Experiment: m.b. Spectinomycin 0.08 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21180 and CA264_21185 are separated by 413 nucleotides CA264_21185 and CA264_21190 are separated by 7 nucleotides
CA264_21180: CA264_21180 - ribulose-phosphate 3-epimerase, at 102,297 to 102,953
_21180
CA264_21185: CA264_21185 - hypothetical protein, at 103,367 to 103,999
_21185
CA264_21190: CA264_21190 - hypothetical protein, at 104,007 to 105,101
_21190
Position (kb) 103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.408 kb on + strand, within CA264_21180 at 102.409 kb on - strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.467 kb on + strand, within CA264_21180 at 102.541 kb on - strand, within CA264_21180 at 102.541 kb on - strand, within CA264_21180 at 102.580 kb on + strand, within CA264_21180 at 102.636 kb on + strand, within CA264_21180 at 102.646 kb on - strand, within CA264_21180 at 102.654 kb on + strand, within CA264_21180 at 102.705 kb on + strand, within CA264_21180 at 102.706 kb on - strand, within CA264_21180 at 102.706 kb on - strand, within CA264_21180 at 102.780 kb on - strand, within CA264_21180 at 102.838 kb on - strand, within CA264_21180 at 102.855 kb on + strand, within CA264_21180 at 102.856 kb on - strand, within CA264_21180 at 102.856 kb on - strand, within CA264_21180 at 102.875 kb on + strand, within CA264_21180 at 102.876 kb on - strand, within CA264_21180 at 102.876 kb on - strand, within CA264_21180 at 102.931 kb on - strand at 102.931 kb on - strand at 102.956 kb on + strand at 103.061 kb on + strand at 103.062 kb on - strand at 103.098 kb on + strand at 103.098 kb on + strand at 103.099 kb on - strand at 103.105 kb on + strand at 103.114 kb on - strand at 103.114 kb on - strand at 103.157 kb on - strand at 103.165 kb on + strand at 103.174 kb on + strand at 103.191 kb on - strand at 103.336 kb on + strand at 103.347 kb on - strand at 103.361 kb on + strand at 103.381 kb on - strand at 103.394 kb on + strand at 103.501 kb on + strand, within CA264_21185 at 103.502 kb on - strand, within CA264_21185 at 103.531 kb on + strand, within CA264_21185 at 103.579 kb on - strand, within CA264_21185 at 103.675 kb on - strand, within CA264_21185 at 103.713 kb on - strand, within CA264_21185 at 103.787 kb on - strand, within CA264_21185 at 103.998 kb on - strand at 104.006 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.08 mg/ml remove 102,408 + CA264_21180 0.17 -0.0 102,409 - CA264_21180 0.17 -0.2 102,467 + CA264_21180 0.26 -1.1 102,467 + CA264_21180 0.26 -2.1 102,467 + CA264_21180 0.26 +0.7 102,541 - CA264_21180 0.37 +1.2 102,541 - CA264_21180 0.37 -0.1 102,580 + CA264_21180 0.43 -0.4 102,636 + CA264_21180 0.52 -2.6 102,646 - CA264_21180 0.53 +1.4 102,654 + CA264_21180 0.54 +0.0 102,705 + CA264_21180 0.62 +1.1 102,706 - CA264_21180 0.62 +0.7 102,706 - CA264_21180 0.62 +0.1 102,780 - CA264_21180 0.74 -0.1 102,838 - CA264_21180 0.82 +0.5 102,855 + CA264_21180 0.85 -1.1 102,856 - CA264_21180 0.85 -0.3 102,856 - CA264_21180 0.85 +0.9 102,875 + CA264_21180 0.88 -0.8 102,876 - CA264_21180 0.88 +0.4 102,876 - CA264_21180 0.88 +3.0 102,931 - -0.4 102,931 - -0.3 102,956 + -0.6 103,061 + -1.4 103,062 - +0.8 103,098 + +0.4 103,098 + +0.4 103,099 - -2.1 103,105 + +0.4 103,114 - -0.3 103,114 - -0.1 103,157 - -1.8 103,165 + -0.8 103,174 + +0.1 103,191 - +0.4 103,336 + +0.1 103,347 - +0.0 103,361 + +1.4 103,381 - -0.1 103,394 + -1.6 103,501 + CA264_21185 0.21 -0.6 103,502 - CA264_21185 0.21 +0.4 103,531 + CA264_21185 0.26 -0.3 103,579 - CA264_21185 0.33 +0.6 103,675 - CA264_21185 0.49 +0.6 103,713 - CA264_21185 0.55 -0.3 103,787 - CA264_21185 0.66 +0.9 103,998 - +0.1 104,006 + -0.4
Or see this region's nucleotide sequence