Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21580 and CA264_21585 are separated by 41 nucleotides CA264_21585 and CA264_21590 are separated by 48 nucleotides CA264_21590 and CA264_21595 are separated by 75 nucleotides CA264_21595 and CA264_21600 are separated by 379 nucleotides CA264_21600 and CA264_21605 are separated by 254 nucleotides
CA264_21580: CA264_21580 - hypothetical protein, at 183,836 to 184,834
_21580
CA264_21585: CA264_21585 - hypothetical protein, at 184,876 to 185,205
_21585
CA264_21590: CA264_21590 - SnoaL-like polyketide cyclase, at 185,254 to 185,643
_21590
CA264_21595: CA264_21595 - copper oxidase, at 185,719 to 188,283
_21595
CA264_21600: CA264_21600 - four-helix bundle copper-binding protein, at 188,663 to 188,986
_21600
CA264_21605: CA264_21605 - hypothetical protein, at 189,241 to 190,242
_21605
Position (kb) 185
186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 184.747 kb on + strand at 184.748 kb on - strand at 184.765 kb on + strand at 184.766 kb on - strand at 184.821 kb on + strand at 184.822 kb on - strand at 184.847 kb on - strand at 184.851 kb on - strand at 184.939 kb on + strand, within CA264_21585 at 184.940 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.035 kb on - strand, within CA264_21585 at 185.037 kb on + strand, within CA264_21585 at 185.038 kb on - strand, within CA264_21585 at 185.041 kb on + strand, within CA264_21585 at 185.042 kb on - strand, within CA264_21585 at 185.042 kb on - strand, within CA264_21585 at 185.065 kb on - strand, within CA264_21585 at 185.092 kb on - strand, within CA264_21585 at 185.158 kb on + strand, within CA264_21585 at 185.159 kb on - strand, within CA264_21585 at 185.162 kb on + strand, within CA264_21585 at 185.162 kb on + strand, within CA264_21585 at 185.163 kb on - strand, within CA264_21585 at 185.183 kb on - strand at 185.206 kb on - strand at 185.216 kb on - strand at 185.235 kb on + strand at 185.260 kb on - strand at 185.316 kb on + strand, within CA264_21590 at 185.316 kb on + strand, within CA264_21590 at 185.317 kb on - strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.318 kb on + strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.319 kb on - strand, within CA264_21590 at 185.360 kb on + strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.361 kb on - strand, within CA264_21590 at 185.381 kb on - strand, within CA264_21590 at 185.451 kb on - strand, within CA264_21590 at 185.454 kb on + strand, within CA264_21590 at 185.505 kb on + strand, within CA264_21590 at 185.505 kb on + strand, within CA264_21590 at 185.506 kb on - strand, within CA264_21590 at 185.584 kb on + strand, within CA264_21590 at 185.585 kb on - strand, within CA264_21590 at 185.623 kb on + strand at 185.624 kb on - strand at 185.624 kb on - strand at 185.649 kb on - strand at 185.649 kb on - strand at 185.649 kb on - strand at 185.765 kb on + strand at 185.837 kb on + strand at 185.838 kb on - strand at 185.838 kb on - strand at 185.838 kb on - strand at 185.851 kb on - strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.928 kb on + strand at 185.983 kb on - strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.009 kb on + strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.010 kb on - strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.011 kb on + strand, within CA264_21595 at 186.027 kb on + strand, within CA264_21595 at 186.067 kb on - strand, within CA264_21595 at 186.114 kb on - strand, within CA264_21595 at 186.129 kb on + strand, within CA264_21595 at 186.129 kb on + strand, within CA264_21595 at 186.134 kb on + strand, within CA264_21595 at 186.138 kb on + strand, within CA264_21595 at 186.170 kb on + strand, within CA264_21595 at 186.170 kb on + strand, within CA264_21595 at 186.171 kb on - strand, within CA264_21595 at 186.181 kb on + strand, within CA264_21595 at 186.186 kb on + strand, within CA264_21595 at 186.231 kb on + strand, within CA264_21595 at 186.302 kb on + strand, within CA264_21595 at 186.330 kb on + strand, within CA264_21595 at 186.355 kb on - strand, within CA264_21595 at 186.404 kb on + strand, within CA264_21595 at 186.454 kb on + strand, within CA264_21595 at 186.455 kb on - strand, within CA264_21595 at 186.477 kb on - strand, within CA264_21595 at 186.729 kb on - strand, within CA264_21595 at 186.732 kb on + strand, within CA264_21595 at 186.733 kb on - strand, within CA264_21595 at 186.841 kb on - strand, within CA264_21595 at 186.841 kb on - strand, within CA264_21595 at 186.925 kb on - strand, within CA264_21595 at 187.221 kb on + strand, within CA264_21595 at 187.222 kb on - strand, within CA264_21595 at 187.258 kb on - strand, within CA264_21595 at 187.286 kb on - strand, within CA264_21595 at 187.373 kb on - strand, within CA264_21595 at 187.382 kb on - strand, within CA264_21595 at 187.462 kb on - strand, within CA264_21595 at 187.535 kb on - strand, within CA264_21595 at 187.535 kb on - strand, within CA264_21595 at 187.551 kb on + strand, within CA264_21595 at 187.551 kb on + strand, within CA264_21595 at 187.552 kb on - strand, within CA264_21595 at 187.553 kb on + strand, within CA264_21595 at 187.562 kb on + strand, within CA264_21595 at 187.601 kb on + strand, within CA264_21595 at 187.604 kb on + strand, within CA264_21595 at 187.604 kb on + strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.605 kb on - strand, within CA264_21595 at 187.606 kb on + strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.607 kb on - strand, within CA264_21595 at 187.617 kb on + strand, within CA264_21595 at 187.678 kb on + strand, within CA264_21595 at 187.679 kb on - strand, within CA264_21595 at 187.682 kb on - strand, within CA264_21595 at 187.686 kb on + strand, within CA264_21595 at 187.721 kb on + strand, within CA264_21595 at 187.722 kb on - strand, within CA264_21595 at 187.761 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.772 kb on + strand, within CA264_21595 at 187.773 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.812 kb on - strand, within CA264_21595 at 187.853 kb on + strand, within CA264_21595 at 187.893 kb on - strand, within CA264_21595 at 187.898 kb on + strand, within CA264_21595 at 187.928 kb on + strand, within CA264_21595 at 187.933 kb on - strand, within CA264_21595 at 187.963 kb on - strand, within CA264_21595 at 187.970 kb on + strand, within CA264_21595 at 187.985 kb on + strand, within CA264_21595 at 187.986 kb on - strand, within CA264_21595 at 188.164 kb on - strand at 188.164 kb on - strand at 188.167 kb on - strand at 188.167 kb on - strand at 188.172 kb on + strand at 188.175 kb on - strand at 188.185 kb on - strand at 188.227 kb on + strand at 188.228 kb on - strand at 188.228 kb on - strand at 188.265 kb on + strand at 188.266 kb on - strand at 188.275 kb on - strand at 188.284 kb on - strand at 188.300 kb on - strand at 188.304 kb on + strand at 188.360 kb on - strand at 188.435 kb on + strand at 188.492 kb on - strand at 188.492 kb on - strand at 188.492 kb on - strand at 188.494 kb on - strand at 188.517 kb on + strand at 188.522 kb on - strand at 188.522 kb on - strand at 188.523 kb on + strand at 188.523 kb on + strand at 188.523 kb on + strand at 188.524 kb on - strand at 188.524 kb on - strand at 188.524 kb on - strand at 188.533 kb on + strand at 188.540 kb on - strand at 188.544 kb on + strand at 188.544 kb on + strand at 188.544 kb on + strand at 188.547 kb on + strand at 188.559 kb on + strand at 188.560 kb on - strand at 188.571 kb on - strand at 188.571 kb on - strand at 188.573 kb on + strand at 188.603 kb on + strand at 188.603 kb on + strand at 188.608 kb on + strand at 188.630 kb on + strand at 188.630 kb on + strand at 188.635 kb on + strand at 188.635 kb on + strand at 188.645 kb on - strand at 188.645 kb on - strand at 188.649 kb on + strand at 188.649 kb on + strand at 188.650 kb on - strand at 188.653 kb on + strand at 188.654 kb on - strand at 188.654 kb on - strand at 188.654 kb on - strand at 188.679 kb on + strand at 188.741 kb on - strand, within CA264_21600 at 188.796 kb on - strand, within CA264_21600 at 188.832 kb on + strand, within CA264_21600 at 188.833 kb on - strand, within CA264_21600 at 188.838 kb on - strand, within CA264_21600 at 188.842 kb on + strand, within CA264_21600 at 188.843 kb on - strand, within CA264_21600 at 188.902 kb on + strand, within CA264_21600 at 188.902 kb on + strand, within CA264_21600 at 188.927 kb on - strand, within CA264_21600 at 188.986 kb on + strand at 188.986 kb on + strand at 188.987 kb on + strand at 188.992 kb on + strand at 188.993 kb on - strand at 189.003 kb on + strand at 189.019 kb on - strand at 189.020 kb on + strand at 189.031 kb on + strand at 189.068 kb on + strand at 189.071 kb on - strand at 189.072 kb on + strand at 189.196 kb on + strand at 189.198 kb on + strand at 189.198 kb on + strand at 189.199 kb on - strand at 189.199 kb on - strand at 189.217 kb on - strand at 189.235 kb on + strand at 189.236 kb on - strand at 189.240 kb on + strand at 189.251 kb on + strand at 189.251 kb on + strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.252 kb on - strand at 189.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 184,747 + +0.9 184,748 - +0.4 184,765 + +1.3 184,766 - -0.4 184,821 + +1.1 184,822 - +0.4 184,847 - -0.3 184,851 - -2.1 184,939 + CA264_21585 0.19 +0.0 184,940 - CA264_21585 0.19 +1.7 185,035 - CA264_21585 0.48 -0.0 185,035 - CA264_21585 0.48 +1.5 185,035 - CA264_21585 0.48 +0.1 185,037 + CA264_21585 0.49 -0.6 185,038 - CA264_21585 0.49 +1.3 185,041 + CA264_21585 0.50 +0.8 185,042 - CA264_21585 0.50 -0.7 185,042 - CA264_21585 0.50 -0.9 185,065 - CA264_21585 0.57 +1.0 185,092 - CA264_21585 0.65 -0.0 185,158 + CA264_21585 0.85 +1.1 185,159 - CA264_21585 0.86 -0.1 185,162 + CA264_21585 0.87 -0.9 185,162 + CA264_21585 0.87 +1.0 185,163 - CA264_21585 0.87 -1.3 185,183 - +1.7 185,206 - +0.7 185,216 - -0.0 185,235 + +1.0 185,260 - -0.6 185,316 + CA264_21590 0.16 +0.5 185,316 + CA264_21590 0.16 -1.5 185,317 - CA264_21590 0.16 -2.1 185,318 + CA264_21590 0.16 +1.0 185,318 + CA264_21590 0.16 +0.3 185,318 + CA264_21590 0.16 +0.6 185,319 - CA264_21590 0.17 -0.3 185,319 - CA264_21590 0.17 -0.6 185,319 - CA264_21590 0.17 +1.4 185,360 + CA264_21590 0.27 +0.7 185,361 - CA264_21590 0.27 -1.4 185,361 - CA264_21590 0.27 -0.1 185,361 - CA264_21590 0.27 -0.1 185,381 - CA264_21590 0.33 -0.3 185,451 - CA264_21590 0.51 -0.3 185,454 + CA264_21590 0.51 +0.4 185,505 + CA264_21590 0.64 +0.6 185,505 + CA264_21590 0.64 -0.3 185,506 - CA264_21590 0.65 -1.3 185,584 + CA264_21590 0.85 +1.0 185,585 - CA264_21590 0.85 -0.6 185,623 + +0.7 185,624 - -0.3 185,624 - -1.0 185,649 - -0.3 185,649 - +0.3 185,649 - -0.2 185,765 + +1.7 185,837 + +3.3 185,838 - -0.4 185,838 - -0.2 185,838 - +0.1 185,851 - -0.3 185,928 + -0.7 185,928 + +0.5 185,928 + -0.3 185,928 + -1.1 185,983 - CA264_21595 0.10 -0.7 186,009 + CA264_21595 0.11 +1.0 186,009 + CA264_21595 0.11 +0.2 186,009 + CA264_21595 0.11 -0.1 186,009 + CA264_21595 0.11 +0.4 186,010 - CA264_21595 0.11 -0.2 186,010 - CA264_21595 0.11 +0.2 186,010 - CA264_21595 0.11 +2.1 186,011 + CA264_21595 0.11 -2.1 186,011 + CA264_21595 0.11 +0.1 186,011 + CA264_21595 0.11 -0.1 186,011 + CA264_21595 0.11 +0.2 186,027 + CA264_21595 0.12 -0.9 186,067 - CA264_21595 0.14 +0.2 186,114 - CA264_21595 0.15 +0.0 186,129 + CA264_21595 0.16 -0.4 186,129 + CA264_21595 0.16 -0.5 186,134 + CA264_21595 0.16 +1.0 186,138 + CA264_21595 0.16 -0.9 186,170 + CA264_21595 0.18 -1.9 186,170 + CA264_21595 0.18 +0.5 186,171 - CA264_21595 0.18 -1.0 186,181 + CA264_21595 0.18 -0.3 186,186 + CA264_21595 0.18 +1.0 186,231 + CA264_21595 0.20 -0.0 186,302 + CA264_21595 0.23 +0.5 186,330 + CA264_21595 0.24 -0.1 186,355 - CA264_21595 0.25 +0.0 186,404 + CA264_21595 0.27 +0.1 186,454 + CA264_21595 0.29 -0.0 186,455 - CA264_21595 0.29 +0.1 186,477 - CA264_21595 0.30 +0.2 186,729 - CA264_21595 0.39 -0.9 186,732 + CA264_21595 0.39 +0.2 186,733 - CA264_21595 0.40 -0.1 186,841 - CA264_21595 0.44 -0.2 186,841 - CA264_21595 0.44 -0.5 186,925 - CA264_21595 0.47 +0.2 187,221 + CA264_21595 0.59 +0.5 187,222 - CA264_21595 0.59 -0.5 187,258 - CA264_21595 0.60 -0.7 187,286 - CA264_21595 0.61 -0.5 187,373 - CA264_21595 0.64 -1.2 187,382 - CA264_21595 0.65 -0.2 187,462 - CA264_21595 0.68 -0.8 187,535 - CA264_21595 0.71 +1.7 187,535 - CA264_21595 0.71 -0.3 187,551 + CA264_21595 0.71 +0.4 187,551 + CA264_21595 0.71 +0.2 187,552 - CA264_21595 0.71 -0.8 187,553 + CA264_21595 0.72 +0.4 187,562 + CA264_21595 0.72 -0.7 187,601 + CA264_21595 0.73 +0.1 187,604 + CA264_21595 0.73 -0.7 187,604 + CA264_21595 0.73 +0.2 187,605 - CA264_21595 0.74 -2.2 187,605 - CA264_21595 0.74 -1.9 187,605 - CA264_21595 0.74 -0.2 187,606 + CA264_21595 0.74 -1.0 187,607 - CA264_21595 0.74 -0.5 187,607 - CA264_21595 0.74 -0.3 187,607 - CA264_21595 0.74 +0.7 187,617 + CA264_21595 0.74 -1.3 187,678 + CA264_21595 0.76 -0.1 187,679 - CA264_21595 0.76 -1.1 187,682 - CA264_21595 0.77 -0.9 187,686 + CA264_21595 0.77 +0.8 187,721 + CA264_21595 0.78 +0.3 187,722 - CA264_21595 0.78 +0.7 187,761 + CA264_21595 0.80 -0.8 187,772 + CA264_21595 0.80 -0.3 187,772 + CA264_21595 0.80 +0.3 187,772 + CA264_21595 0.80 -1.0 187,773 - CA264_21595 0.80 -0.6 187,812 - CA264_21595 0.82 -1.1 187,812 - CA264_21595 0.82 -0.2 187,812 - CA264_21595 0.82 +0.1 187,853 + CA264_21595 0.83 +0.2 187,893 - CA264_21595 0.85 -1.1 187,898 + CA264_21595 0.85 +0.1 187,928 + CA264_21595 0.86 -0.7 187,933 - CA264_21595 0.86 -0.3 187,963 - CA264_21595 0.87 -0.7 187,970 + CA264_21595 0.88 +0.4 187,985 + CA264_21595 0.88 +1.9 187,986 - CA264_21595 0.88 -0.8 188,164 - -1.6 188,164 - +0.2 188,167 - +0.0 188,167 - -0.4 188,172 + +0.0 188,175 - -0.0 188,185 - -0.8 188,227 + +0.2 188,228 - -0.6 188,228 - -0.8 188,265 + -0.7 188,266 - -0.6 188,275 - -1.3 188,284 - +0.1 188,300 - -0.9 188,304 + -0.2 188,360 - -0.3 188,435 + +0.7 188,492 - +1.7 188,492 - -0.3 188,492 - -0.4 188,494 - -0.8 188,517 + +1.2 188,522 - -0.0 188,522 - -0.8 188,523 + +0.4 188,523 + +0.6 188,523 + +0.5 188,524 - +0.4 188,524 - +0.3 188,524 - -0.5 188,533 + +0.8 188,540 - -1.3 188,544 + +1.0 188,544 + -0.3 188,544 + -0.0 188,547 + -0.3 188,559 + -1.0 188,560 - -0.9 188,571 - +1.2 188,571 - +0.2 188,573 + -0.5 188,603 + -0.5 188,603 + +0.3 188,608 + +1.4 188,630 + -1.5 188,630 + +0.6 188,635 + -0.7 188,635 + +1.0 188,645 - +0.8 188,645 - -1.3 188,649 + +0.1 188,649 + -0.5 188,650 - -0.3 188,653 + -0.9 188,654 - -0.9 188,654 - +0.3 188,654 - +0.6 188,679 + -0.4 188,741 - CA264_21600 0.24 +0.1 188,796 - CA264_21600 0.41 -0.7 188,832 + CA264_21600 0.52 -0.6 188,833 - CA264_21600 0.52 -0.0 188,838 - CA264_21600 0.54 -0.2 188,842 + CA264_21600 0.55 -0.2 188,843 - CA264_21600 0.56 +0.5 188,902 + CA264_21600 0.74 +0.4 188,902 + CA264_21600 0.74 +1.3 188,927 - CA264_21600 0.81 -1.2 188,986 + +1.7 188,986 + +0.1 188,987 + -1.2 188,992 + -0.5 188,993 - -0.7 189,003 + +0.7 189,019 - +0.2 189,020 + -0.0 189,031 + -0.3 189,068 + +0.4 189,071 - -0.2 189,072 + -1.3 189,196 + +0.5 189,198 + +0.7 189,198 + +0.1 189,199 - -1.2 189,199 - +0.9 189,217 - +1.0 189,235 + +1.2 189,236 - -0.5 189,240 + +0.2 189,251 + +0.4 189,251 + +0.4 189,252 - +0.5 189,252 - +0.1 189,252 - +0.4 189,252 - -2.2 189,253 + +0.3
Or see this region's nucleotide sequence