Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0486

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0485 and Echvi_0486 are separated by 92 nucleotidesEchvi_0486 and Echvi_0487 are separated by 200 nucleotides Echvi_0485: Echvi_0485 - Beta-galactosidase/beta-glucuronidase, at 533,270 to 536,386 _0485 Echvi_0486: Echvi_0486 - Beta-xylosidase, at 536,479 to 538,623 _0486 Echvi_0487: Echvi_0487 - Highly conserved protein containing a thioredoxin domain, at 538,824 to 540,038 _0487 Position (kb) 536 537 538 539Strain fitness (log2 ratio) -2 -1 0 1 2at 535.517 kb on - strand, within Echvi_0485at 535.524 kb on + strand, within Echvi_0485at 535.524 kb on + strand, within Echvi_0485at 535.550 kb on + strand, within Echvi_0485at 535.633 kb on + strand, within Echvi_0485at 535.634 kb on - strand, within Echvi_0485at 535.636 kb on - strand, within Echvi_0485at 535.752 kb on + strand, within Echvi_0485at 535.793 kb on - strand, within Echvi_0485at 535.809 kb on - strand, within Echvi_0485at 535.968 kb on + strand, within Echvi_0485at 536.001 kb on - strand, within Echvi_0485at 536.051 kb on - strand, within Echvi_0485at 536.055 kb on + strand, within Echvi_0485at 536.056 kb on - strand, within Echvi_0485at 536.056 kb on - strand, within Echvi_0485at 536.256 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.275 kb on + strandat 536.387 kb on - strandat 536.389 kb on - strandat 536.403 kb on + strandat 536.403 kb on + strandat 536.425 kb on + strandat 536.440 kb on - strandat 536.440 kb on - strandat 536.508 kb on + strandat 536.526 kb on + strandat 536.526 kb on + strandat 536.559 kb on + strandat 536.628 kb on - strandat 536.636 kb on + strandat 536.636 kb on + strandat 536.688 kb on - strandat 536.771 kb on + strand, within Echvi_0486at 536.816 kb on - strand, within Echvi_0486at 536.826 kb on - strand, within Echvi_0486at 536.829 kb on + strand, within Echvi_0486at 536.948 kb on + strand, within Echvi_0486at 536.949 kb on - strand, within Echvi_0486at 537.024 kb on + strand, within Echvi_0486at 537.073 kb on - strand, within Echvi_0486at 537.073 kb on - strand, within Echvi_0486at 537.131 kb on + strand, within Echvi_0486at 537.135 kb on - strand, within Echvi_0486at 537.357 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.374 kb on + strand, within Echvi_0486at 537.375 kb on - strand, within Echvi_0486at 537.375 kb on - strand, within Echvi_0486at 537.396 kb on + strand, within Echvi_0486at 537.397 kb on - strand, within Echvi_0486at 537.397 kb on - strand, within Echvi_0486at 537.459 kb on - strand, within Echvi_0486at 537.575 kb on + strand, within Echvi_0486at 537.576 kb on - strand, within Echvi_0486at 537.814 kb on - strand, within Echvi_0486at 537.814 kb on - strand, within Echvi_0486at 537.815 kb on + strand, within Echvi_0486at 537.816 kb on - strand, within Echvi_0486at 537.825 kb on - strand, within Echvi_0486at 537.825 kb on - strand, within Echvi_0486at 537.825 kb on - strand, within Echvi_0486at 537.837 kb on - strand, within Echvi_0486at 537.837 kb on - strand, within Echvi_0486at 537.877 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.920 kb on + strand, within Echvi_0486at 537.996 kb on - strand, within Echvi_0486at 538.030 kb on - strand, within Echvi_0486at 538.103 kb on + strand, within Echvi_0486at 538.103 kb on + strand, within Echvi_0486at 538.109 kb on + strand, within Echvi_0486at 538.110 kb on - strand, within Echvi_0486at 538.113 kb on - strand, within Echvi_0486at 538.116 kb on + strand, within Echvi_0486at 538.151 kb on + strand, within Echvi_0486at 538.151 kb on + strand, within Echvi_0486at 538.161 kb on - strand, within Echvi_0486at 538.181 kb on + strand, within Echvi_0486at 538.181 kb on + strand, within Echvi_0486at 538.182 kb on - strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.185 kb on + strand, within Echvi_0486at 538.186 kb on - strand, within Echvi_0486at 538.249 kb on + strand, within Echvi_0486at 538.250 kb on - strand, within Echvi_0486at 538.346 kb on - strand, within Echvi_0486at 538.353 kb on - strand, within Echvi_0486at 538.393 kb on + strand, within Echvi_0486at 538.588 kb on - strandat 538.643 kb on - strandat 538.694 kb on + strandat 538.712 kb on + strandat 538.813 kb on + strandat 538.814 kb on - strandat 538.858 kb on + strandat 538.861 kb on + strandat 538.861 kb on + strandat 538.862 kb on - strandat 538.870 kb on + strandat 538.870 kb on + strandat 538.871 kb on - strandat 538.887 kb on + strandat 538.907 kb on + strandat 538.963 kb on + strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 538.964 kb on - strand, within Echvi_0487at 539.009 kb on - strand, within Echvi_0487at 539.012 kb on - strand, within Echvi_0487at 539.038 kb on + strand, within Echvi_0487at 539.141 kb on + strand, within Echvi_0487at 539.227 kb on + strand, within Echvi_0487at 539.237 kb on + strand, within Echvi_0487at 539.239 kb on + strand, within Echvi_0487at 539.245 kb on + strandat 539.245 kb on + strand, within Echvi_0487at 539.338 kb on + strand, within Echvi_0487at 539.353 kb on + strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.354 kb on - strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.419 kb on + strand, within Echvi_0487at 539.420 kb on - strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.477 kb on + strand, within Echvi_0487at 539.593 kb on + strand, within Echvi_0487

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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535,517 - Echvi_0485 0.72 -1.8
535,524 + Echvi_0485 0.72 -0.6
535,524 + Echvi_0485 0.72 -0.2
535,550 + Echvi_0485 0.73 +0.5
535,633 + Echvi_0485 0.76 +1.7
535,634 - Echvi_0485 0.76 -0.4
535,636 - Echvi_0485 0.76 +2.3
535,752 + Echvi_0485 0.80 +1.5
535,793 - Echvi_0485 0.81 -1.1
535,809 - Echvi_0485 0.81 +0.6
535,968 + Echvi_0485 0.87 +1.9
536,001 - Echvi_0485 0.88 -0.1
536,051 - Echvi_0485 0.89 -0.2
536,055 + Echvi_0485 0.89 -0.2
536,056 - Echvi_0485 0.89 +0.1
536,056 - Echvi_0485 0.89 +0.7
536,256 + +0.7
536,275 + +0.9
536,275 + -2.1
536,275 + +0.1
536,387 - -0.7
536,389 - +1.0
536,403 + +1.7
536,403 + -1.0
536,425 + +0.3
536,440 - -0.3
536,440 - +0.3
536,508 + +1.6
536,526 + +0.7
536,526 + -1.9
536,559 + -0.1
536,628 - -0.1
536,636 + -0.7
536,636 + -0.1
536,688 - -0.7
536,771 + Echvi_0486 0.14 -0.0
536,816 - Echvi_0486 0.16 +0.2
536,826 - Echvi_0486 0.16 -0.5
536,829 + Echvi_0486 0.16 -0.4
536,948 + Echvi_0486 0.22 -2.5
536,949 - Echvi_0486 0.22 -1.1
537,024 + Echvi_0486 0.25 -1.1
537,073 - Echvi_0486 0.28 -1.0
537,073 - Echvi_0486 0.28 +0.1
537,131 + Echvi_0486 0.30 -1.3
537,135 - Echvi_0486 0.31 +0.7
537,357 + Echvi_0486 0.41 +0.3
537,374 + Echvi_0486 0.42 +0.1
537,374 + Echvi_0486 0.42 +0.7
537,374 + Echvi_0486 0.42 -1.7
537,374 + Echvi_0486 0.42 +1.3
537,374 + Echvi_0486 0.42 +0.2
537,375 - Echvi_0486 0.42 -0.6
537,375 - Echvi_0486 0.42 +0.9
537,396 + Echvi_0486 0.43 -0.7
537,397 - Echvi_0486 0.43 -1.4
537,397 - Echvi_0486 0.43 +0.9
537,459 - Echvi_0486 0.46 +1.4
537,575 + Echvi_0486 0.51 -0.7
537,576 - Echvi_0486 0.51 +0.7
537,814 - Echvi_0486 0.62 +1.6
537,814 - Echvi_0486 0.62 +2.6
537,815 + Echvi_0486 0.62 +0.3
537,816 - Echvi_0486 0.62 +1.0
537,825 - Echvi_0486 0.63 -0.4
537,825 - Echvi_0486 0.63 -0.1
537,825 - Echvi_0486 0.63 +0.5
537,837 - Echvi_0486 0.63 -0.9
537,837 - Echvi_0486 0.63 +1.1
537,877 + Echvi_0486 0.65 +0.5
537,920 + Echvi_0486 0.67 -0.9
537,920 + Echvi_0486 0.67 +0.0
537,920 + Echvi_0486 0.67 -0.1
537,920 + Echvi_0486 0.67 -0.5
537,996 - Echvi_0486 0.71 -0.4
538,030 - Echvi_0486 0.72 -0.9
538,103 + Echvi_0486 0.76 -1.8
538,103 + Echvi_0486 0.76 -1.6
538,109 + Echvi_0486 0.76 +2.3
538,110 - Echvi_0486 0.76 -1.8
538,113 - Echvi_0486 0.76 +0.1
538,116 + Echvi_0486 0.76 -0.0
538,151 + Echvi_0486 0.78 +1.4
538,151 + Echvi_0486 0.78 -0.6
538,161 - Echvi_0486 0.78 +2.4
538,181 + Echvi_0486 0.79 +0.1
538,181 + Echvi_0486 0.79 -0.2
538,182 - Echvi_0486 0.79 +0.7
538,185 + Echvi_0486 0.80 +0.6
538,185 + Echvi_0486 0.80 +0.2
538,185 + Echvi_0486 0.80 -1.1
538,186 - Echvi_0486 0.80 +0.5
538,249 + Echvi_0486 0.83 -0.5
538,250 - Echvi_0486 0.83 +0.3
538,346 - Echvi_0486 0.87 +0.8
538,353 - Echvi_0486 0.87 +0.1
538,393 + Echvi_0486 0.89 -0.3
538,588 - +0.1
538,643 - +0.3
538,694 + +0.4
538,712 + +1.0
538,813 + -0.8
538,814 - -0.1
538,858 + -0.2
538,861 + +0.9
538,861 + +0.5
538,862 - -1.1
538,870 + -2.3
538,870 + -0.6
538,871 - -1.1
538,887 + -0.9
538,907 + -0.0
538,963 + Echvi_0487 0.11 -0.4
538,964 - Echvi_0487 0.12 -0.1
538,964 - Echvi_0487 0.12 +0.6
538,964 - Echvi_0487 0.12 -1.6
538,964 - Echvi_0487 0.12 +0.1
538,964 - Echvi_0487 0.12 +0.9
539,009 - Echvi_0487 0.15 +1.3
539,012 - Echvi_0487 0.15 -0.4
539,038 + Echvi_0487 0.18 -0.1
539,141 + Echvi_0487 0.26 +0.9
539,227 + Echvi_0487 0.33 -1.0
539,237 + Echvi_0487 0.34 -0.3
539,239 + Echvi_0487 0.34 -0.9
539,245 + +0.9
539,245 + Echvi_0487 0.35 -1.9
539,338 + Echvi_0487 0.42 -0.3
539,353 + Echvi_0487 0.44 -0.2
539,354 - Echvi_0487 0.44 +1.4
539,354 - Echvi_0487 0.44 -1.5
539,419 + Echvi_0487 0.49 -1.5
539,419 + Echvi_0487 0.49 -1.5
539,419 + Echvi_0487 0.49 -0.9
539,420 - Echvi_0487 0.49 -0.4
539,477 + Echvi_0487 0.54 +0.4
539,477 + Echvi_0487 0.54 +0.3
539,477 + Echvi_0487 0.54 +0.6
539,593 + Echvi_0487 0.63 -0.6

Or see this region's nucleotide sequence