 585.678 kb on + strand, within Echvi_0520at 585.679 kb on - strand, within Echvi_0520at 585.679 kb on - strand, within Echvi_0520at 585.679 kb on - strand, within Echvi_0520at 585.687 kb on + strand, within Echvi_0520at 585.691 kb on - strand, within Echvi_0520at 585.858 kb on + strand, within Echvi_0520at 585.858 kb on + strand, within Echvi_0520at 585.861 kb on + strand, within Echvi_0520at 585.861 kb on + strand, within Echvi_0520at 585.861 kb on + strand, within Echvi_0520at 585.862 kb on - strand, within Echvi_0520at 585.862 kb on - strand, within Echvi_0520at 585.952 kb on + strandat 586.024 kb on + strandat 586.024 kb on + strandat 586.025 kb on - strandat 586.045 kb on - strandat 586.055 kb on + strandat 586.086 kb on - strandat 586.120 kb on + strandat 586.120 kb on + strandat 586.132 kb on + strand, within Echvi_0521at 586.133 kb on - strand, within Echvi_0521at 586.150 kb on + strand, within Echvi_0521at 586.150 kb on + strand, within Echvi_0521at 586.150 kb on + strand, within Echvi_0521at 586.268 kb on + strand, within Echvi_0521at 586.268 kb on + strand, within Echvi_0521at 586.269 kb on - strand, within Echvi_0521at 586.335 kb on + strand, within Echvi_0521at 586.336 kb on - strand, within Echvi_0521at 586.336 kb on - strand, within Echvi_0521at 586.338 kb on + strand, within Echvi_0521at 586.338 kb on + strand, within Echvi_0521at 586.338 kb on + strand, within Echvi_0521at 586.338 kb on + strand, within Echvi_0521at 586.339 kb on - strand, within Echvi_0521at 586.339 kb on - strand, within Echvi_0521at 586.355 kb on + strand, within Echvi_0521at 586.360 kb on - strand, within Echvi_0521at 586.379 kb on + strand, within Echvi_0521at 586.484 kb on + strand, within Echvi_0521at 586.623 kb on - strand, within Echvi_0521at 586.665 kb on + strand, within Echvi_0521at 586.670 kb on + strandat 586.690 kb on - strandat 586.725 kb on + strandat 586.730 kb on - strandat 586.730 kb on - strandat 586.737 kb on + strandat 586.795 kb on - strandat 586.814 kb on + strandat 586.814 kb on + strandat 586.817 kb on + strandat 586.817 kb on + strandat 586.818 kb on - strandat 586.818 kb on - strandat 586.818 kb on - strandat 586.818 kb on - strandat 586.880 kb on + strandat 586.881 kb on - strandat 586.881 kb on - strandat 586.881 kb on - strandat 586.884 kb on + strandat 586.884 kb on + strandat 586.884 kb on + strandat 586.884 kb on + strandat 586.885 kb on - strandat 586.885 kb on - strandat 586.919 kb on + strandat 586.920 kb on - strandat 586.933 kb on - strandat 586.934 kb on + strandat 586.941 kb on + strand, within Echvi_0522at 586.941 kb on + strand, within Echvi_0522at 586.962 kb on + strand, within Echvi_0522at 586.962 kb on + strand, within Echvi_0522at 586.962 kb on + strand, within Echvi_0522at 586.963 kb on - strand, within Echvi_0522at 586.984 kb on + strand, within Echvi_0522at 587.000 kb on + strand, within Echvi_0522at 587.001 kb on - strand, within Echvi_0522at 587.062 kb on + strand, within Echvi_0522at 587.062 kb on + strand, within Echvi_0522at 587.062 kb on + strand, within Echvi_0522at 587.073 kb on + strand, within Echvi_0522at 587.115 kb on + strand, within Echvi_0522at 587.212 kb on + strand, within Echvi_0522at 587.213 kb on - strand, within Echvi_0522at 587.213 kb on - strand, within Echvi_0522at 587.221 kb on - strand, within Echvi_0522at 587.226 kb on + strand, within Echvi_0522at 587.257 kb on + strand, within Echvi_0522at 587.258 kb on - strand, within Echvi_0522at 587.261 kb on + strand, within Echvi_0522at 587.262 kb on - strand, within Echvi_0522at 587.262 kb on - strand, within Echvi_0522at 587.262 kb on - strand, within Echvi_0522at 587.265 kb on + strand, within Echvi_0522at 587.265 kb on + strand, within Echvi_0522at 587.265 kb on + strand, within Echvi_0522at 587.266 kb on - strand, within Echvi_0522at 587.266 kb on - strand, within Echvi_0522at 587.266 kb on - strand, within Echvi_0522at 587.274 kb on - strand, within Echvi_0522at 587.286 kb on + strand, within Echvi_0522at 587.286 kb on + strand, within Echvi_0522at 587.286 kb on + strand, within Echvi_0522at 587.290 kb on + strand, within Echvi_0522at 587.290 kb on + strand, within Echvi_0522at 587.290 kb on + strand, within Echvi_0522at 587.290 kb on + strand, within Echvi_0522at 587.290 kb on + strand, within Echvi_0522at 587.291 kb on - strand, within Echvi_0522at 587.329 kb on + strand, within Echvi_0522at 587.391 kb on + strand, within Echvi_0522at 587.391 kb on + strand, within Echvi_0522at 587.391 kb on + strand, within Echvi_0522at 587.391 kb on + strand, within Echvi_0522at 587.391 kb on + strand, within Echvi_0522at 587.396 kb on + strand, within Echvi_0522at 587.437 kb on + strand, within Echvi_0522at 587.437 kb on + strand, within Echvi_0522at 587.437 kb on + strand, within Echvi_0522at 587.472 kb on + strand, within Echvi_0522at 587.473 kb on - strand, within Echvi_0522at 587.478 kb on + strand, within Echvi_0522at 587.483 kb on + strand, within Echvi_0522at 587.484 kb on - strand, within Echvi_0522at 587.484 kb on - strand, within Echvi_0522at 587.484 kb on - strand, within Echvi_0522at 587.484 kb on - strand, within Echvi_0522at 587.485 kb on + strand, within Echvi_0522at 587.485 kb on + strand, within Echvi_0522at 587.532 kb on - strand, within Echvi_0522at 587.532 kb on - strand, within Echvi_0522at 587.580 kb on + strand, within Echvi_0522at 587.591 kb on + strand, within Echvi_0522at 587.592 kb on - strand, within Echvi_0522at 587.597 kb on + strand, within Echvi_0522at 587.674 kb on - strand, within Echvi_0522at 587.678 kb on + strand, within Echvi_0522at 587.678 kb on + strand, within Echvi_0522at 587.678 kb on + strand, within Echvi_0522at 587.679 kb on - strand, within Echvi_0522at 587.679 kb on - strand, within Echvi_0522

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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585,078 + +0.1
585,078 + +1.3
585,117 + Echvi_0520 0.13 -0.2
585,127 + Echvi_0520 0.14 -0.1
585,127 + Echvi_0520 0.14 +0.2
585,172 + Echvi_0520 0.19 +0.5
585,173 - Echvi_0520 0.19 +0.9
585,186 + Echvi_0520 0.20 -0.3
585,186 + Echvi_0520 0.20 +0.3
585,187 - Echvi_0520 0.20 +0.9
585,187 - Echvi_0520 0.20 -0.7
585,190 + Echvi_0520 0.21 +0.5
585,190 + Echvi_0520 0.21 -0.5
585,190 + Echvi_0520 0.21 +0.1
585,190 + Echvi_0520 0.21 -0.9
585,191 - Echvi_0520 0.21 +0.4
585,209 + Echvi_0520 0.23 -0.8
585,233 - Echvi_0520 0.25 +0.9
585,253 + Echvi_0520 0.27 +1.1
585,254 - Echvi_0520 0.27 +1.3
585,256 - Echvi_0520 0.27 -0.9
585,306 + Echvi_0520 0.32 -3.4
585,306 + Echvi_0520 0.32 -1.3
585,306 + Echvi_0520 0.32 -1.3
585,306 + Echvi_0520 0.32 +0.1
585,307 - Echvi_0520 0.33 -0.1
585,403 + Echvi_0520 0.42 -0.2
585,403 + Echvi_0520 0.42 -0.3
585,404 - Echvi_0520 0.42 +1.2
585,405 + Echvi_0520 0.42 -0.5
585,439 + Echvi_0520 0.46 +0.1
585,524 - Echvi_0520 0.55 -0.1
585,610 + Echvi_0520 0.63 -0.6
585,678 + Echvi_0520 0.70 -0.1
585,679 - Echvi_0520 0.70 +0.6
585,679 - Echvi_0520 0.70 -0.1
585,679 - Echvi_0520 0.70 +0.6
585,687 + Echvi_0520 0.71 +0.4
585,691 - Echvi_0520 0.72 +0.7
585,858 + Echvi_0520 0.89 -0.4
585,858 + Echvi_0520 0.89 +0.3
585,861 + Echvi_0520 0.89 -0.1
585,861 + Echvi_0520 0.89 +0.2
585,861 + Echvi_0520 0.89 +0.0
585,862 - Echvi_0520 0.89 +3.0
585,862 - Echvi_0520 0.89 -0.7
585,952 + +1.3
586,024 + +0.9
586,024 + +1.9
586,025 - -2.0
586,045 - +0.6
586,055 + +0.1
586,086 - +1.0
586,120 + +0.2
586,120 + -0.6
586,132 + Echvi_0521 0.11 +0.5
586,133 - Echvi_0521 0.12 +0.1
586,150 + Echvi_0521 0.14 -0.0
586,150 + Echvi_0521 0.14 -0.3
586,150 + Echvi_0521 0.14 +0.5
586,268 + Echvi_0521 0.31 -1.5
586,268 + Echvi_0521 0.31 +0.4
586,269 - Echvi_0521 0.31 +0.6
586,335 + Echvi_0521 0.41 +0.3
586,336 - Echvi_0521 0.41 +1.7
586,336 - Echvi_0521 0.41 +0.8
586,338 + Echvi_0521 0.42 +0.7
586,338 + Echvi_0521 0.42 +0.9
586,338 + Echvi_0521 0.42 +1.1
586,338 + Echvi_0521 0.42 +1.0
586,339 - Echvi_0521 0.42 +1.8
586,339 - Echvi_0521 0.42 +1.3
586,355 + Echvi_0521 0.44 +0.4
586,360 - Echvi_0521 0.45 -1.1
586,379 + Echvi_0521 0.48 +0.2
586,484 + Echvi_0521 0.63 -0.4
586,623 - Echvi_0521 0.83 +0.7
586,665 + Echvi_0521 0.89 +0.3
586,670 + +0.3
586,690 - -0.4
586,725 + +1.2
586,730 - +1.5
586,730 - +1.0
586,737 + -0.1
586,795 - +0.1
586,814 + +0.8
586,814 + +0.2
586,817 + +0.4
586,817 + +2.6
586,818 - +0.5
586,818 - +0.8
586,818 - +0.4
586,818 - +0.6
586,880 + +0.6
586,881 - +1.4
586,881 - +2.9
586,881 - +1.9
586,884 + +0.3
586,884 + +0.7
586,884 + +1.4
586,884 + +0.3
586,885 - +0.2
586,885 - +1.9
586,919 + -0.3
586,920 - -0.3
586,933 - -0.7
586,934 + +0.3
586,941 + Echvi_0522 0.10 -0.4
586,941 + Echvi_0522 0.10 +0.5
586,962 + Echvi_0522 0.11 -0.9
586,962 + Echvi_0522 0.11 -0.8
586,962 + Echvi_0522 0.11 +1.1
586,963 - Echvi_0522 0.11 +0.4
586,984 + Echvi_0522 0.13 +0.4
587,000 + Echvi_0522 0.13 +0.5
587,001 - Echvi_0522 0.13 -0.1
587,062 + Echvi_0522 0.17 +1.1
587,062 + Echvi_0522 0.17 -1.5
587,062 + Echvi_0522 0.17 -0.2
587,073 + Echvi_0522 0.17 -1.3
587,115 + Echvi_0522 0.20 +0.3
587,212 + Echvi_0522 0.25 -2.0
587,213 - Echvi_0522 0.25 +1.5
587,213 - Echvi_0522 0.25 +1.5
587,221 - Echvi_0522 0.25 +1.2
587,226 + Echvi_0522 0.26 +0.3
587,257 + Echvi_0522 0.27 -0.3
587,258 - Echvi_0522 0.27 +0.0
587,261 + Echvi_0522 0.27 +0.4
587,262 - Echvi_0522 0.27 +0.3
587,262 - Echvi_0522 0.27 +0.9
587,262 - Echvi_0522 0.27 -2.0
587,265 + Echvi_0522 0.28 +0.3
587,265 + Echvi_0522 0.28 +0.9
587,265 + Echvi_0522 0.28 -0.4
587,266 - Echvi_0522 0.28 +0.9
587,266 - Echvi_0522 0.28 +0.4
587,266 - Echvi_0522 0.28 +2.2
587,274 - Echvi_0522 0.28 +0.5
587,286 + Echvi_0522 0.29 +1.7
587,286 + Echvi_0522 0.29 +0.0
587,286 + Echvi_0522 0.29 +1.0
587,290 + Echvi_0522 0.29 -0.4
587,290 + Echvi_0522 0.29 -0.5
587,290 + Echvi_0522 0.29 +1.1
587,290 + Echvi_0522 0.29 +0.3
587,290 + Echvi_0522 0.29 +1.2
587,291 - Echvi_0522 0.29 +0.7
587,329 + Echvi_0522 0.31 +0.2
587,391 + Echvi_0522 0.34 +0.2
587,391 + Echvi_0522 0.34 -0.2
587,391 + Echvi_0522 0.34 -1.4
587,391 + Echvi_0522 0.34 +1.7
587,391 + Echvi_0522 0.34 -0.8
587,396 + Echvi_0522 0.35 +0.9
587,437 + Echvi_0522 0.37 -0.6
587,437 + Echvi_0522 0.37 +0.7
587,437 + Echvi_0522 0.37 +0.3
587,472 + Echvi_0522 0.39 +1.1
587,473 - Echvi_0522 0.39 +0.9
587,478 + Echvi_0522 0.39 +0.5
587,483 + Echvi_0522 0.39 +1.1
587,484 - Echvi_0522 0.39 +2.4
587,484 - Echvi_0522 0.39 +0.9
587,484 - Echvi_0522 0.39 +0.4
587,484 - Echvi_0522 0.39 +1.9
587,485 + Echvi_0522 0.39 +0.4
587,485 + Echvi_0522 0.39 -2.6
587,532 - Echvi_0522 0.42 +0.5
587,532 - Echvi_0522 0.42 +1.4
587,580 + Echvi_0522 0.45 +0.6
587,591 + Echvi_0522 0.45 +1.6
587,592 - Echvi_0522 0.45 +1.1
587,597 + Echvi_0522 0.45 -0.7
587,674 - Echvi_0522 0.50 -0.7
587,678 + Echvi_0522 0.50 -1.2
587,678 + Echvi_0522 0.50 +0.3
587,678 + Echvi_0522 0.50 +0.4
587,679 - Echvi_0522 0.50 +1.5
587,679 - Echvi_0522 0.50 +0.7

Or see this region's nucleotide sequence