Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0519 and Echvi_0520 are separated by 0 nucleotides Echvi_0520 and Echvi_0521 are separated by 83 nucleotides Echvi_0521 and Echvi_0522 are separated by 12 nucleotides
Echvi_0519: Echvi_0519 - Beta-xylosidase, at 583,499 to 584,986
_0519
Echvi_0520: Echvi_0520 - Beta-xylosidase, at 584,987 to 585,970
_0520
Echvi_0521: Echvi_0521 - hypothetical protein, at 586,054 to 586,737
_0521
Echvi_0522: Echvi_0522 - SusD family., at 586,750 to 588,612
_0522
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 583.991 kb on - strand, within Echvi_0519 at 584.138 kb on - strand, within Echvi_0519 at 584.140 kb on - strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.160 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.178 kb on + strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.179 kb on - strand, within Echvi_0519 at 584.325 kb on + strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand, within Echvi_0519 at 584.326 kb on - strand at 584.326 kb on - strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.327 kb on + strand, within Echvi_0519 at 584.328 kb on - strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.329 kb on + strand, within Echvi_0519 at 584.330 kb on - strand, within Echvi_0519 at 584.337 kb on + strand, within Echvi_0519 at 584.349 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.352 kb on + strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.353 kb on - strand, within Echvi_0519 at 584.378 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.422 kb on + strand, within Echvi_0519 at 584.483 kb on + strand, within Echvi_0519 at 584.484 kb on - strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.526 kb on + strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.527 kb on - strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.529 kb on + strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.530 kb on - strand, within Echvi_0519 at 584.536 kb on + strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.537 kb on - strand, within Echvi_0519 at 584.562 kb on + strand, within Echvi_0519 at 584.608 kb on + strand, within Echvi_0519 at 584.609 kb on - strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.640 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.704 kb on + strand, within Echvi_0519 at 584.721 kb on + strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.722 kb on - strand, within Echvi_0519 at 584.737 kb on + strand, within Echvi_0519 at 584.739 kb on + strand, within Echvi_0519 at 584.740 kb on - strand, within Echvi_0519 at 584.745 kb on + strand, within Echvi_0519 at 584.746 kb on - strand, within Echvi_0519 at 584.765 kb on + strand, within Echvi_0519 at 584.768 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.788 kb on + strand, within Echvi_0519 at 584.789 kb on - strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.790 kb on + strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.791 kb on - strand, within Echvi_0519 at 584.828 kb on - strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.835 kb on + strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.836 kb on - strand, within Echvi_0519 at 584.839 kb on + strand at 584.840 kb on - strand at 584.893 kb on + strand at 584.893 kb on + strand at 584.948 kb on + strand at 584.948 kb on + strand at 584.949 kb on - strand at 584.988 kb on + strand at 584.988 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.996 kb on + strand at 584.997 kb on - strand at 585.022 kb on + strand at 585.043 kb on + strand at 585.043 kb on + strand at 585.044 kb on - strand at 585.078 kb on + strand at 585.078 kb on + strand at 585.117 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.127 kb on + strand, within Echvi_0520 at 585.172 kb on + strand, within Echvi_0520 at 585.173 kb on - strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.186 kb on + strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.187 kb on - strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.190 kb on + strand, within Echvi_0520 at 585.191 kb on - strand, within Echvi_0520 at 585.209 kb on + strand, within Echvi_0520 at 585.233 kb on - strand, within Echvi_0520 at 585.253 kb on + strand, within Echvi_0520 at 585.254 kb on - strand, within Echvi_0520 at 585.256 kb on - strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.306 kb on + strand, within Echvi_0520 at 585.307 kb on - strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.403 kb on + strand, within Echvi_0520 at 585.404 kb on - strand, within Echvi_0520 at 585.405 kb on + strand, within Echvi_0520 at 585.439 kb on + strand, within Echvi_0520 at 585.524 kb on - strand, within Echvi_0520 at 585.610 kb on + strand, within Echvi_0520 at 585.678 kb on + strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.679 kb on - strand, within Echvi_0520 at 585.687 kb on + strand, within Echvi_0520 at 585.691 kb on - strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.858 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.861 kb on + strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.862 kb on - strand, within Echvi_0520 at 585.952 kb on + strand at 586.024 kb on + strand at 586.024 kb on + strand at 586.025 kb on - strand at 586.045 kb on - strand at 586.055 kb on + strand at 586.086 kb on - strand at 586.120 kb on + strand at 586.120 kb on + strand at 586.132 kb on + strand, within Echvi_0521 at 586.133 kb on - strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.150 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.268 kb on + strand, within Echvi_0521 at 586.269 kb on - strand, within Echvi_0521 at 586.335 kb on + strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.336 kb on - strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.338 kb on + strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.339 kb on - strand, within Echvi_0521 at 586.355 kb on + strand, within Echvi_0521 at 586.360 kb on - strand, within Echvi_0521 at 586.379 kb on + strand, within Echvi_0521 at 586.484 kb on + strand, within Echvi_0521 at 586.623 kb on - strand, within Echvi_0521 at 586.665 kb on + strand, within Echvi_0521 at 586.670 kb on + strand at 586.690 kb on - strand at 586.725 kb on + strand at 586.730 kb on - strand at 586.730 kb on - strand at 586.737 kb on + strand at 586.795 kb on - strand at 586.814 kb on + strand at 586.814 kb on + strand at 586.817 kb on + strand at 586.817 kb on + strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.818 kb on - strand at 586.880 kb on + strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.881 kb on - strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.884 kb on + strand at 586.885 kb on - strand at 586.885 kb on - strand at 586.919 kb on + strand at 586.920 kb on - strand at 586.933 kb on - strand at 586.934 kb on + strand at 586.941 kb on + strand, within Echvi_0522 at 586.941 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.962 kb on + strand, within Echvi_0522 at 586.963 kb on - strand, within Echvi_0522
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 583,991 - Echvi_0519 0.33 +0.1 584,138 - Echvi_0519 0.43 +1.9 584,140 - Echvi_0519 0.43 -0.9 584,160 + Echvi_0519 0.44 +0.4 584,160 + Echvi_0519 0.44 -0.1 584,178 + Echvi_0519 0.46 +1.1 584,178 + Echvi_0519 0.46 -0.3 584,178 + Echvi_0519 0.46 -0.1 584,178 + Echvi_0519 0.46 +0.4 584,178 + Echvi_0519 0.46 -0.9 584,179 - Echvi_0519 0.46 +0.9 584,179 - Echvi_0519 0.46 -1.3 584,325 + Echvi_0519 0.56 +1.3 584,326 - Echvi_0519 0.56 -0.4 584,326 - Echvi_0519 0.56 -2.4 584,326 - Echvi_0519 0.56 -0.3 584,326 - +1.9 584,326 - Echvi_0519 0.56 +2.6 584,327 + Echvi_0519 0.56 +0.0 584,327 + Echvi_0519 0.56 +0.4 584,327 + Echvi_0519 0.56 +0.2 584,327 + Echvi_0519 0.56 -0.1 584,327 + Echvi_0519 0.56 -0.4 584,328 - Echvi_0519 0.56 +0.0 584,329 + Echvi_0519 0.56 +0.1 584,329 + Echvi_0519 0.56 +0.4 584,329 + Echvi_0519 0.56 -2.1 584,330 - Echvi_0519 0.56 +1.1 584,337 + Echvi_0519 0.56 -0.1 584,349 + Echvi_0519 0.57 -0.7 584,352 + Echvi_0519 0.57 -0.0 584,352 + Echvi_0519 0.57 +0.2 584,352 + Echvi_0519 0.57 -1.3 584,353 - Echvi_0519 0.57 +0.6 584,353 - Echvi_0519 0.57 +1.1 584,353 - Echvi_0519 0.57 -0.3 584,378 + Echvi_0519 0.59 -0.4 584,422 + Echvi_0519 0.62 -1.0 584,422 + Echvi_0519 0.62 +0.3 584,483 + Echvi_0519 0.66 +0.7 584,484 - Echvi_0519 0.66 -0.1 584,526 + Echvi_0519 0.69 -1.1 584,526 + Echvi_0519 0.69 -0.4 584,526 + Echvi_0519 0.69 -1.8 584,526 + Echvi_0519 0.69 +0.3 584,526 + Echvi_0519 0.69 +0.2 584,527 - Echvi_0519 0.69 +1.5 584,527 - Echvi_0519 0.69 +2.6 584,527 - Echvi_0519 0.69 -1.4 584,529 + Echvi_0519 0.69 +0.6 584,529 + Echvi_0519 0.69 +0.1 584,529 + Echvi_0519 0.69 -0.8 584,530 - Echvi_0519 0.69 -0.6 584,530 - Echvi_0519 0.69 +0.6 584,536 + Echvi_0519 0.70 +0.2 584,537 - Echvi_0519 0.70 -1.2 584,537 - Echvi_0519 0.70 -1.6 584,562 + Echvi_0519 0.71 -0.4 584,608 + Echvi_0519 0.75 -0.9 584,609 - Echvi_0519 0.75 -1.9 584,640 + Echvi_0519 0.77 -1.1 584,640 + Echvi_0519 0.77 +0.6 584,704 + Echvi_0519 0.81 -0.3 584,704 + Echvi_0519 0.81 -0.9 584,721 + Echvi_0519 0.82 -0.6 584,722 - Echvi_0519 0.82 +1.9 584,722 - Echvi_0519 0.82 +1.6 584,737 + Echvi_0519 0.83 -1.6 584,739 + Echvi_0519 0.83 +1.2 584,740 - Echvi_0519 0.83 -1.3 584,745 + Echvi_0519 0.84 -0.2 584,746 - Echvi_0519 0.84 +0.9 584,765 + Echvi_0519 0.85 -0.7 584,768 + Echvi_0519 0.85 -0.7 584,788 + Echvi_0519 0.87 +0.5 584,788 + Echvi_0519 0.87 -1.1 584,789 - Echvi_0519 0.87 -0.3 584,790 + Echvi_0519 0.87 -0.3 584,790 + Echvi_0519 0.87 +0.8 584,791 - Echvi_0519 0.87 -2.5 584,791 - Echvi_0519 0.87 -0.1 584,828 - Echvi_0519 0.89 -0.8 584,835 + Echvi_0519 0.90 +0.1 584,835 + Echvi_0519 0.90 +0.3 584,836 - Echvi_0519 0.90 -0.4 584,836 - Echvi_0519 0.90 +0.6 584,836 - Echvi_0519 0.90 -0.2 584,839 + +0.1 584,840 - +0.6 584,893 + -0.7 584,893 + +0.5 584,948 + -0.7 584,948 + +0.5 584,949 - +0.9 584,988 + +0.3 584,988 + -0.2 584,996 + +0.1 584,996 + +1.1 584,996 + -0.4 584,996 + +1.9 584,997 - -0.6 585,022 + +0.9 585,043 + +0.1 585,043 + +1.5 585,044 - -1.2 585,078 + +0.1 585,078 + +1.3 585,117 + Echvi_0520 0.13 -0.2 585,127 + Echvi_0520 0.14 -0.1 585,127 + Echvi_0520 0.14 +0.2 585,172 + Echvi_0520 0.19 +0.5 585,173 - Echvi_0520 0.19 +0.9 585,186 + Echvi_0520 0.20 -0.3 585,186 + Echvi_0520 0.20 +0.3 585,187 - Echvi_0520 0.20 +0.9 585,187 - Echvi_0520 0.20 -0.7 585,190 + Echvi_0520 0.21 +0.5 585,190 + Echvi_0520 0.21 -0.5 585,190 + Echvi_0520 0.21 +0.1 585,190 + Echvi_0520 0.21 -0.9 585,191 - Echvi_0520 0.21 +0.4 585,209 + Echvi_0520 0.23 -0.8 585,233 - Echvi_0520 0.25 +0.9 585,253 + Echvi_0520 0.27 +1.1 585,254 - Echvi_0520 0.27 +1.3 585,256 - Echvi_0520 0.27 -0.9 585,306 + Echvi_0520 0.32 -3.4 585,306 + Echvi_0520 0.32 -1.3 585,306 + Echvi_0520 0.32 -1.3 585,306 + Echvi_0520 0.32 +0.1 585,307 - Echvi_0520 0.33 -0.1 585,403 + Echvi_0520 0.42 -0.2 585,403 + Echvi_0520 0.42 -0.3 585,404 - Echvi_0520 0.42 +1.2 585,405 + Echvi_0520 0.42 -0.5 585,439 + Echvi_0520 0.46 +0.1 585,524 - Echvi_0520 0.55 -0.1 585,610 + Echvi_0520 0.63 -0.6 585,678 + Echvi_0520 0.70 -0.1 585,679 - Echvi_0520 0.70 +0.6 585,679 - Echvi_0520 0.70 -0.1 585,679 - Echvi_0520 0.70 +0.6 585,687 + Echvi_0520 0.71 +0.4 585,691 - Echvi_0520 0.72 +0.7 585,858 + Echvi_0520 0.89 -0.4 585,858 + Echvi_0520 0.89 +0.3 585,861 + Echvi_0520 0.89 -0.1 585,861 + Echvi_0520 0.89 +0.2 585,861 + Echvi_0520 0.89 +0.0 585,862 - Echvi_0520 0.89 +3.0 585,862 - Echvi_0520 0.89 -0.7 585,952 + +1.3 586,024 + +0.9 586,024 + +1.9 586,025 - -2.0 586,045 - +0.6 586,055 + +0.1 586,086 - +1.0 586,120 + +0.2 586,120 + -0.6 586,132 + Echvi_0521 0.11 +0.5 586,133 - Echvi_0521 0.12 +0.1 586,150 + Echvi_0521 0.14 -0.0 586,150 + Echvi_0521 0.14 -0.3 586,150 + Echvi_0521 0.14 +0.5 586,268 + Echvi_0521 0.31 -1.5 586,268 + Echvi_0521 0.31 +0.4 586,269 - Echvi_0521 0.31 +0.6 586,335 + Echvi_0521 0.41 +0.3 586,336 - Echvi_0521 0.41 +1.7 586,336 - Echvi_0521 0.41 +0.8 586,338 + Echvi_0521 0.42 +0.7 586,338 + Echvi_0521 0.42 +0.9 586,338 + Echvi_0521 0.42 +1.1 586,338 + Echvi_0521 0.42 +1.0 586,339 - Echvi_0521 0.42 +1.8 586,339 - Echvi_0521 0.42 +1.3 586,355 + Echvi_0521 0.44 +0.4 586,360 - Echvi_0521 0.45 -1.1 586,379 + Echvi_0521 0.48 +0.2 586,484 + Echvi_0521 0.63 -0.4 586,623 - Echvi_0521 0.83 +0.7 586,665 + Echvi_0521 0.89 +0.3 586,670 + +0.3 586,690 - -0.4 586,725 + +1.2 586,730 - +1.5 586,730 - +1.0 586,737 + -0.1 586,795 - +0.1 586,814 + +0.8 586,814 + +0.2 586,817 + +0.4 586,817 + +2.6 586,818 - +0.5 586,818 - +0.8 586,818 - +0.4 586,818 - +0.6 586,880 + +0.6 586,881 - +1.4 586,881 - +2.9 586,881 - +1.9 586,884 + +0.3 586,884 + +0.7 586,884 + +1.4 586,884 + +0.3 586,885 - +0.2 586,885 - +1.9 586,919 + -0.3 586,920 - -0.3 586,933 - -0.7 586,934 + +0.3 586,941 + Echvi_0522 0.10 -0.4 586,941 + Echvi_0522 0.10 +0.5 586,962 + Echvi_0522 0.11 -0.9 586,962 + Echvi_0522 0.11 -0.8 586,962 + Echvi_0522 0.11 +1.1 586,963 - Echvi_0522 0.11 +0.4
Or see this region's nucleotide sequence